Wall clock time and date at job start Tue Mar 31 2020 01:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47857 * 2 1 4 4 C 1.50702 * 109.47145 * 239.99617 * 2 1 3 5 5 H 1.08000 * 120.00133 * 240.00819 * 4 2 1 6 6 C 1.37877 * 119.99567 * 60.00130 * 4 2 1 7 7 N 1.31515 * 120.00078 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99828 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47193 * 90.00307 * 8 6 4 10 10 H 1.48500 * 109.47397 * 210.00137 * 8 6 4 11 11 H 1.48498 * 109.47567 * 330.00467 * 8 6 4 12 12 O 1.45206 * 109.46767 * 120.00229 * 2 1 3 13 13 C 1.34223 * 116.99765 * 269.99517 * 12 2 1 14 14 O 1.20827 * 120.00074 * 359.97438 * 13 12 2 15 15 C 1.50706 * 119.99971 * 180.02562 * 13 12 2 16 16 H 1.09002 * 112.50908 * 50.32001 * 15 13 12 17 17 C 1.52886 * 113.16504 * 180.22982 * 15 13 12 18 18 C 1.51432 * 84.73358 * 115.22259 * 17 15 13 19 19 C 1.38958 * 145.51005 * 179.97438 * 18 17 15 20 20 C 1.37953 * 120.34205 * 180.02562 * 19 18 17 21 21 C 1.38355 * 120.16242 * 359.97438 * 20 19 18 22 22 Cl 1.73604 * 120.14072 * 180.02562 * 21 20 19 23 23 C 1.38292 * 119.72029 * 359.97438 * 21 20 19 24 24 C 1.38215 * 120.11635 * 0.03039 * 23 21 20 25 25 H 1.09007 * 109.46853 * 59.99913 * 1 2 3 26 26 H 1.08996 * 109.47857 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47082 * 300.00059 * 1 2 3 28 28 H 0.97002 * 119.99513 * 179.97438 * 7 6 4 29 29 H 1.08995 * 113.98251 * 229.16467 * 17 15 13 30 30 H 1.08996 * 113.98855 * 1.27117 * 17 15 13 31 31 H 1.08005 * 119.83248 * 0.02562 * 19 18 17 32 32 H 1.08001 * 119.91875 * 180.02562 * 20 19 18 33 33 H 1.08005 * 119.93922 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6531 -1.5887 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6033 8 14 2.3224 -1.1196 -4.0079 9 1 1.3447 -2.1616 -4.4123 10 1 2.4873 -0.1404 -5.1120 11 1 3.6307 -1.7568 -3.7119 12 8 2.0139 -0.6846 1.1856 13 6 2.2171 0.0639 2.2811 14 8 1.9983 1.2518 2.2503 15 6 2.7192 -0.5772 3.5492 16 1 3.6001 -1.1972 3.3829 17 6 2.8896 0.4163 4.6987 18 6 1.7904 -0.3826 5.3672 19 6 0.9948 -0.5118 6.4991 20 6 0.0623 -1.5250 6.5835 21 6 -0.0875 -2.4206 5.5396 22 17 -1.2616 -3.6950 5.6461 23 6 0.7011 -2.2957 4.4105 24 6 1.6354 -1.2806 4.3260 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3635 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.7096 1.1617 -3.4844 29 1 3.8541 0.3503 5.2020 30 1 2.6048 1.4379 4.4474 31 1 1.1069 0.1845 7.3170 32 1 -0.5528 -1.6188 7.4662 33 1 0.5874 -2.9931 3.5937 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870205168.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:25:55 Heat of formation + Delta-G solvation = -36.371066 kcal Electronic energy + Delta-G solvation = -18979.463950 eV Core-core repulsion = 15804.281276 eV Total energy + Delta-G solvation = -3175.182674 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.065 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.08179 -39.12741 -36.99423 -35.90431 -34.84332 -33.27764 -30.99774 -29.68966 -27.74783 -25.64004 -25.27915 -22.79920 -21.59215 -20.61262 -19.29208 -17.46305 -17.01007 -16.64697 -15.87412 -15.60906 -15.05687 -14.67092 -14.53890 -13.78591 -13.63988 -13.24307 -13.09300 -12.48610 -12.37967 -12.11849 -11.78549 -11.39543 -11.35252 -11.22475 -11.17324 -11.08389 -10.84944 -10.64607 -10.40884 -10.29841 -9.84150 -9.58029 -9.00543 -8.93671 -8.59437 -8.50742 -6.20146 -4.27317 0.95200 1.12257 1.96138 2.81206 3.23886 3.28474 3.31631 3.39032 3.64474 4.00076 4.24586 4.32128 4.41679 4.82988 5.12729 5.14313 5.20997 5.32903 5.42548 5.61238 5.65795 5.80410 5.98991 6.00888 6.07097 6.49654 6.60065 6.62696 6.87289 6.88876 7.12532 7.57048 7.69846 7.89639 8.11136 8.57229 8.84532 9.38212 10.87290 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.021770 B = 0.004311 C = 0.003848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.884650 B = 6493.922557 C = 7274.591536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.215 3.785 3 H 0.047 0.953 4 C -0.521 4.521 5 H 0.069 0.931 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.912 3.088 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.271 1.271 12 O -0.351 6.351 13 C 0.467 3.533 14 O -0.514 6.514 15 C -0.040 4.040 16 H 0.129 0.871 17 C -0.060 4.060 18 C -0.112 4.112 19 C -0.090 4.090 20 C -0.105 4.105 21 C -0.035 4.035 22 Cl -0.067 7.067 23 C -0.068 4.068 24 C -0.105 4.105 25 H 0.100 0.900 26 H 0.037 0.963 27 H 0.015 0.985 28 H 0.266 0.734 29 H 0.106 0.894 30 H 0.117 0.883 31 H 0.129 0.871 32 H 0.136 0.864 33 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.607 -4.830 17.677 18.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.163 3.837 3 H 0.065 0.935 4 C -0.559 4.559 5 H 0.087 0.913 6 C -0.139 4.139 7 N -0.527 5.527 8 Si 0.739 3.261 9 H -0.203 1.203 10 H -0.209 1.209 11 H -0.196 1.196 12 O -0.266 6.266 13 C 0.309 3.691 14 O -0.404 6.404 15 C -0.059 4.059 16 H 0.147 0.853 17 C -0.097 4.097 18 C -0.112 4.112 19 C -0.108 4.108 20 C -0.123 4.123 21 C -0.062 4.062 22 Cl -0.038 7.038 23 C -0.087 4.087 24 C -0.105 4.105 25 H 0.118 0.882 26 H 0.056 0.944 27 H 0.034 0.966 28 H 0.076 0.924 29 H 0.124 0.876 30 H 0.135 0.865 31 H 0.147 0.853 32 H 0.154 0.846 33 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 0.318 -4.486 17.471 18.040 hybrid contribution -0.043 -0.525 -0.919 1.059 sum 0.274 -5.010 16.551 17.295 Atomic orbital electron populations 1.22157 0.97510 1.00153 1.01388 1.20683 0.91445 0.93918 0.77676 0.93495 1.21019 1.32585 1.13505 0.88839 0.91271 1.24887 0.94909 0.95071 0.99072 1.69901 1.36061 1.22495 1.24208 0.86266 0.79314 0.79137 0.81379 1.20338 1.20949 1.19600 1.86491 1.75413 1.43554 1.21182 1.22705 0.75037 0.85751 0.85628 1.90595 1.48574 1.16753 1.84463 1.21034 0.97488 0.96460 0.90953 0.85327 1.21839 0.96770 0.99595 0.91480 1.22491 0.97284 0.97184 0.94290 1.20427 0.95037 0.97918 0.97453 1.20853 0.99009 0.94291 0.98172 1.20572 0.95382 0.93653 0.96586 1.98369 1.57063 1.50187 1.98219 1.20089 0.93676 0.97924 0.96993 1.21081 0.97004 0.95523 0.96910 0.88195 0.94412 0.96591 0.92371 0.87570 0.86488 0.85260 0.84624 0.84526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.97 9.33 37.16 0.35 -3.62 16 2 C 0.21 5.79 2.56 -27.88 -0.07 5.72 16 3 H 0.05 1.39 7.16 -51.93 -0.37 1.01 16 4 C -0.52 -14.61 8.90 -34.44 -0.31 -14.92 16 5 H 0.07 1.90 7.81 -52.49 -0.41 1.49 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -25.23 11.32 55.43 0.63 -24.60 16 8 Si 0.91 21.01 29.54 -169.99 -5.02 15.98 16 9 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 12 O -0.35 -8.33 9.86 -39.24 -0.39 -8.72 16 13 C 0.47 9.61 7.43 36.01 0.27 9.88 16 14 O -0.51 -11.84 14.88 -18.75 -0.28 -12.12 16 15 C -0.04 -0.60 4.26 -96.57 -0.41 -1.01 16 16 H 0.13 1.58 8.14 -51.93 -0.42 1.16 16 17 C -0.06 -0.72 7.91 -27.58 -0.22 -0.94 16 18 C -0.11 -1.43 7.32 -107.57 -0.79 -2.21 16 19 C -0.09 -0.98 10.04 -39.42 -0.40 -1.38 16 20 C -0.10 -1.13 9.82 -39.64 -0.39 -1.52 16 21 C -0.04 -0.44 6.32 -39.52 -0.25 -0.69 16 22 Cl -0.07 -0.77 28.97 -51.86 -1.50 -2.28 16 23 C -0.07 -0.96 9.83 -39.57 -0.39 -1.35 16 24 C -0.10 -1.52 7.05 -104.55 -0.74 -2.26 16 25 H 0.10 2.73 6.07 -51.93 -0.32 2.42 16 26 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 29 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.12 1.55 7.02 -51.93 -0.36 1.19 16 31 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 32 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 33 H 0.14 1.89 8.06 -52.48 -0.42 1.46 16 LS Contribution 305.06 15.07 4.60 4.60 Total: -1.00 -30.75 305.06 -8.96 -39.71 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -3.56 Total: 0.11 kcal Atomic # 6 Polarization: -9.24 SS G_CDS: -3.44 Total: -12.68 kcal Atomic # 7 Polarization: -25.23 SS G_CDS: 0.63 Total: -24.60 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: -0.67 Total: -20.84 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -1.50 Total: -2.28 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.75 -8.96 -39.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870205168.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.337 kcal (2) G-P(sol) polarization free energy of solvation -30.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds