Wall clock time and date at job start Tue Mar 31 2020 01:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47857 * 2 1 4 4 C 1.50702 * 109.47145 * 239.99617 * 2 1 3 5 5 H 1.08000 * 120.00133 * 240.00819 * 4 2 1 6 6 C 1.37877 * 119.99567 * 60.00130 * 4 2 1 7 7 N 1.31515 * 120.00078 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99828 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47193 * 90.00307 * 8 6 4 10 10 H 1.48500 * 109.47397 * 210.00137 * 8 6 4 11 11 H 1.48498 * 109.47567 * 330.00467 * 8 6 4 12 12 O 1.45206 * 109.46767 * 120.00229 * 2 1 3 13 13 C 1.34223 * 116.99765 * 269.99517 * 12 2 1 14 14 O 1.20827 * 120.00074 * 359.97438 * 13 12 2 15 15 C 1.50706 * 119.99971 * 180.02562 * 13 12 2 16 16 H 1.09002 * 112.50908 * 50.32001 * 15 13 12 17 17 C 1.52886 * 113.16504 * 180.22982 * 15 13 12 18 18 C 1.51432 * 84.73358 * 115.22259 * 17 15 13 19 19 C 1.38958 * 145.51005 * 179.97438 * 18 17 15 20 20 C 1.37953 * 120.34205 * 180.02562 * 19 18 17 21 21 C 1.38355 * 120.16242 * 359.97438 * 20 19 18 22 22 Cl 1.73604 * 120.14072 * 180.02562 * 21 20 19 23 23 C 1.38292 * 119.72029 * 359.97438 * 21 20 19 24 24 C 1.38215 * 120.11635 * 0.03039 * 23 21 20 25 25 H 1.09007 * 109.46853 * 59.99913 * 1 2 3 26 26 H 1.08996 * 109.47857 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47082 * 300.00059 * 1 2 3 28 28 H 0.97002 * 119.99513 * 179.97438 * 7 6 4 29 29 H 1.08995 * 113.98251 * 229.16467 * 17 15 13 30 30 H 1.08996 * 113.98855 * 1.27117 * 17 15 13 31 31 H 1.08005 * 119.83248 * 0.02562 * 19 18 17 32 32 H 1.08001 * 119.91875 * 180.02562 * 20 19 18 33 33 H 1.08005 * 119.93922 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6531 -1.5887 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9436 0.8302 -2.6033 8 14 2.3224 -1.1196 -4.0079 9 1 1.3447 -2.1616 -4.4123 10 1 2.4873 -0.1404 -5.1120 11 1 3.6307 -1.7568 -3.7119 12 8 2.0139 -0.6846 1.1856 13 6 2.2171 0.0639 2.2811 14 8 1.9983 1.2518 2.2503 15 6 2.7192 -0.5772 3.5492 16 1 3.6001 -1.1972 3.3829 17 6 2.8896 0.4163 4.6987 18 6 1.7904 -0.3826 5.3672 19 6 0.9948 -0.5118 6.4991 20 6 0.0623 -1.5250 6.5835 21 6 -0.0875 -2.4206 5.5396 22 17 -1.2616 -3.6950 5.6461 23 6 0.7011 -2.2957 4.4105 24 6 1.6354 -1.2806 4.3260 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3635 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.7096 1.1617 -3.4844 29 1 3.8541 0.3503 5.2020 30 1 2.6048 1.4379 4.4474 31 1 1.1069 0.1845 7.3170 32 1 -0.5528 -1.6188 7.4662 33 1 0.5874 -2.9931 3.5937 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870205168.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:25:55 Heat of formation + Delta-G solvation = -51.848953 kcal Electronic energy + Delta-G solvation = -18980.135122 eV Core-core repulsion = 15804.281276 eV Total energy + Delta-G solvation = -3175.853846 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.065 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.28391 -40.66487 -38.08395 -37.51798 -35.96173 -35.35312 -31.99833 -31.70582 -28.83132 -27.50664 -26.73920 -24.09675 -23.01294 -22.00591 -20.76096 -19.03134 -18.63462 -18.08849 -17.46021 -16.88317 -16.65541 -16.32171 -15.71725 -15.17141 -14.69564 -14.47368 -14.35697 -14.14274 -13.84766 -13.64799 -13.19727 -13.18242 -12.96104 -12.82504 -12.43846 -12.33935 -12.30244 -12.16498 -12.12357 -11.75633 -11.61208 -11.34572 -11.03304 -10.62177 -10.00409 -9.55623 -8.30568 -6.47789 -0.00506 0.15630 1.00839 1.23164 1.41456 1.43573 1.54737 1.94722 2.38872 2.53918 2.94885 3.00281 3.30883 3.32540 3.89448 3.94942 4.16973 4.30775 4.41559 4.48606 4.50498 4.72622 4.77337 4.78591 4.85591 4.99328 5.07153 5.11254 5.15455 5.45608 5.52648 5.58441 5.69853 5.87456 6.04213 6.56586 6.89126 7.24000 8.77289 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.021770 B = 0.004311 C = 0.003848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.884650 B = 6493.922557 C = 7274.591536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.217 3.783 3 H 0.010 0.990 4 C -0.549 4.549 5 H 0.068 0.932 6 C 0.017 3.983 7 N -0.917 5.917 8 Si 0.984 3.016 9 H -0.268 1.268 10 H -0.277 1.277 11 H -0.264 1.264 12 O -0.361 6.361 13 C 0.460 3.540 14 O -0.544 6.544 15 C -0.040 4.040 16 H 0.153 0.847 17 C -0.047 4.047 18 C -0.112 4.112 19 C -0.085 4.085 20 C -0.096 4.096 21 C -0.045 4.045 22 Cl -0.063 7.063 23 C -0.087 4.087 24 C -0.138 4.138 25 H 0.082 0.918 26 H 0.043 0.957 27 H 0.019 0.981 28 H 0.271 0.729 29 H 0.148 0.852 30 H 0.103 0.897 31 H 0.164 0.836 32 H 0.166 0.834 33 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.116 -5.533 19.185 19.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.164 3.836 3 H 0.028 0.972 4 C -0.586 4.586 5 H 0.086 0.914 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.807 3.193 9 H -0.193 1.193 10 H -0.202 1.202 11 H -0.188 1.188 12 O -0.277 6.277 13 C 0.304 3.696 14 O -0.435 6.435 15 C -0.059 4.059 16 H 0.171 0.829 17 C -0.083 4.083 18 C -0.112 4.112 19 C -0.103 4.103 20 C -0.115 4.115 21 C -0.071 4.071 22 Cl -0.034 7.034 23 C -0.105 4.105 24 C -0.138 4.138 25 H 0.101 0.899 26 H 0.062 0.938 27 H 0.038 0.962 28 H 0.081 0.919 29 H 0.166 0.834 30 H 0.121 0.879 31 H 0.182 0.818 32 H 0.183 0.817 33 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 0.826 -5.193 19.006 19.720 hybrid contribution -0.244 -0.283 -1.291 1.344 sum 0.582 -5.476 17.714 18.551 Atomic orbital electron populations 1.21975 0.97017 1.00200 1.00655 1.20367 0.91834 0.92198 0.79167 0.97185 1.21286 1.33532 1.13949 0.89881 0.91392 1.25836 0.94656 0.95620 1.02149 1.70017 1.36573 1.23607 1.25278 0.85170 0.79043 0.78096 0.77039 1.19312 1.20174 1.18827 1.86486 1.75874 1.43821 1.21485 1.23928 0.73895 0.85592 0.86182 1.90569 1.49821 1.18176 1.84938 1.21287 0.98488 0.97765 0.88315 0.82933 1.21886 0.98701 0.97818 0.89888 1.22641 0.97567 0.96493 0.94505 1.20819 0.93795 0.98073 0.97615 1.21254 0.98692 0.93172 0.98349 1.20718 0.95380 0.94324 0.96703 1.98369 1.56763 1.50071 1.98179 1.20169 0.94534 0.98200 0.97634 1.21132 0.97967 0.96901 0.97805 0.89917 0.93811 0.96200 0.91938 0.83443 0.87917 0.81801 0.81695 0.85573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.48 9.33 71.98 0.67 -6.81 16 2 C 0.22 12.16 2.56 29.85 0.08 12.24 16 3 H 0.01 0.64 7.16 -2.39 -0.02 0.62 16 4 C -0.55 -31.45 8.90 25.60 0.23 -31.22 16 5 H 0.07 3.80 7.81 -2.91 -0.02 3.78 16 6 C 0.02 0.95 5.30 84.65 0.45 1.40 16 7 N -0.92 -52.93 11.32 21.45 0.24 -52.69 16 8 Si 0.98 42.93 29.54 68.60 2.03 44.96 16 9 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 10 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 11 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 12 O -0.36 -17.71 9.86 -51.35 -0.51 -18.22 16 13 C 0.46 19.40 7.43 71.24 0.53 19.93 16 14 O -0.54 -25.91 14.88 21.96 0.33 -25.58 16 15 C -0.04 -1.16 4.26 -14.65 -0.06 -1.22 16 16 H 0.15 3.57 8.14 -2.39 -0.02 3.55 16 17 C -0.05 -1.03 7.91 30.04 0.24 -0.79 16 18 C -0.11 -2.59 7.32 -21.78 -0.16 -2.75 16 19 C -0.09 -1.56 10.04 22.37 0.22 -1.34 16 20 C -0.10 -1.80 9.82 22.23 0.22 -1.59 16 21 C -0.04 -1.05 6.32 22.31 0.14 -0.91 16 22 Cl -0.06 -1.37 28.97 -2.72 -0.08 -1.45 16 23 C -0.09 -2.42 9.83 22.28 0.22 -2.20 16 24 C -0.14 -3.90 7.05 -19.82 -0.14 -4.04 16 25 H 0.08 4.68 6.07 -2.38 -0.01 4.66 16 26 H 0.04 2.20 8.14 -2.39 -0.02 2.18 16 27 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 29 H 0.15 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.10 2.61 7.02 -2.39 -0.02 2.59 16 31 H 0.16 1.87 8.06 -2.91 -0.02 1.84 16 32 H 0.17 2.09 8.06 -2.91 -0.02 2.06 16 33 H 0.13 3.62 8.06 -2.91 -0.02 3.60 16 Total: -1.00 -68.36 305.06 5.77 -62.58 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: 1.13 Total: 9.70 kcal Atomic # 6 Polarization: -21.93 SS G_CDS: 2.63 Total: -19.30 kcal Atomic # 7 Polarization: -52.93 SS G_CDS: 0.24 Total: -52.69 kcal Atomic # 8 Polarization: -43.62 SS G_CDS: -0.18 Total: -43.80 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Atomic # 17 Polarization: -1.37 SS G_CDS: -0.08 Total: -1.45 kcal Total: -68.36 5.77 -62.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870205168.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.734 kcal (2) G-P(sol) polarization free energy of solvation -68.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds