Wall clock time and date at job start Tue Mar 31 2020 01:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47427 * 2 1 4 4 C 1.50709 * 109.47072 * 240.00936 * 2 1 3 5 5 H 1.07999 * 120.00081 * 239.99737 * 4 2 1 6 6 C 1.37881 * 119.99918 * 59.99470 * 4 2 1 7 7 N 1.31509 * 120.00070 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 119.99729 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47409 * 60.00385 * 8 6 4 10 10 H 1.48502 * 109.47203 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47480 * 299.99937 * 8 6 4 12 12 O 1.45192 * 109.47598 * 120.00992 * 2 1 3 13 13 C 1.34232 * 116.99931 * 269.99621 * 12 2 1 14 14 O 1.20826 * 119.99632 * 0.02562 * 13 12 2 15 15 C 1.50701 * 120.00243 * 179.97438 * 13 12 2 16 16 H 1.09003 * 113.22915 * 312.47639 * 15 13 12 17 17 C 1.52884 * 113.99047 * 180.02562 * 15 13 12 18 18 C 1.50766 * 89.76137 * 246.05548 * 17 15 13 19 19 C 1.38245 * 149.31631 * 180.02562 * 18 17 15 20 20 C 1.38151 * 120.13954 * 179.97438 * 19 18 17 21 21 C 1.38357 * 119.73936 * 359.97438 * 20 19 18 22 22 Cl 1.73593 * 119.92773 * 180.02562 * 21 20 19 23 23 C 1.38096 * 120.14700 * 0.02562 * 21 20 19 24 24 C 1.38362 * 90.24785 * 0.02562 * 18 17 15 25 25 H 1.08993 * 109.47395 * 59.99552 * 1 2 3 26 26 H 1.09007 * 109.46854 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47027 * 299.99073 * 1 2 3 28 28 H 0.96995 * 120.00307 * 179.97438 * 7 6 4 29 29 H 1.08997 * 113.16469 * 130.83343 * 17 15 13 30 30 H 1.08998 * 113.16376 * 1.27997 * 17 15 13 31 31 H 1.08005 * 119.93354 * 359.97438 * 19 18 17 32 32 H 1.08007 * 120.13094 * 180.02562 * 20 19 18 33 33 H 1.07995 * 119.84803 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2307 5 1 2.6532 -1.5883 -1.1317 6 6 1.6991 -0.2390 -2.4829 7 7 0.9434 0.8305 -2.6033 8 14 2.3212 -1.1198 -4.0081 9 1 1.8256 -2.5197 -4.0082 10 1 1.8267 -0.4192 -5.2206 11 1 3.8061 -1.1203 -4.0085 12 8 2.0140 -0.6846 1.1853 13 6 2.2173 0.0637 2.2810 14 8 1.9975 1.2514 2.2506 15 6 2.7185 -0.5776 3.5493 16 1 2.1765 -1.4852 3.8154 17 6 2.9006 0.4001 4.7104 18 6 4.3894 0.1667 4.6652 19 6 5.6504 0.4331 5.1654 20 6 6.7585 -0.1842 4.6180 21 6 6.6013 -1.0706 3.5673 22 17 7.9903 -1.8495 2.8762 23 6 5.3420 -1.3371 3.0672 24 6 4.2249 -0.7178 3.6139 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 0.7092 1.1622 -3.4842 29 1 2.4406 0.0562 5.6367 30 1 2.6190 1.4225 4.4582 31 1 5.7695 1.1252 5.9859 32 1 7.7435 0.0237 5.0092 33 1 5.2249 -2.0295 2.2467 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870205170.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:25:58 Heat of formation + Delta-G solvation = -36.427575 kcal Electronic energy + Delta-G solvation = -18962.196133 eV Core-core repulsion = 15787.011008 eV Total energy + Delta-G solvation = -3175.185125 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.065 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.04369 -39.14796 -36.96283 -35.89996 -34.83917 -33.27995 -30.95987 -29.70071 -27.79367 -25.60124 -25.28328 -22.75986 -21.59349 -20.56866 -19.33821 -17.46010 -16.96440 -16.65252 -15.86618 -15.65877 -15.07691 -14.62871 -14.50242 -13.78636 -13.64551 -13.23851 -13.06337 -12.62645 -12.36662 -12.03776 -11.78353 -11.47824 -11.31011 -11.22354 -11.06508 -10.95221 -10.86065 -10.67560 -10.41825 -10.30264 -9.87140 -9.59151 -8.97676 -8.94458 -8.58549 -8.50217 -6.19942 -4.27016 0.97843 1.13920 2.01017 2.78446 3.25937 3.28330 3.30284 3.38427 3.64322 4.02918 4.27612 4.32844 4.40849 4.84536 5.13125 5.13970 5.22005 5.35299 5.47634 5.59841 5.66802 5.82885 5.98414 5.99534 6.09955 6.50808 6.59762 6.64561 6.85059 6.87022 7.11218 7.56683 7.69204 7.89101 8.10788 8.56607 8.84153 9.38398 10.87505 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.016620 B = 0.005022 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.320517 B = 5574.228201 C = 6965.766343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.215 3.785 3 H 0.047 0.953 4 C -0.522 4.522 5 H 0.068 0.932 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.912 3.088 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.274 1.274 12 O -0.350 6.350 13 C 0.471 3.529 14 O -0.513 6.513 15 C -0.045 4.045 16 H 0.134 0.866 17 C -0.057 4.057 18 C -0.114 4.114 19 C -0.083 4.083 20 C -0.103 4.103 21 C -0.036 4.036 22 Cl -0.069 7.069 23 C -0.075 4.075 24 C -0.104 4.104 25 H 0.100 0.900 26 H 0.037 0.963 27 H 0.016 0.984 28 H 0.267 0.733 29 H 0.100 0.900 30 H 0.111 0.889 31 H 0.131 0.869 32 H 0.138 0.862 33 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.186 -3.302 15.435 17.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.163 3.837 3 H 0.064 0.936 4 C -0.560 4.560 5 H 0.087 0.913 6 C -0.139 4.139 7 N -0.527 5.527 8 Si 0.738 3.262 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.200 1.200 12 O -0.266 6.266 13 C 0.313 3.687 14 O -0.402 6.402 15 C -0.064 4.064 16 H 0.152 0.848 17 C -0.094 4.094 18 C -0.114 4.114 19 C -0.101 4.101 20 C -0.121 4.121 21 C -0.063 4.063 22 Cl -0.040 7.040 23 C -0.093 4.093 24 C -0.104 4.104 25 H 0.118 0.882 26 H 0.057 0.943 27 H 0.035 0.965 28 H 0.077 0.923 29 H 0.119 0.881 30 H 0.130 0.870 31 H 0.149 0.851 32 H 0.156 0.844 33 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 8.155 -2.907 15.141 17.442 hybrid contribution 0.417 -0.449 -1.070 1.233 sum 8.572 -3.356 14.072 16.815 Atomic orbital electron populations 1.22168 0.97428 1.00193 1.01481 1.20681 0.91446 0.93925 0.77653 0.93553 1.20976 1.32616 1.13535 0.88846 0.91350 1.24876 0.94885 0.95081 0.99046 1.69881 1.35992 1.22490 1.24332 0.86333 0.79266 0.79558 0.80997 1.19888 1.20988 1.19962 1.86486 1.75395 1.43528 1.21199 1.22525 0.74825 0.85706 0.85680 1.90600 1.48629 1.16602 1.84404 1.21030 0.91967 1.00852 0.92572 0.84848 1.21570 0.88954 1.01725 0.97128 1.21826 0.95692 0.97067 0.96844 1.20054 0.89504 1.00133 1.00450 1.20923 0.99359 0.96283 0.95566 1.20561 0.88119 0.99501 0.98078 1.98369 1.41470 1.79983 1.84211 1.20494 0.89346 0.99791 0.99707 1.21718 0.93564 0.97898 0.97240 0.88166 0.94342 0.96467 0.92309 0.88145 0.87048 0.85109 0.84433 0.84579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.90 9.33 37.15 0.35 -3.55 16 2 C 0.22 5.78 2.56 -27.88 -0.07 5.71 16 3 H 0.05 1.38 7.16 -51.93 -0.37 1.01 16 4 C -0.52 -14.68 8.90 -34.43 -0.31 -14.99 16 5 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -25.26 11.32 55.43 0.63 -24.63 16 8 Si 0.91 21.16 29.54 -169.99 -5.02 16.14 16 9 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 12 O -0.35 -8.30 9.86 -39.26 -0.39 -8.68 16 13 C 0.47 9.68 7.49 36.01 0.27 9.95 16 14 O -0.51 -11.83 14.94 -18.75 -0.28 -12.11 16 15 C -0.05 -0.67 4.58 -92.63 -0.42 -1.09 16 16 H 0.13 1.60 8.14 -51.93 -0.42 1.17 16 17 C -0.06 -0.70 7.54 -31.54 -0.24 -0.93 16 18 C -0.11 -1.47 7.59 -104.54 -0.79 -2.26 16 19 C -0.08 -0.92 10.04 -39.61 -0.40 -1.31 16 20 C -0.10 -1.14 9.84 -39.57 -0.39 -1.53 16 21 C -0.04 -0.47 6.31 -39.59 -0.25 -0.72 16 22 Cl -0.07 -0.84 28.95 -51.86 -1.50 -2.34 16 23 C -0.07 -1.09 9.83 -39.37 -0.39 -1.48 16 24 C -0.10 -1.53 6.82 -107.59 -0.73 -2.27 16 25 H 0.10 2.70 6.07 -51.93 -0.32 2.38 16 26 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 29 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.11 1.50 7.04 -51.93 -0.37 1.14 16 31 H 0.13 1.06 8.06 -52.48 -0.42 0.64 16 32 H 0.14 1.17 8.06 -52.48 -0.42 0.75 16 33 H 0.14 1.98 8.06 -52.49 -0.42 1.56 16 LS Contribution 305.18 15.07 4.60 4.60 Total: -1.00 -30.81 305.18 -8.99 -39.80 By element: Atomic # 1 Polarization: 3.60 SS G_CDS: -3.56 Total: 0.04 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: -3.47 Total: -12.82 kcal Atomic # 7 Polarization: -25.26 SS G_CDS: 0.63 Total: -24.63 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: -0.67 Total: -20.79 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -1.50 Total: -2.34 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.81 -8.99 -39.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870205170.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.373 kcal (2) G-P(sol) polarization free energy of solvation -30.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds