Wall clock time and date at job start Tue Mar 31 2020 01:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47427 * 2 1 4 4 C 1.50709 * 109.47072 * 240.00936 * 2 1 3 5 5 H 1.07999 * 120.00081 * 239.99737 * 4 2 1 6 6 C 1.37881 * 119.99918 * 59.99470 * 4 2 1 7 7 N 1.31509 * 120.00070 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 119.99729 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47409 * 60.00385 * 8 6 4 10 10 H 1.48502 * 109.47203 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47480 * 299.99937 * 8 6 4 12 12 O 1.45192 * 109.47598 * 120.00992 * 2 1 3 13 13 C 1.34232 * 116.99931 * 269.99621 * 12 2 1 14 14 O 1.20826 * 119.99632 * 0.02562 * 13 12 2 15 15 C 1.50701 * 120.00243 * 179.97438 * 13 12 2 16 16 H 1.09003 * 113.22915 * 312.47639 * 15 13 12 17 17 C 1.52884 * 113.99047 * 180.02562 * 15 13 12 18 18 C 1.50766 * 89.76137 * 246.05548 * 17 15 13 19 19 C 1.38245 * 149.31631 * 180.02562 * 18 17 15 20 20 C 1.38151 * 120.13954 * 179.97438 * 19 18 17 21 21 C 1.38357 * 119.73936 * 359.97438 * 20 19 18 22 22 Cl 1.73593 * 119.92773 * 180.02562 * 21 20 19 23 23 C 1.38096 * 120.14700 * 0.02562 * 21 20 19 24 24 C 1.38362 * 90.24785 * 0.02562 * 18 17 15 25 25 H 1.08993 * 109.47395 * 59.99552 * 1 2 3 26 26 H 1.09007 * 109.46854 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47027 * 299.99073 * 1 2 3 28 28 H 0.96995 * 120.00307 * 179.97438 * 7 6 4 29 29 H 1.08997 * 113.16469 * 130.83343 * 17 15 13 30 30 H 1.08998 * 113.16376 * 1.27997 * 17 15 13 31 31 H 1.08005 * 119.93354 * 359.97438 * 19 18 17 32 32 H 1.08007 * 120.13094 * 180.02562 * 20 19 18 33 33 H 1.07995 * 119.84803 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2307 5 1 2.6532 -1.5883 -1.1317 6 6 1.6991 -0.2390 -2.4829 7 7 0.9434 0.8305 -2.6033 8 14 2.3212 -1.1198 -4.0081 9 1 1.8256 -2.5197 -4.0082 10 1 1.8267 -0.4192 -5.2206 11 1 3.8061 -1.1203 -4.0085 12 8 2.0140 -0.6846 1.1853 13 6 2.2173 0.0637 2.2810 14 8 1.9975 1.2514 2.2506 15 6 2.7185 -0.5776 3.5493 16 1 2.1765 -1.4852 3.8154 17 6 2.9006 0.4001 4.7104 18 6 4.3894 0.1667 4.6652 19 6 5.6504 0.4331 5.1654 20 6 6.7585 -0.1842 4.6180 21 6 6.6013 -1.0706 3.5673 22 17 7.9903 -1.8495 2.8762 23 6 5.3420 -1.3371 3.0672 24 6 4.2249 -0.7178 3.6139 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 0.7092 1.1622 -3.4842 29 1 2.4406 0.0562 5.6367 30 1 2.6190 1.4225 4.4582 31 1 5.7695 1.1252 5.9859 32 1 7.7435 0.0237 5.0092 33 1 5.2249 -2.0295 2.2467 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870205170.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:25:57 Heat of formation + Delta-G solvation = -52.023137 kcal Electronic energy + Delta-G solvation = -18962.872407 eV Core-core repulsion = 15787.011008 eV Total energy + Delta-G solvation = -3175.861399 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.065 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.25457 -40.69517 -38.08376 -37.52092 -35.96911 -35.35847 -31.99555 -31.69279 -28.90887 -27.48945 -26.70652 -24.08038 -23.00198 -21.98876 -20.79858 -19.03358 -18.62552 -18.07498 -17.49635 -16.94524 -16.63610 -16.31841 -15.69158 -15.20038 -14.70253 -14.49984 -14.33686 -14.18181 -13.93967 -13.55786 -13.24605 -13.14131 -12.95194 -12.83682 -12.43819 -12.39993 -12.28602 -12.18180 -11.94836 -11.76155 -11.62504 -11.41541 -11.03307 -10.62383 -9.99590 -9.56992 -8.31272 -6.48243 -0.01109 0.14911 1.01542 1.21370 1.39570 1.43193 1.51163 1.92248 2.37328 2.54156 2.96524 2.99994 3.27065 3.33719 3.89859 3.93806 4.15786 4.32076 4.43128 4.50675 4.51544 4.76043 4.77793 4.80196 4.84666 4.97198 5.03412 5.13309 5.14806 5.45537 5.52514 5.60371 5.70782 5.88359 6.03940 6.55502 6.88551 7.23268 8.76229 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.016620 B = 0.005022 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.320517 B = 5574.228201 C = 6965.766343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.217 3.783 3 H 0.006 0.994 4 C -0.550 4.550 5 H 0.065 0.935 6 C 0.019 3.981 7 N -0.915 5.915 8 Si 0.980 3.020 9 H -0.263 1.263 10 H -0.275 1.275 11 H -0.271 1.271 12 O -0.360 6.360 13 C 0.464 3.536 14 O -0.543 6.543 15 C -0.045 4.045 16 H 0.163 0.837 17 C -0.044 4.044 18 C -0.113 4.113 19 C -0.078 4.078 20 C -0.094 4.094 21 C -0.047 4.047 22 Cl -0.066 7.066 23 C -0.096 4.096 24 C -0.137 4.137 25 H 0.081 0.919 26 H 0.047 0.953 27 H 0.027 0.973 28 H 0.272 0.728 29 H 0.143 0.857 30 H 0.097 0.903 31 H 0.168 0.832 32 H 0.168 0.832 33 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.201 -3.807 16.877 19.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.164 3.836 3 H 0.024 0.976 4 C -0.588 4.588 5 H 0.083 0.917 6 C -0.181 4.181 7 N -0.553 5.553 8 Si 0.803 3.197 9 H -0.187 1.187 10 H -0.200 1.200 11 H -0.196 1.196 12 O -0.276 6.276 13 C 0.308 3.692 14 O -0.434 6.434 15 C -0.064 4.064 16 H 0.180 0.820 17 C -0.080 4.080 18 C -0.113 4.113 19 C -0.095 4.095 20 C -0.112 4.112 21 C -0.073 4.073 22 Cl -0.038 7.038 23 C -0.115 4.115 24 C -0.137 4.137 25 H 0.100 0.900 26 H 0.066 0.934 27 H 0.046 0.954 28 H 0.081 0.919 29 H 0.161 0.839 30 H 0.115 0.885 31 H 0.185 0.815 32 H 0.186 0.814 33 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 9.169 -3.416 16.608 19.276 hybrid contribution 0.169 -0.247 -1.450 1.481 sum 9.339 -3.663 15.158 18.176 Atomic orbital electron populations 1.21981 0.96380 1.00570 1.01032 1.20370 0.92249 0.91923 0.79042 0.97632 1.21250 1.33561 1.13944 0.90038 0.91692 1.25796 0.94661 0.95647 1.02034 1.69997 1.36444 1.23514 1.25344 0.85275 0.78698 0.78780 0.76939 1.18707 1.19969 1.19587 1.86479 1.75874 1.43764 1.21491 1.23712 0.73626 0.85552 0.86266 1.90574 1.49858 1.18042 1.84939 1.21227 0.92551 1.02507 0.90078 0.82001 1.21571 0.88809 1.00188 0.97474 1.22063 0.96727 0.96262 0.96232 1.20487 0.88404 0.99859 1.00791 1.21339 1.00944 0.94701 0.94230 1.20721 0.87645 1.00180 0.98799 1.98367 1.41008 1.80050 1.84333 1.20559 0.90421 1.00447 1.00069 1.21816 0.93269 0.99713 0.98947 0.90034 0.93389 0.95394 0.91905 0.83905 0.88509 0.81457 0.81412 0.85974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.32 9.33 71.98 0.67 -6.65 16 2 C 0.22 12.12 2.56 29.85 0.08 12.20 16 3 H 0.01 0.37 7.16 -2.39 -0.02 0.35 16 4 C -0.55 -31.77 8.90 25.60 0.23 -31.55 16 5 H 0.06 3.69 7.81 -2.91 -0.02 3.66 16 6 C 0.02 1.04 5.30 84.66 0.45 1.49 16 7 N -0.92 -52.91 11.32 21.45 0.24 -52.67 16 8 Si 0.98 43.38 29.54 68.60 2.03 45.40 16 9 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 10 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 11 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 12 O -0.36 -17.61 9.86 -51.43 -0.51 -18.12 16 13 C 0.46 19.53 7.49 71.24 0.53 20.06 16 14 O -0.54 -25.88 14.94 21.96 0.33 -25.55 16 15 C -0.05 -1.30 4.58 -12.09 -0.06 -1.36 16 16 H 0.16 3.61 8.14 -2.39 -0.02 3.59 16 17 C -0.04 -0.98 7.54 27.48 0.21 -0.77 16 18 C -0.11 -2.65 7.59 -19.81 -0.15 -2.80 16 19 C -0.08 -1.44 10.04 22.25 0.22 -1.22 16 20 C -0.09 -1.81 9.84 22.28 0.22 -1.59 16 21 C -0.05 -1.16 6.31 22.26 0.14 -1.02 16 22 Cl -0.07 -1.55 28.95 -2.72 -0.08 -1.63 16 23 C -0.10 -2.81 9.83 22.40 0.22 -2.59 16 24 C -0.14 -3.96 6.82 -21.78 -0.15 -4.11 16 25 H 0.08 4.51 6.07 -2.39 -0.01 4.50 16 26 H 0.05 2.32 8.14 -2.38 -0.02 2.30 16 27 H 0.03 1.31 8.14 -2.39 -0.02 1.30 16 28 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 29 H 0.14 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.10 2.49 7.04 -2.39 -0.02 2.47 16 31 H 0.17 1.89 8.06 -2.91 -0.02 1.87 16 32 H 0.17 2.19 8.06 -2.91 -0.02 2.16 16 33 H 0.12 3.75 8.06 -2.91 -0.02 3.72 16 Total: -1.00 -68.89 305.18 5.76 -63.13 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: 1.13 Total: 9.33 kcal Atomic # 6 Polarization: -22.52 SS G_CDS: 2.61 Total: -19.90 kcal Atomic # 7 Polarization: -52.91 SS G_CDS: 0.24 Total: -52.67 kcal Atomic # 8 Polarization: -43.49 SS G_CDS: -0.18 Total: -43.67 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.40 kcal Atomic # 17 Polarization: -1.55 SS G_CDS: -0.08 Total: -1.63 kcal Total: -68.89 5.76 -63.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870205170.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.108 kcal (2) G-P(sol) polarization free energy of solvation -68.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds