Wall clock time and date at job start Tue Mar 31 2020 01:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47209 * 89.99886 * 8 6 4 10 10 H 1.48501 * 109.47358 * 209.99377 * 8 6 4 11 11 H 1.48496 * 109.47341 * 329.99989 * 8 6 4 12 12 O 1.45200 * 109.47076 * 240.00601 * 2 1 3 13 13 C 1.34225 * 117.00537 * 89.99893 * 12 2 1 14 14 O 1.20829 * 119.99778 * 0.02562 * 13 12 2 15 15 C 1.50693 * 120.00501 * 180.02562 * 13 12 2 16 16 H 1.09000 * 112.82669 * 48.88941 * 15 13 12 17 17 C 1.53529 * 113.58971 * 180.02562 * 15 13 12 18 18 C 1.51618 * 87.24641 * 114.58998 * 17 15 13 19 19 C 1.38385 * 147.50626 * 179.97438 * 18 17 15 20 20 C 1.38070 * 120.34330 * 180.02562 * 19 18 17 21 21 C 1.38360 * 119.94238 * 0.03234 * 20 19 18 22 22 Cl 1.73608 * 120.03848 * 180.02562 * 21 20 19 23 23 C 1.38214 * 119.92788 * 359.97438 * 21 20 19 24 24 C 1.38352 * 120.31644 * 359.97438 * 23 21 20 25 25 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 26 26 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 27 27 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 28 28 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 29 29 H 1.08992 * 113.58472 * 229.18171 * 17 15 13 30 30 H 1.08994 * 113.58526 * 0.02562 * 17 15 13 31 31 H 1.07999 * 119.82892 * 0.02731 * 19 18 17 32 32 H 1.07998 * 120.03085 * 180.02562 * 20 19 18 33 33 H 1.08003 * 119.84426 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 0.9386 0.8265 2.6034 8 14 2.3109 -1.1280 4.0077 9 1 3.6178 -0.5548 4.4187 10 1 1.3286 -0.9599 5.1087 11 1 2.4765 -2.5731 3.7084 12 8 2.0140 -0.6844 -1.1856 13 6 2.2171 0.0641 -2.2811 14 8 1.9982 1.2520 -2.2503 15 6 2.7182 -0.5770 -3.5495 16 1 2.1564 -1.4703 -3.8223 17 6 2.8988 0.4134 -4.7087 18 6 4.3850 0.1248 -4.6272 19 6 5.6517 0.3757 -5.1247 20 6 6.7519 -0.2596 -4.5841 21 6 6.5897 -1.1527 -3.5398 22 17 7.9714 -1.9524 -2.8577 23 6 5.3265 -1.4067 -3.0396 24 6 4.2215 -0.7714 -3.5777 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 0.7006 1.1552 3.4844 29 1 2.4406 0.0823 -5.6406 30 1 2.6394 1.4399 -4.4497 31 1 5.7804 1.0721 -5.9401 32 1 7.7382 -0.0598 -4.9760 33 1 5.2014 -2.1043 -2.2247 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870205177.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:26:02 Heat of formation + Delta-G solvation = -37.886487 kcal Electronic energy + Delta-G solvation = -18966.677669 eV Core-core repulsion = 15791.429281 eV Total energy + Delta-G solvation = -3175.248388 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.065 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.95147 -39.12791 -36.94098 -35.89368 -34.78915 -33.27998 -30.97576 -29.69193 -27.75818 -25.60584 -25.28401 -22.76533 -21.56917 -20.59265 -19.32784 -17.44791 -16.94260 -16.64775 -15.86712 -15.65676 -15.04762 -14.62587 -14.49273 -13.77126 -13.62996 -13.22577 -13.05436 -12.61132 -12.36220 -12.01646 -11.77989 -11.43849 -11.32202 -11.21036 -11.07172 -11.04655 -10.87268 -10.66696 -10.38913 -10.30438 -9.85444 -9.59300 -8.98603 -8.93484 -8.57075 -8.50227 -6.20049 -4.27000 0.97414 1.15704 2.00367 2.79682 3.24120 3.28831 3.32117 3.39872 3.64774 4.03092 4.24829 4.32819 4.38877 4.85411 5.13125 5.14778 5.21989 5.34735 5.47473 5.60019 5.66804 5.82715 5.99753 6.01512 6.10446 6.51718 6.59854 6.64932 6.85224 6.87225 7.11585 7.56964 7.69352 7.89387 8.10949 8.56931 8.84569 9.38511 10.87419 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.016522 B = 0.005048 C = 0.004029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.289623 B = 5544.906317 C = 6948.381940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.215 3.785 3 H 0.047 0.953 4 C -0.521 4.521 5 H 0.069 0.931 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.911 3.089 9 H -0.278 1.278 10 H -0.283 1.283 11 H -0.271 1.271 12 O -0.351 6.351 13 C 0.469 3.531 14 O -0.513 6.513 15 C -0.042 4.042 16 H 0.131 0.869 17 C -0.057 4.057 18 C -0.114 4.114 19 C -0.087 4.087 20 C -0.104 4.104 21 C -0.035 4.035 22 Cl -0.068 7.068 23 C -0.071 4.071 24 C -0.104 4.104 25 H 0.100 0.900 26 H 0.016 0.984 27 H 0.037 0.963 28 H 0.266 0.734 29 H 0.103 0.897 30 H 0.114 0.886 31 H 0.130 0.870 32 H 0.137 0.863 33 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.169 -3.402 -15.416 17.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.163 3.837 3 H 0.064 0.936 4 C -0.559 4.559 5 H 0.087 0.913 6 C -0.139 4.139 7 N -0.527 5.527 8 Si 0.738 3.262 9 H -0.204 1.204 10 H -0.209 1.209 11 H -0.195 1.195 12 O -0.266 6.266 13 C 0.311 3.689 14 O -0.403 6.403 15 C -0.061 4.061 16 H 0.149 0.851 17 C -0.094 4.094 18 C -0.114 4.114 19 C -0.105 4.105 20 C -0.122 4.122 21 C -0.062 4.062 22 Cl -0.039 7.039 23 C -0.090 4.090 24 C -0.104 4.104 25 H 0.119 0.881 26 H 0.035 0.965 27 H 0.056 0.944 28 H 0.076 0.924 29 H 0.121 0.879 30 H 0.132 0.868 31 H 0.148 0.852 32 H 0.155 0.845 33 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 8.137 -3.015 -15.126 17.439 hybrid contribution 0.410 -0.436 1.069 1.225 sum 8.547 -3.451 -14.058 16.810 Atomic orbital electron populations 1.22170 0.97434 1.00185 1.01493 1.20685 0.91446 0.93933 0.77681 0.93562 1.21014 1.32433 1.13583 0.88840 0.91301 1.24877 0.94870 0.95112 0.99055 1.69892 1.35978 1.22632 1.24204 0.86280 0.78567 0.79954 0.81406 1.20370 1.20904 1.19550 1.86488 1.75396 1.43535 1.21213 1.22615 0.74800 0.85763 0.85770 1.90599 1.48668 1.16605 1.84437 1.21234 0.91936 1.00523 0.92434 0.85138 1.21903 0.88836 1.01524 0.97120 1.22356 0.95455 0.96935 0.96664 1.20172 0.89865 1.00057 1.00449 1.20889 0.99412 0.96207 0.95705 1.20569 0.88189 0.99259 0.98170 1.98370 1.41996 1.79014 1.84542 1.20233 0.89141 0.99876 0.99750 1.21588 0.93878 0.97744 0.97232 0.88141 0.96479 0.94352 0.92373 0.87882 0.86804 0.85228 0.84531 0.84542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.91 9.32 37.16 0.35 -3.56 16 2 C 0.21 5.77 2.56 -27.88 -0.07 5.70 16 3 H 0.05 1.38 7.16 -51.93 -0.37 1.00 16 4 C -0.52 -14.66 8.90 -34.44 -0.31 -14.97 16 5 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -25.27 11.31 55.43 0.63 -24.65 16 8 Si 0.91 21.17 29.54 -169.99 -5.02 16.15 16 9 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 11 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 12 O -0.35 -8.31 9.86 -39.24 -0.39 -8.70 16 13 C 0.47 9.64 7.47 36.00 0.27 9.91 16 14 O -0.51 -11.83 14.92 -18.75 -0.28 -12.11 16 15 C -0.04 -0.63 4.45 -92.22 -0.41 -1.04 16 16 H 0.13 1.57 8.14 -51.93 -0.42 1.15 16 17 C -0.06 -0.69 7.77 -27.18 -0.21 -0.90 16 18 C -0.11 -1.47 7.49 -103.86 -0.78 -2.25 16 19 C -0.09 -0.97 10.03 -39.59 -0.40 -1.36 16 20 C -0.10 -1.15 9.83 -39.60 -0.39 -1.54 16 21 C -0.04 -0.46 6.32 -39.55 -0.25 -0.71 16 22 Cl -0.07 -0.82 28.96 -51.86 -1.50 -2.32 16 23 C -0.07 -1.04 9.81 -39.55 -0.39 -1.43 16 24 C -0.10 -1.54 6.97 -103.87 -0.72 -2.26 16 25 H 0.10 2.71 6.06 -51.93 -0.31 2.39 16 26 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 29 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.11 1.52 7.05 -51.93 -0.37 1.15 16 31 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 32 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 33 H 0.14 1.98 8.06 -52.48 -0.42 1.55 16 LS Contribution 305.24 15.07 4.60 4.60 Total: -1.00 -30.86 305.24 -8.92 -39.79 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: -3.56 Total: 0.01 kcal Atomic # 6 Polarization: -9.36 SS G_CDS: -3.40 Total: -12.76 kcal Atomic # 7 Polarization: -25.27 SS G_CDS: 0.63 Total: -24.65 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: -0.67 Total: -20.81 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -1.50 Total: -2.32 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -30.86 -8.92 -39.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870205177.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.901 kcal (2) G-P(sol) polarization free energy of solvation -30.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds