Wall clock time and date at job start Tue Mar 31 2020 01:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47209 * 89.99886 * 8 6 4 10 10 H 1.48501 * 109.47358 * 209.99377 * 8 6 4 11 11 H 1.48496 * 109.47341 * 329.99989 * 8 6 4 12 12 O 1.45200 * 109.47076 * 240.00601 * 2 1 3 13 13 C 1.34225 * 117.00537 * 89.99893 * 12 2 1 14 14 O 1.20829 * 119.99778 * 0.02562 * 13 12 2 15 15 C 1.50693 * 120.00501 * 180.02562 * 13 12 2 16 16 H 1.09000 * 112.82669 * 48.88941 * 15 13 12 17 17 C 1.53529 * 113.58971 * 180.02562 * 15 13 12 18 18 C 1.51618 * 87.24641 * 114.58998 * 17 15 13 19 19 C 1.38385 * 147.50626 * 179.97438 * 18 17 15 20 20 C 1.38070 * 120.34330 * 180.02562 * 19 18 17 21 21 C 1.38360 * 119.94238 * 0.03234 * 20 19 18 22 22 Cl 1.73608 * 120.03848 * 180.02562 * 21 20 19 23 23 C 1.38214 * 119.92788 * 359.97438 * 21 20 19 24 24 C 1.38352 * 120.31644 * 359.97438 * 23 21 20 25 25 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 26 26 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 27 27 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 28 28 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 29 29 H 1.08992 * 113.58472 * 229.18171 * 17 15 13 30 30 H 1.08994 * 113.58526 * 0.02562 * 17 15 13 31 31 H 1.07999 * 119.82892 * 0.02731 * 19 18 17 32 32 H 1.07998 * 120.03085 * 180.02562 * 20 19 18 33 33 H 1.08003 * 119.84426 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 0.9386 0.8265 2.6034 8 14 2.3109 -1.1280 4.0077 9 1 3.6178 -0.5548 4.4187 10 1 1.3286 -0.9599 5.1087 11 1 2.4765 -2.5731 3.7084 12 8 2.0140 -0.6844 -1.1856 13 6 2.2171 0.0641 -2.2811 14 8 1.9982 1.2520 -2.2503 15 6 2.7182 -0.5770 -3.5495 16 1 2.1564 -1.4703 -3.8223 17 6 2.8988 0.4134 -4.7087 18 6 4.3850 0.1248 -4.6272 19 6 5.6517 0.3757 -5.1247 20 6 6.7519 -0.2596 -4.5841 21 6 6.5897 -1.1527 -3.5398 22 17 7.9714 -1.9524 -2.8577 23 6 5.3265 -1.4067 -3.0396 24 6 4.2215 -0.7714 -3.5777 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 0.7006 1.1552 3.4844 29 1 2.4406 0.0823 -5.6406 30 1 2.6394 1.4399 -4.4497 31 1 5.7804 1.0721 -5.9401 32 1 7.7382 -0.0598 -4.9760 33 1 5.2014 -2.1043 -2.2247 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870205177.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:26:02 Heat of formation + Delta-G solvation = -53.546714 kcal Electronic energy + Delta-G solvation = -18967.356748 eV Core-core repulsion = 15791.429281 eV Total energy + Delta-G solvation = -3175.927466 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.065 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.17984 -40.65520 -38.06464 -37.51502 -35.91797 -35.35902 -32.00475 -31.69305 -28.86631 -27.49269 -26.71276 -24.08791 -22.97810 -22.00181 -20.80058 -19.02031 -18.62410 -18.05747 -17.49281 -16.94945 -16.62089 -16.29194 -15.68867 -15.18795 -14.69236 -14.48356 -14.34585 -14.14213 -13.93919 -13.54223 -13.24304 -13.13583 -12.95248 -12.84561 -12.41360 -12.36303 -12.29733 -12.16819 -12.04144 -11.76028 -11.63220 -11.38438 -11.01987 -10.62989 -10.00781 -9.55371 -8.31499 -6.48345 -0.01271 0.16298 1.01163 1.22355 1.39530 1.41216 1.52821 1.93461 2.37425 2.54298 2.96673 2.99739 3.26390 3.31083 3.89911 3.94284 4.16333 4.31629 4.42335 4.50827 4.51869 4.76034 4.78014 4.80323 4.84991 4.98594 5.05977 5.13545 5.15261 5.45697 5.53183 5.60463 5.70782 5.88590 6.04158 6.55676 6.88927 7.23281 8.76204 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.016522 B = 0.005048 C = 0.004029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.289623 B = 5544.906317 C = 6948.381940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.217 3.783 3 H 0.006 0.994 4 C -0.549 4.549 5 H 0.065 0.935 6 C 0.018 3.982 7 N -0.915 5.915 8 Si 0.980 3.020 9 H -0.273 1.273 10 H -0.272 1.272 11 H -0.263 1.263 12 O -0.360 6.360 13 C 0.462 3.538 14 O -0.543 6.543 15 C -0.042 4.042 16 H 0.159 0.841 17 C -0.043 4.043 18 C -0.113 4.113 19 C -0.082 4.082 20 C -0.095 4.095 21 C -0.046 4.046 22 Cl -0.065 7.065 23 C -0.092 4.092 24 C -0.138 4.138 25 H 0.081 0.919 26 H 0.027 0.973 27 H 0.047 0.953 28 H 0.272 0.728 29 H 0.146 0.854 30 H 0.100 0.900 31 H 0.166 0.834 32 H 0.167 0.833 33 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.167 -3.889 -16.846 19.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.164 3.836 3 H 0.024 0.976 4 C -0.587 4.587 5 H 0.083 0.917 6 C -0.182 4.182 7 N -0.553 5.553 8 Si 0.803 3.197 9 H -0.199 1.199 10 H -0.197 1.197 11 H -0.187 1.187 12 O -0.277 6.277 13 C 0.306 3.694 14 O -0.435 6.435 15 C -0.061 4.061 16 H 0.177 0.823 17 C -0.079 4.079 18 C -0.113 4.113 19 C -0.100 4.100 20 C -0.113 4.113 21 C -0.073 4.073 22 Cl -0.036 7.036 23 C -0.111 4.111 24 C -0.139 4.139 25 H 0.100 0.900 26 H 0.046 0.954 27 H 0.066 0.934 28 H 0.081 0.919 29 H 0.164 0.836 30 H 0.118 0.882 31 H 0.184 0.816 32 H 0.184 0.816 33 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 9.136 -3.505 -16.581 19.253 hybrid contribution 0.163 -0.240 1.447 1.476 sum 9.299 -3.745 -15.134 18.153 Atomic orbital electron populations 1.21983 0.96390 1.00560 1.01043 1.20372 0.92244 0.91930 0.79068 0.97634 1.21276 1.33389 1.13966 0.90042 0.91711 1.25795 0.94638 0.95688 1.02035 1.70004 1.36410 1.23648 1.25266 0.85223 0.78179 0.78964 0.77322 1.19870 1.19732 1.18711 1.86482 1.75881 1.43786 1.21513 1.23816 0.73599 0.85616 0.86353 1.90573 1.49884 1.18029 1.84966 1.21466 0.92491 1.02168 0.89926 0.82350 1.21933 0.88566 0.99967 0.97465 1.22571 0.96550 0.96147 0.96050 1.20591 0.88796 0.99836 1.00773 1.21301 1.00974 0.94656 0.94390 1.20723 0.87726 0.99948 0.98881 1.98367 1.41517 1.79072 1.84654 1.20305 0.90204 1.00479 1.00102 1.21688 0.93631 0.99571 0.98963 0.90011 0.95403 0.93403 0.91913 0.83583 0.88216 0.81634 0.81551 0.85893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.33 9.32 71.98 0.67 -6.66 16 2 C 0.22 12.11 2.56 29.85 0.08 12.19 16 3 H 0.01 0.37 7.16 -2.38 -0.02 0.35 16 4 C -0.55 -31.73 8.90 25.60 0.23 -31.50 16 5 H 0.06 3.69 7.81 -2.91 -0.02 3.67 16 6 C 0.02 1.02 5.30 84.65 0.45 1.47 16 7 N -0.92 -52.93 11.31 21.45 0.24 -52.68 16 8 Si 0.98 43.42 29.54 68.60 2.03 45.44 16 9 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 10 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 11 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 12 O -0.36 -17.66 9.86 -51.37 -0.51 -18.17 16 13 C 0.46 19.42 7.47 71.23 0.53 19.96 16 14 O -0.54 -25.84 14.92 21.95 0.33 -25.52 16 15 C -0.04 -1.21 4.45 -11.83 -0.05 -1.26 16 16 H 0.16 3.56 8.14 -2.39 -0.02 3.54 16 17 C -0.04 -0.94 7.77 30.31 0.24 -0.71 16 18 C -0.11 -2.66 7.49 -19.37 -0.15 -2.81 16 19 C -0.08 -1.54 10.03 22.26 0.22 -1.32 16 20 C -0.09 -1.85 9.83 22.26 0.22 -1.63 16 21 C -0.05 -1.14 6.32 22.29 0.14 -1.00 16 22 Cl -0.07 -1.51 28.96 -2.72 -0.08 -1.59 16 23 C -0.09 -2.69 9.81 22.29 0.22 -2.47 16 24 C -0.14 -4.00 6.97 -19.38 -0.14 -4.14 16 25 H 0.08 4.53 6.06 -2.38 -0.01 4.51 16 26 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16 27 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 28 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 29 H 0.15 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.10 2.53 7.05 -2.39 -0.02 2.51 16 31 H 0.17 1.92 8.06 -2.91 -0.02 1.90 16 32 H 0.17 2.21 8.06 -2.91 -0.02 2.18 16 33 H 0.12 3.76 8.06 -2.91 -0.02 3.73 16 Total: -1.00 -68.96 305.24 5.80 -63.16 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: 1.13 Total: 9.25 kcal Atomic # 6 Polarization: -22.55 SS G_CDS: 2.66 Total: -19.89 kcal Atomic # 7 Polarization: -52.93 SS G_CDS: 0.24 Total: -52.68 kcal Atomic # 8 Polarization: -43.51 SS G_CDS: -0.18 Total: -43.69 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.44 kcal Atomic # 17 Polarization: -1.51 SS G_CDS: -0.08 Total: -1.59 kcal Total: -68.96 5.80 -63.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870205177.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.614 kcal (2) G-P(sol) polarization free energy of solvation -68.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds