Wall clock time and date at job start Tue Mar 31 2020 01:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38387 * 119.92539 * 2 1 4 4 C 1.38339 * 120.30791 * 179.72378 * 3 2 1 5 5 C 1.37965 * 120.14990 * 0.55779 * 4 3 2 6 6 S 1.76198 * 120.07918 * 179.74959 * 5 4 3 7 7 O 1.42106 * 106.40024 * 1.17570 * 6 5 4 8 8 O 1.42105 * 106.40118 * 228.26188 * 6 5 4 9 9 N 1.65596 * 107.22309 * 114.71779 * 6 5 4 10 10 C 1.46506 * 119.99677 * 65.00118 * 9 6 5 11 11 C 1.50699 * 109.46928 * 165.00101 * 10 9 6 12 12 H 1.08003 * 119.99963 * 0.02562 * 11 10 9 13 13 C 1.37873 * 119.99865 * 179.97438 * 11 10 9 14 14 N 1.31522 * 119.99749 * 179.97438 * 13 11 10 15 15 Si 1.86805 * 120.00236 * 0.02562 * 13 11 10 16 16 H 1.48496 * 109.47160 * 89.99730 * 15 13 11 17 17 H 1.48503 * 109.47061 * 209.99752 * 15 13 11 18 18 H 1.48500 * 109.46598 * 329.99398 * 15 13 11 19 19 C 1.39614 * 119.84708 * 359.46514 * 5 4 3 20 20 C 1.43201 * 120.15287 * 180.27696 * 19 5 4 21 21 N 4.80105 * 134.70674 * 180.02562 * 2 1 3 22 22 C 1.37923 * 119.92534 * 180.02562 * 2 1 3 23 23 H 1.09001 * 109.46887 * 269.97578 * 1 2 3 24 24 H 1.08998 * 109.47401 * 29.97251 * 1 2 3 25 25 H 1.08997 * 109.47458 * 149.97761 * 1 2 3 26 26 H 1.08003 * 119.84512 * 0.02700 * 3 2 1 27 27 H 1.08003 * 119.92779 * 180.27650 * 4 3 2 28 28 H 0.96996 * 120.00260 * 244.99697 * 9 6 5 29 29 H 1.09004 * 109.47073 * 284.99929 * 10 9 6 30 30 H 1.09000 * 109.47212 * 45.00012 * 10 9 6 31 31 H 0.97001 * 119.99269 * 180.02562 * 14 13 11 32 32 H 1.07999 * 120.07678 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1994 0.0000 4 6 3.5807 1.2086 0.0058 5 6 4.2816 0.0203 -0.0001 6 16 6.0435 0.0343 0.0006 7 8 6.4339 1.4002 0.0357 8 8 6.4523 -0.8648 -1.0211 9 7 6.5386 -0.6305 1.4342 10 6 6.2544 -2.0379 1.7258 11 6 7.1035 -2.4921 2.8849 12 1 7.7863 -1.8014 3.3575 13 6 7.0080 -3.7890 3.3429 14 7 7.7495 -4.1855 4.3542 15 14 5.8266 -4.9834 2.5261 16 1 6.5218 -5.6884 1.4194 17 1 5.3552 -5.9751 3.5260 18 1 4.6635 -4.2361 1.9838 19 6 3.5916 -1.1934 -0.0005 20 6 4.3126 -2.4307 -0.0005 21 7 4.8844 -3.4122 -0.0015 22 6 2.1950 -1.1953 -0.0005 23 1 -0.3633 -0.0004 1.0277 24 1 -0.3634 0.8902 -0.5134 25 1 -0.3634 -0.8897 -0.5142 26 1 1.6536 2.1325 0.0004 27 1 4.1132 2.1482 0.0102 28 1 7.0168 -0.0882 2.0808 29 1 5.2007 -2.1504 1.9812 30 1 6.4824 -2.6438 0.8489 31 1 7.6825 -5.0981 4.6761 32 1 1.6551 -2.1307 -0.0014 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872478774.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:31 Heat of formation + Delta-G solvation = 3.050027 kcal Electronic energy + Delta-G solvation = -19752.348070 eV Core-core repulsion = 16613.211280 eV Total energy + Delta-G solvation = -3139.136790 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.81134 -37.31897 -36.45461 -35.54747 -34.58805 -33.31613 -32.23828 -31.56841 -27.60435 -27.41760 -24.26073 -22.49565 -22.11657 -19.59478 -18.65956 -17.77409 -17.12926 -16.34714 -16.03446 -15.64407 -14.87384 -14.51024 -14.42857 -14.37574 -13.83085 -13.67553 -13.33940 -13.04731 -12.75415 -12.52484 -12.34719 -12.31206 -12.20718 -11.81373 -11.74971 -11.61025 -11.48841 -10.87257 -10.77776 -10.43739 -9.86250 -9.43956 -9.36845 -9.07613 -8.93982 -8.54382 -6.20114 -4.22822 0.30751 0.71915 0.87085 2.73598 2.81553 3.23503 3.35822 3.44022 3.46275 3.68247 3.78807 3.98028 4.35410 4.38037 4.49842 4.68843 4.86265 5.06268 5.13955 5.23766 5.26609 5.30105 5.57190 5.64929 5.81168 5.83873 6.08746 6.09684 6.49156 6.71859 6.86554 7.35214 7.61287 7.74519 8.33483 8.79534 9.37768 10.90877 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.018365 B = 0.007515 C = 0.006075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.294092 B = 3724.799469 C = 4607.723919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.038 4.038 3 C -0.122 4.122 4 C -0.016 4.016 5 C -0.644 4.644 6 S 2.682 3.318 7 O -0.967 6.967 8 O -0.951 6.951 9 N -1.092 6.092 10 C 0.205 3.795 11 C -0.532 4.532 12 H 0.083 0.917 13 C 0.076 3.924 14 N -0.890 5.890 15 Si 0.880 3.120 16 H -0.269 1.269 17 H -0.290 1.290 18 H -0.254 1.254 19 C 0.096 3.904 20 C 0.191 3.809 21 N -0.335 5.335 22 C -0.098 4.098 23 H 0.080 0.920 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.138 0.862 27 H 0.153 0.847 28 H 0.418 0.582 29 H 0.017 0.983 30 H 0.045 0.955 31 H 0.267 0.733 32 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.067 10.792 -8.355 21.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.038 4.038 3 C -0.142 4.142 4 C -0.035 4.035 5 C -0.730 4.730 6 S 2.769 3.231 7 O -0.958 6.958 8 O -0.941 6.941 9 N -0.855 5.855 10 C 0.081 3.919 11 C -0.571 4.571 12 H 0.101 0.899 13 C -0.128 4.128 14 N -0.528 5.528 15 Si 0.708 3.292 16 H -0.195 1.195 17 H -0.217 1.217 18 H -0.179 1.179 19 C 0.092 3.908 20 C -0.124 4.124 21 N -0.011 5.011 22 C -0.119 4.119 23 H 0.099 0.901 24 H 0.093 0.907 25 H 0.092 0.908 26 H 0.156 0.844 27 H 0.170 0.830 28 H 0.254 0.746 29 H 0.034 0.966 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -14.729 9.298 -9.044 19.626 hybrid contribution -1.245 -0.319 0.405 1.348 sum -15.974 8.979 -8.640 20.259 Atomic orbital electron populations 1.20929 0.89992 1.03595 1.03269 1.20104 0.96696 0.92653 0.94345 1.21354 0.94103 0.98077 1.00626 1.20926 0.94472 0.96638 0.91431 1.31353 1.28727 0.97646 1.15316 1.02223 0.73575 0.73247 0.74102 1.93545 1.81281 1.33970 1.86962 1.93621 1.79480 1.65232 1.55734 1.55260 1.70896 1.21430 1.37898 1.20218 0.96209 0.76546 0.98927 1.20999 1.23821 0.97884 1.14361 0.89894 1.24861 0.95496 0.97923 0.94516 1.69891 1.39345 1.18218 1.25314 0.86887 0.82343 0.81243 0.78741 1.19453 1.21690 1.17911 1.15373 0.92367 0.85441 0.97621 1.25344 0.95815 0.94101 0.97123 1.81183 1.04846 1.10507 1.04548 1.21169 0.91733 0.98980 1.00052 0.90094 0.90719 0.90797 0.84414 0.82955 0.74608 0.96587 0.93724 0.92301 0.84189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.69 10.01 36.00 0.36 -0.33 16 2 C -0.04 -0.35 5.87 -104.68 -0.61 -0.96 16 3 C -0.12 -1.11 9.69 -39.49 -0.38 -1.49 16 4 C -0.02 -0.18 9.54 -39.64 -0.38 -0.56 16 5 C -0.64 -9.71 5.92 -39.17 -0.23 -9.94 16 6 S 2.68 48.53 5.44 -107.50 -0.58 47.95 16 7 O -0.97 -17.44 16.97 -57.17 -0.97 -18.41 16 8 O -0.95 -20.15 16.24 -57.17 -0.93 -21.08 16 9 N -1.09 -22.02 5.99 -11.65 -0.07 -22.09 16 10 C 0.21 4.95 2.98 -5.19 -0.02 4.94 16 11 C -0.53 -14.97 9.83 -34.44 -0.34 -15.31 16 12 H 0.08 2.44 7.90 -52.48 -0.41 2.03 16 13 C 0.08 2.22 5.47 -17.82 -0.10 2.12 16 14 N -0.89 -27.11 13.96 55.43 0.77 -26.33 16 15 Si 0.88 22.36 25.87 -169.99 -4.40 17.96 16 16 H -0.27 -6.99 7.11 56.52 0.40 -6.59 16 17 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 18 H -0.25 -6.02 4.78 56.52 0.27 -5.75 16 19 C 0.10 1.49 5.66 -106.93 -0.60 0.88 16 20 C 0.19 3.64 9.70 -22.48 -0.22 3.43 16 21 N -0.33 -7.34 12.10 41.83 0.51 -6.83 16 22 C -0.10 -1.14 9.41 -39.17 -0.37 -1.51 16 23 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.07 0.32 8.08 -51.93 -0.42 -0.10 16 25 H 0.07 0.37 8.08 -51.93 -0.42 -0.05 16 26 H 0.14 0.79 8.06 -52.48 -0.42 0.37 16 27 H 0.15 1.52 7.33 -52.48 -0.38 1.14 16 28 H 0.42 7.73 8.54 -34.47 -0.29 7.44 16 29 H 0.02 0.39 5.31 -51.93 -0.28 0.11 16 30 H 0.05 1.15 4.81 -51.93 -0.25 0.90 16 31 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 32 H 0.14 1.33 8.06 -52.49 -0.42 0.90 16 LS Contribution 282.23 15.07 4.25 4.25 Total: -1.00 -35.19 282.23 -7.30 -42.49 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: -2.99 Total: 0.83 kcal Atomic # 6 Polarization: -15.84 SS G_CDS: -2.89 Total: -18.73 kcal Atomic # 7 Polarization: -56.46 SS G_CDS: 1.21 Total: -55.25 kcal Atomic # 8 Polarization: -37.59 SS G_CDS: -1.90 Total: -39.49 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.40 Total: 17.96 kcal Atomic # 16 Polarization: 48.53 SS G_CDS: -0.58 Total: 47.95 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -35.19 -7.30 -42.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872478774.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.537 kcal (2) G-P(sol) polarization free energy of solvation -35.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds