Wall clock time and date at job start Tue Mar 31 2020 01:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38387 * 119.92539 * 2 1 4 4 C 1.38339 * 120.30791 * 179.72378 * 3 2 1 5 5 C 1.37965 * 120.14990 * 0.55779 * 4 3 2 6 6 S 1.76198 * 120.07918 * 179.74959 * 5 4 3 7 7 O 1.42106 * 106.40024 * 1.17570 * 6 5 4 8 8 O 1.42105 * 106.40118 * 228.26188 * 6 5 4 9 9 N 1.65596 * 107.22309 * 114.71779 * 6 5 4 10 10 C 1.46506 * 119.99677 * 65.00118 * 9 6 5 11 11 C 1.50699 * 109.46928 * 165.00101 * 10 9 6 12 12 H 1.08003 * 119.99963 * 0.02562 * 11 10 9 13 13 C 1.37873 * 119.99865 * 179.97438 * 11 10 9 14 14 N 1.31522 * 119.99749 * 179.97438 * 13 11 10 15 15 Si 1.86805 * 120.00236 * 0.02562 * 13 11 10 16 16 H 1.48496 * 109.47160 * 89.99730 * 15 13 11 17 17 H 1.48503 * 109.47061 * 209.99752 * 15 13 11 18 18 H 1.48500 * 109.46598 * 329.99398 * 15 13 11 19 19 C 1.39614 * 119.84708 * 359.46514 * 5 4 3 20 20 C 1.43201 * 120.15287 * 180.27696 * 19 5 4 21 21 N 4.80105 * 134.70674 * 180.02562 * 2 1 3 22 22 C 1.37923 * 119.92534 * 180.02562 * 2 1 3 23 23 H 1.09001 * 109.46887 * 269.97578 * 1 2 3 24 24 H 1.08998 * 109.47401 * 29.97251 * 1 2 3 25 25 H 1.08997 * 109.47458 * 149.97761 * 1 2 3 26 26 H 1.08003 * 119.84512 * 0.02700 * 3 2 1 27 27 H 1.08003 * 119.92779 * 180.27650 * 4 3 2 28 28 H 0.96996 * 120.00260 * 244.99697 * 9 6 5 29 29 H 1.09004 * 109.47073 * 284.99929 * 10 9 6 30 30 H 1.09000 * 109.47212 * 45.00012 * 10 9 6 31 31 H 0.97001 * 119.99269 * 180.02562 * 14 13 11 32 32 H 1.07999 * 120.07678 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1994 0.0000 4 6 3.5807 1.2086 0.0058 5 6 4.2816 0.0203 -0.0001 6 16 6.0435 0.0343 0.0006 7 8 6.4339 1.4002 0.0357 8 8 6.4523 -0.8648 -1.0211 9 7 6.5386 -0.6305 1.4342 10 6 6.2544 -2.0379 1.7258 11 6 7.1035 -2.4921 2.8849 12 1 7.7863 -1.8014 3.3575 13 6 7.0080 -3.7890 3.3429 14 7 7.7495 -4.1855 4.3542 15 14 5.8266 -4.9834 2.5261 16 1 6.5218 -5.6884 1.4194 17 1 5.3552 -5.9751 3.5260 18 1 4.6635 -4.2361 1.9838 19 6 3.5916 -1.1934 -0.0005 20 6 4.3126 -2.4307 -0.0005 21 7 4.8844 -3.4122 -0.0015 22 6 2.1950 -1.1953 -0.0005 23 1 -0.3633 -0.0004 1.0277 24 1 -0.3634 0.8902 -0.5134 25 1 -0.3634 -0.8897 -0.5142 26 1 1.6536 2.1325 0.0004 27 1 4.1132 2.1482 0.0102 28 1 7.0168 -0.0882 2.0808 29 1 5.2007 -2.1504 1.9812 30 1 6.4824 -2.6438 0.8489 31 1 7.6825 -5.0981 4.6761 32 1 1.6551 -2.1307 -0.0014 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000872478774.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:01:30 Heat of formation + Delta-G solvation = -24.891159 kcal Electronic energy + Delta-G solvation = -19753.559690 eV Core-core repulsion = 16613.211280 eV Total energy + Delta-G solvation = -3140.348411 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.76449 -38.78065 -37.93859 -37.06243 -36.37549 -34.36203 -34.14470 -32.53043 -29.44457 -28.29049 -25.26709 -24.18959 -23.34169 -20.95562 -20.08744 -19.35416 -18.33784 -18.04476 -17.55820 -16.96767 -16.32693 -15.78454 -15.71535 -15.51385 -15.38806 -14.92537 -14.74945 -14.42311 -14.28109 -14.01838 -13.52667 -13.38477 -13.26016 -13.21446 -13.05316 -13.01922 -12.86304 -12.48345 -12.33416 -11.95451 -11.74458 -11.51665 -11.00836 -10.44628 -10.19627 -10.07691 -8.45129 -6.51468 -0.81240 -0.59388 -0.02861 1.19783 1.30534 1.34675 1.44652 1.78841 1.92321 2.22766 2.41402 2.58761 2.68475 2.89758 3.22211 3.74358 3.81209 4.13141 4.15254 4.26178 4.36425 4.62709 4.80949 4.83069 4.92314 4.92516 4.93959 4.98610 5.29178 5.30199 5.37815 5.72736 6.07382 6.11449 6.21798 6.54509 7.12665 8.69076 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.018365 B = 0.007515 C = 0.006075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.294092 B = 3724.799469 C = 4607.723919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.024 4.024 3 C -0.103 4.103 4 C -0.017 4.017 5 C -0.653 4.653 6 S 2.691 3.309 7 O -0.970 6.970 8 O -0.990 6.990 9 N -1.101 6.101 10 C 0.218 3.782 11 C -0.539 4.539 12 H 0.057 0.943 13 C 0.026 3.974 14 N -0.932 5.932 15 Si 0.932 3.068 16 H -0.281 1.281 17 H -0.281 1.281 18 H -0.231 1.231 19 C 0.057 3.943 20 C 0.213 3.787 21 N -0.402 5.402 22 C -0.091 4.091 23 H 0.094 0.906 24 H 0.098 0.902 25 H 0.083 0.917 26 H 0.185 0.815 27 H 0.169 0.831 28 H 0.422 0.578 29 H 0.029 0.971 30 H 0.033 0.967 31 H 0.271 0.729 32 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.325 12.825 -9.220 25.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.024 4.024 3 C -0.122 4.122 4 C -0.037 4.037 5 C -0.745 4.745 6 S 2.783 3.217 7 O -0.960 6.960 8 O -0.980 6.980 9 N -0.862 5.862 10 C 0.093 3.907 11 C -0.579 4.579 12 H 0.075 0.925 13 C -0.175 4.175 14 N -0.571 5.571 15 Si 0.757 3.243 16 H -0.207 1.207 17 H -0.207 1.207 18 H -0.155 1.155 19 C 0.052 3.948 20 C -0.101 4.101 21 N -0.079 5.079 22 C -0.112 4.112 23 H 0.113 0.887 24 H 0.117 0.883 25 H 0.101 0.899 26 H 0.202 0.798 27 H 0.186 0.814 28 H 0.258 0.742 29 H 0.047 0.953 30 H 0.050 0.950 31 H 0.080 0.920 32 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -18.931 11.350 -9.904 24.193 hybrid contribution -0.068 -0.725 0.616 0.954 sum -18.999 10.625 -9.288 23.667 Atomic orbital electron populations 1.21073 0.86778 1.05355 1.04554 1.20618 0.98780 0.91578 0.91446 1.21906 0.92872 1.00058 0.97330 1.21279 0.95978 0.95753 0.90657 1.30638 1.25662 0.99221 1.18980 1.01557 0.74908 0.72509 0.72683 1.93532 1.82418 1.33434 1.86650 1.93572 1.81460 1.66259 1.56729 1.55199 1.72260 1.20171 1.38587 1.19867 0.95857 0.78377 0.96615 1.21327 1.23687 0.97630 1.15214 0.92505 1.25624 0.97105 0.99688 0.95039 1.69996 1.41202 1.18931 1.26944 0.86054 0.81340 0.79412 0.77461 1.20729 1.20685 1.15490 1.15585 0.93900 0.83787 1.01494 1.26113 0.94606 0.94348 0.95039 1.81162 1.06582 1.12675 1.07443 1.21518 0.89991 1.01210 0.98480 0.88743 0.88343 0.89857 0.79797 0.81381 0.74193 0.95338 0.94964 0.91996 0.82233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.60 10.01 71.23 0.71 0.11 16 2 C -0.02 -0.31 5.87 -19.90 -0.12 -0.42 16 3 C -0.10 -1.26 9.69 22.33 0.22 -1.04 16 4 C -0.02 -0.34 9.54 22.23 0.21 -0.13 16 5 C -0.65 -18.52 5.92 22.54 0.13 -18.39 16 6 S 2.69 97.71 5.44 -56.49 -0.31 97.40 16 7 O -0.97 -34.44 16.97 -128.00 -2.17 -36.61 16 8 O -0.99 -43.15 16.24 -128.00 -2.08 -45.23 16 9 N -1.10 -45.45 5.99 -190.77 -1.14 -46.60 16 10 C 0.22 10.77 2.98 85.63 0.26 11.03 16 11 C -0.54 -31.44 9.83 25.60 0.25 -31.19 16 12 H 0.06 3.51 7.90 -2.91 -0.02 3.49 16 13 C 0.03 1.54 5.47 84.65 0.46 2.00 16 14 N -0.93 -58.45 13.96 21.45 0.30 -58.15 16 15 Si 0.93 47.12 25.87 68.60 1.77 48.89 16 16 H -0.28 -14.69 7.11 99.48 0.71 -13.98 16 17 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 18 H -0.23 -10.73 4.78 99.48 0.48 -10.25 16 19 C 0.06 1.65 5.66 -21.36 -0.12 1.53 16 20 C 0.21 8.07 9.70 88.33 0.86 8.93 16 21 N -0.40 -17.80 12.10 19.00 0.23 -17.57 16 22 C -0.09 -1.77 9.41 22.54 0.21 -1.55 16 23 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 24 H 0.10 0.12 8.08 -2.39 -0.02 0.10 16 25 H 0.08 0.34 8.08 -2.39 -0.02 0.32 16 26 H 0.18 0.65 8.06 -2.91 -0.02 0.63 16 27 H 0.17 2.72 7.33 -2.91 -0.02 2.70 16 28 H 0.42 16.18 8.54 -96.75 -0.83 15.35 16 29 H 0.03 1.36 5.31 -2.38 -0.01 1.34 16 30 H 0.03 1.72 4.81 -2.39 -0.01 1.71 16 31 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 32 H 0.16 2.41 8.06 -2.91 -0.02 2.38 16 Total: -1.00 -80.44 282.23 -0.20 -80.64 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: 0.12 Total: 6.35 kcal Atomic # 6 Polarization: -32.20 SS G_CDS: 3.08 Total: -29.12 kcal Atomic # 7 Polarization: -121.70 SS G_CDS: -0.61 Total: -122.32 kcal Atomic # 8 Polarization: -77.59 SS G_CDS: -4.25 Total: -81.84 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 1.77 Total: 48.89 kcal Atomic # 16 Polarization: 97.71 SS G_CDS: -0.31 Total: 97.40 kcal Total: -80.44 -0.20 -80.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872478774.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.753 kcal (2) G-P(sol) polarization free energy of solvation -80.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds