Wall clock time and date at job start Tue Mar 31 2020 01:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38382 * 119.92249 * 2 1 4 4 C 1.38344 * 120.30436 * 180.29909 * 3 2 1 5 5 C 1.37972 * 120.14849 * 359.44994 * 4 3 2 6 6 C 1.39616 * 119.84645 * 0.27091 * 5 4 3 7 7 C 1.43191 * 120.14900 * 179.97438 * 6 5 4 8 8 N 4.80110 * 134.70605 * 179.76947 * 2 1 3 9 9 C 1.37924 * 119.92566 * 179.74620 * 2 1 3 10 10 S 1.76208 * 120.07328 * 359.95692 * 9 2 1 11 11 O 1.42097 * 106.39854 * 196.75794 * 10 9 2 12 12 O 1.42098 * 106.40425 * 329.68055 * 10 9 2 13 13 N 1.65599 * 107.21556 * 83.22064 * 10 9 2 14 14 C 1.46500 * 120.00129 * 65.00301 * 13 10 9 15 15 C 1.50700 * 109.47250 * 164.99920 * 14 13 10 16 16 H 1.08000 * 119.99970 * 359.97438 * 15 14 13 17 17 C 1.37877 * 119.99897 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00108 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 120.00228 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.46688 * 90.00294 * 19 17 15 21 21 H 1.48495 * 109.47189 * 210.00000 * 19 17 15 22 22 H 1.48498 * 109.47176 * 330.00455 * 19 17 15 23 23 H 1.08999 * 109.46973 * 264.29615 * 1 2 3 24 24 H 1.09000 * 109.47320 * 24.29546 * 1 2 3 25 25 H 1.08995 * 109.47092 * 144.29380 * 1 2 3 26 26 H 1.07998 * 119.84984 * 0.02562 * 3 2 1 27 27 H 1.08003 * 119.92774 * 179.72028 * 4 3 2 28 28 H 1.08000 * 120.07843 * 180.25572 * 5 4 3 29 29 H 0.96997 * 120.00099 * 244.99355 * 13 10 9 30 30 H 1.09004 * 109.46756 * 284.99320 * 14 13 10 31 31 H 1.08996 * 109.47429 * 44.99115 * 14 13 10 32 32 H 0.97002 * 120.00333 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1973 1.1994 0.0000 4 6 3.5807 1.2086 -0.0062 5 6 4.2817 0.0202 -0.0010 6 6 3.5916 -1.1935 0.0048 7 6 4.3125 -2.4307 0.0096 8 7 4.8845 -3.4122 0.0137 9 6 2.1951 -1.1953 0.0053 10 16 1.3141 -2.7213 0.0132 11 8 2.2441 -3.7195 0.4104 12 8 0.0948 -2.4772 0.7010 13 7 0.9063 -3.0599 -1.5557 14 6 1.9544 -3.3292 -2.5432 15 6 1.3412 -3.9583 -3.7677 16 1 0.2773 -4.1398 -3.8063 17 6 2.1385 -4.3021 -4.8387 18 7 1.6036 -4.8515 -5.9071 19 14 3.9787 -3.9876 -4.7723 20 1 4.6633 -5.1747 -4.2001 21 1 4.4877 -3.7361 -6.1444 22 1 4.2478 -2.8021 -3.9194 23 1 -0.3633 -0.1021 1.0226 24 1 -0.3634 0.9366 -0.4228 25 1 -0.3633 -0.8344 -0.5997 26 1 1.6536 2.1325 0.0004 27 1 4.1133 2.1482 -0.0108 28 1 5.3616 0.0287 -0.0018 29 1 -0.0266 -3.0801 -1.8208 30 1 2.4413 -2.3942 -2.8203 31 1 2.6907 -4.0094 -2.1152 32 1 2.1644 -5.0931 -6.6608 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872480139.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:38 Heat of formation + Delta-G solvation = -11.900846 kcal Electronic energy + Delta-G solvation = -19857.817494 eV Core-core repulsion = 16718.032386 eV Total energy + Delta-G solvation = -3139.785109 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.77108 -37.33120 -36.04888 -35.54862 -34.87631 -33.11727 -32.25983 -31.69144 -27.47877 -27.21714 -24.36606 -22.57124 -22.09446 -19.38698 -18.57224 -17.79445 -17.12913 -16.40244 -16.20961 -15.41257 -15.26957 -14.46419 -14.30119 -13.94373 -13.55171 -13.35186 -13.16255 -13.05064 -12.76317 -12.66743 -12.47155 -12.44476 -12.06544 -11.96135 -11.75814 -11.66601 -11.26351 -10.93667 -10.71456 -10.54182 -10.03266 -9.58074 -9.56223 -8.99241 -8.96719 -8.58617 -6.23373 -4.25030 0.29806 0.71472 0.85549 2.84886 2.88275 3.21737 3.27455 3.31962 3.40200 3.66296 3.77951 4.04892 4.28487 4.30872 4.61184 4.62838 4.94174 5.09153 5.13295 5.14514 5.41063 5.50116 5.60632 5.82003 5.94136 6.02899 6.07677 6.12872 6.49565 6.76115 6.84537 7.32510 7.66920 7.73036 8.31665 8.77627 9.34831 10.88783 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.017260 B = 0.007519 C = 0.006829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.818817 B = 3722.977253 C = 4099.246968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.025 3.975 3 C -0.122 4.122 4 C -0.065 4.065 5 C -0.104 4.104 6 C 0.088 3.912 7 C 0.215 3.785 8 N -0.350 5.350 9 C -0.644 4.644 10 S 2.680 3.320 11 O -0.952 6.952 12 O -0.963 6.963 13 N -1.091 6.091 14 C 0.218 3.782 15 C -0.531 4.531 16 H 0.085 0.915 17 C 0.078 3.922 18 N -0.890 5.890 19 Si 0.866 3.134 20 H -0.269 1.269 21 H -0.280 1.280 22 H -0.264 1.264 23 H 0.098 0.902 24 H 0.078 0.922 25 H 0.080 0.920 26 H 0.138 0.862 27 H 0.140 0.860 28 H 0.140 0.860 29 H 0.417 0.583 30 H 0.019 0.981 31 H 0.030 0.970 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.376 15.732 11.516 19.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.023 3.977 3 C -0.141 4.141 4 C -0.083 4.083 5 C -0.125 4.125 6 C 0.084 3.916 7 C -0.102 4.102 8 N -0.025 5.025 9 C -0.731 4.731 10 S 2.767 3.233 11 O -0.941 6.941 12 O -0.953 6.953 13 N -0.854 5.854 14 C 0.093 3.907 15 C -0.570 4.570 16 H 0.103 0.897 17 C -0.126 4.126 18 N -0.527 5.527 19 Si 0.693 3.307 20 H -0.195 1.195 21 H -0.206 1.206 22 H -0.189 1.189 23 H 0.117 0.883 24 H 0.097 0.903 25 H 0.099 0.901 26 H 0.156 0.844 27 H 0.157 0.843 28 H 0.158 0.842 29 H 0.253 0.747 30 H 0.037 0.963 31 H 0.047 0.953 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.325 13.637 12.115 18.389 hybrid contribution 0.767 1.119 -0.642 1.501 sum 3.092 14.757 11.473 18.946 Atomic orbital electron populations 1.21275 0.89084 1.04015 1.05038 1.19588 0.96603 0.91176 0.90308 1.21393 0.94442 0.97878 1.00403 1.21340 0.94317 0.98021 0.94619 1.21276 1.00618 0.90702 0.99885 1.15402 0.89954 0.88062 0.98229 1.25349 0.95352 0.92981 0.96505 1.81124 1.08795 1.08082 1.04540 1.31224 1.03964 1.21755 1.16109 1.02302 0.73644 0.73823 0.73559 1.93623 1.64405 1.54807 1.81292 1.93577 1.43522 1.86004 1.72236 1.55228 1.17000 1.85500 1.27672 1.19471 0.86582 0.95957 0.88649 1.20997 0.96907 1.41406 0.97682 0.89736 1.24810 0.98549 0.94176 0.95041 1.69863 1.36071 1.41107 1.05657 0.86987 0.85925 0.79920 0.77913 1.19459 1.20580 1.18860 0.88323 0.90323 0.90109 0.84383 0.84250 0.84181 0.74709 0.96350 0.95256 0.92205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 8.36 36.01 0.30 -1.20 16 2 C 0.02 0.30 5.87 -104.68 -0.61 -0.31 16 3 C -0.12 -1.12 9.67 -39.49 -0.38 -1.50 16 4 C -0.06 -0.55 10.03 -39.64 -0.40 -0.95 16 5 C -0.10 -1.13 9.76 -39.16 -0.38 -1.51 16 6 C 0.09 1.32 5.73 -106.93 -0.61 0.71 16 7 C 0.21 3.92 12.48 -22.48 -0.28 3.64 16 8 N -0.35 -7.24 18.00 41.84 0.75 -6.49 16 9 C -0.64 -9.76 5.97 -39.17 -0.23 -10.00 16 10 S 2.68 47.98 4.98 -107.50 -0.54 47.44 16 11 O -0.95 -20.20 14.12 -57.17 -0.81 -21.00 16 12 O -0.96 -16.80 14.79 -57.17 -0.85 -17.65 16 13 N -1.09 -21.17 5.96 -11.66 -0.07 -21.24 16 14 C 0.22 5.11 5.04 -5.19 -0.03 5.09 16 15 C -0.53 -14.48 9.83 -34.44 -0.34 -14.82 16 16 H 0.08 2.41 7.90 -52.49 -0.41 1.99 16 17 C 0.08 2.21 5.47 -17.82 -0.10 2.12 16 18 N -0.89 -26.39 13.96 55.43 0.77 -25.62 16 19 Si 0.87 21.29 27.47 -169.99 -4.67 16.62 16 20 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.26 -6.16 6.54 56.52 0.37 -5.79 16 23 H 0.10 1.03 7.82 -51.93 -0.41 0.63 16 24 H 0.08 0.62 8.05 -51.93 -0.42 0.20 16 25 H 0.08 0.98 6.28 -51.93 -0.33 0.66 16 26 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 27 H 0.14 0.68 8.06 -52.48 -0.42 0.26 16 28 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 29 H 0.42 7.33 8.54 -34.47 -0.29 7.04 16 30 H 0.02 0.42 7.20 -51.93 -0.37 0.05 16 31 H 0.03 0.74 7.18 -51.93 -0.37 0.36 16 32 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 293.68 15.07 4.43 4.43 Total: -1.00 -34.12 293.68 -7.08 -41.20 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: -3.04 Total: 1.05 kcal Atomic # 6 Polarization: -15.67 SS G_CDS: -3.06 Total: -18.73 kcal Atomic # 7 Polarization: -54.80 SS G_CDS: 1.46 Total: -53.34 kcal Atomic # 8 Polarization: -37.00 SS G_CDS: -1.65 Total: -38.65 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.67 Total: 16.62 kcal Atomic # 16 Polarization: 47.98 SS G_CDS: -0.54 Total: 47.44 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -34.12 -7.08 -41.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872480139.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.296 kcal (2) G-P(sol) polarization free energy of solvation -34.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds