Wall clock time and date at job start Tue Mar 31 2020 01:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38382 * 119.92249 * 2 1 4 4 C 1.38344 * 120.30436 * 180.29909 * 3 2 1 5 5 C 1.37972 * 120.14849 * 359.44994 * 4 3 2 6 6 C 1.39616 * 119.84645 * 0.27091 * 5 4 3 7 7 C 1.43191 * 120.14900 * 179.97438 * 6 5 4 8 8 N 4.80110 * 134.70605 * 179.76947 * 2 1 3 9 9 C 1.37924 * 119.92566 * 179.74620 * 2 1 3 10 10 S 1.76208 * 120.07328 * 359.95692 * 9 2 1 11 11 O 1.42097 * 106.39854 * 196.75794 * 10 9 2 12 12 O 1.42098 * 106.40425 * 329.68055 * 10 9 2 13 13 N 1.65599 * 107.21556 * 83.22064 * 10 9 2 14 14 C 1.46500 * 120.00129 * 65.00301 * 13 10 9 15 15 C 1.50700 * 109.47250 * 164.99920 * 14 13 10 16 16 H 1.08000 * 119.99970 * 359.97438 * 15 14 13 17 17 C 1.37877 * 119.99897 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00108 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 120.00228 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.46688 * 90.00294 * 19 17 15 21 21 H 1.48495 * 109.47189 * 210.00000 * 19 17 15 22 22 H 1.48498 * 109.47176 * 330.00455 * 19 17 15 23 23 H 1.08999 * 109.46973 * 264.29615 * 1 2 3 24 24 H 1.09000 * 109.47320 * 24.29546 * 1 2 3 25 25 H 1.08995 * 109.47092 * 144.29380 * 1 2 3 26 26 H 1.07998 * 119.84984 * 0.02562 * 3 2 1 27 27 H 1.08003 * 119.92774 * 179.72028 * 4 3 2 28 28 H 1.08000 * 120.07843 * 180.25572 * 5 4 3 29 29 H 0.96997 * 120.00099 * 244.99355 * 13 10 9 30 30 H 1.09004 * 109.46756 * 284.99320 * 14 13 10 31 31 H 1.08996 * 109.47429 * 44.99115 * 14 13 10 32 32 H 0.97002 * 120.00333 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1973 1.1994 0.0000 4 6 3.5807 1.2086 -0.0062 5 6 4.2817 0.0202 -0.0010 6 6 3.5916 -1.1935 0.0048 7 6 4.3125 -2.4307 0.0096 8 7 4.8845 -3.4122 0.0137 9 6 2.1951 -1.1953 0.0053 10 16 1.3141 -2.7213 0.0132 11 8 2.2441 -3.7195 0.4104 12 8 0.0948 -2.4772 0.7010 13 7 0.9063 -3.0599 -1.5557 14 6 1.9544 -3.3292 -2.5432 15 6 1.3412 -3.9583 -3.7677 16 1 0.2773 -4.1398 -3.8063 17 6 2.1385 -4.3021 -4.8387 18 7 1.6036 -4.8515 -5.9071 19 14 3.9787 -3.9876 -4.7723 20 1 4.6633 -5.1747 -4.2001 21 1 4.4877 -3.7361 -6.1444 22 1 4.2478 -2.8021 -3.9194 23 1 -0.3633 -0.1021 1.0226 24 1 -0.3634 0.9366 -0.4228 25 1 -0.3633 -0.8344 -0.5997 26 1 1.6536 2.1325 0.0004 27 1 4.1133 2.1482 -0.0108 28 1 5.3616 0.0287 -0.0018 29 1 -0.0266 -3.0801 -1.8208 30 1 2.4413 -2.3942 -2.8203 31 1 2.6907 -4.0094 -2.1152 32 1 2.1644 -5.0931 -6.6608 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000872480139.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:03:37 Heat of formation + Delta-G solvation = -37.852010 kcal Electronic energy + Delta-G solvation = -19858.942821 eV Core-core repulsion = 16718.032386 eV Total energy + Delta-G solvation = -3140.910435 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.67477 -38.74707 -37.41078 -37.03405 -36.66014 -34.34458 -33.98276 -32.62331 -29.43528 -28.07979 -25.34849 -24.12288 -23.43824 -20.78628 -19.79492 -19.35734 -18.37369 -17.97710 -17.61945 -16.88821 -16.16519 -16.07044 -15.45613 -15.32108 -14.99878 -14.84305 -14.57038 -14.44171 -14.17822 -14.05724 -13.86447 -13.54976 -13.42313 -13.27423 -12.92959 -12.88240 -12.58680 -12.50538 -12.46621 -11.95560 -11.71389 -11.66522 -10.98598 -10.48193 -10.38244 -9.86544 -8.41408 -6.47136 -0.79907 -0.54296 0.00065 1.25183 1.30976 1.36632 1.56253 1.83633 1.96721 2.22953 2.46831 2.66529 2.77329 2.93207 3.18901 3.67944 3.93764 4.09936 4.24057 4.29628 4.34522 4.56509 4.76457 4.83042 4.89244 4.92235 5.00916 5.20372 5.27221 5.30858 5.32644 5.75124 6.11889 6.16528 6.36457 6.58983 7.16214 8.74053 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.017260 B = 0.007519 C = 0.006829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.818817 B = 3722.977253 C = 4099.246968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.017 3.983 3 C -0.105 4.105 4 C -0.045 4.045 5 C -0.092 4.092 6 C 0.047 3.953 7 C 0.233 3.767 8 N -0.415 5.415 9 C -0.658 4.658 10 S 2.685 3.315 11 O -0.994 6.994 12 O -0.966 6.966 13 N -1.097 6.097 14 C 0.231 3.769 15 C -0.538 4.538 16 H 0.059 0.941 17 C 0.027 3.973 18 N -0.931 5.931 19 Si 0.918 3.082 20 H -0.278 1.278 21 H -0.265 1.265 22 H -0.243 1.243 23 H 0.099 0.901 24 H 0.115 0.885 25 H 0.059 0.941 26 H 0.184 0.816 27 H 0.192 0.808 28 H 0.166 0.834 29 H 0.422 0.578 30 H 0.034 0.966 31 H 0.012 0.988 32 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.406 20.310 12.221 23.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.016 3.984 3 C -0.124 4.124 4 C -0.063 4.063 5 C -0.113 4.113 6 C 0.043 3.957 7 C -0.083 4.083 8 N -0.091 5.091 9 C -0.750 4.750 10 S 2.778 3.222 11 O -0.983 6.983 12 O -0.956 6.956 13 N -0.858 5.858 14 C 0.105 3.895 15 C -0.577 4.577 16 H 0.077 0.923 17 C -0.174 4.174 18 N -0.570 5.570 19 Si 0.741 3.259 20 H -0.204 1.204 21 H -0.189 1.189 22 H -0.166 1.166 23 H 0.118 0.882 24 H 0.134 0.866 25 H 0.078 0.922 26 H 0.201 0.799 27 H 0.209 0.791 28 H 0.183 0.817 29 H 0.258 0.742 30 H 0.052 0.948 31 H 0.029 0.971 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.307 18.171 12.826 22.486 hybrid contribution 0.337 -0.120 -0.778 0.857 sum 3.644 18.051 12.047 22.006 Atomic orbital electron populations 1.21399 0.88596 1.05195 1.05062 1.19901 0.97197 0.91275 0.90071 1.21968 0.95078 0.98095 0.97211 1.21983 0.94204 0.98894 0.91195 1.21725 1.02106 0.89790 0.97659 1.15659 0.89862 0.88133 1.02085 1.26071 0.94319 0.93238 0.94663 1.81105 1.10973 1.09697 1.07326 1.30527 1.03918 1.20543 1.20002 1.01734 0.73391 0.74493 0.72590 1.93575 1.65248 1.57864 1.81653 1.93568 1.43922 1.86367 1.71716 1.55117 1.16567 1.86528 1.27564 1.19110 0.86917 0.95738 0.87709 1.21289 0.96047 1.41180 0.99206 0.92322 1.25595 1.02948 0.94083 0.94758 1.69975 1.37863 1.42605 1.06580 0.86146 0.80575 0.80224 0.78908 1.20405 1.18942 1.16635 0.88234 0.86642 0.92181 0.79889 0.79096 0.81654 0.74204 0.94795 0.97056 0.91869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 8.36 71.24 0.60 -2.16 16 2 C 0.02 0.36 5.87 -19.90 -0.12 0.24 16 3 C -0.10 -1.25 9.67 22.33 0.22 -1.03 16 4 C -0.05 -0.46 10.03 22.23 0.22 -0.23 16 5 C -0.09 -1.58 9.76 22.54 0.22 -1.36 16 6 C 0.05 1.33 5.73 -21.36 -0.12 1.21 16 7 C 0.23 8.54 12.48 88.33 1.10 9.65 16 8 N -0.42 -17.70 18.00 19.00 0.34 -17.36 16 9 C -0.66 -18.94 5.97 22.54 0.13 -18.81 16 10 S 2.68 98.04 4.98 -56.49 -0.28 97.76 16 11 O -0.99 -44.10 14.12 -128.00 -1.81 -45.91 16 12 O -0.97 -34.11 14.79 -128.00 -1.89 -36.00 16 13 N -1.10 -43.74 5.96 -190.79 -1.14 -44.88 16 14 C 0.23 11.02 5.04 85.63 0.43 11.45 16 15 C -0.54 -30.20 9.83 25.60 0.25 -29.94 16 16 H 0.06 3.50 7.90 -2.91 -0.02 3.48 16 17 C 0.03 1.52 5.47 84.65 0.46 1.99 16 18 N -0.93 -56.51 13.96 21.45 0.30 -56.21 16 19 Si 0.92 43.89 27.47 68.60 1.88 45.78 16 20 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 21 H -0.26 -11.91 7.11 99.48 0.71 -11.21 16 22 H -0.24 -10.68 6.54 99.48 0.65 -10.03 16 23 H 0.10 1.85 7.82 -2.39 -0.02 1.83 16 24 H 0.12 1.28 8.05 -2.39 -0.02 1.26 16 25 H 0.06 1.39 6.28 -2.39 -0.02 1.38 16 26 H 0.18 0.62 8.06 -2.91 -0.02 0.60 16 27 H 0.19 0.11 8.06 -2.91 -0.02 0.09 16 28 H 0.17 1.96 8.06 -2.91 -0.02 1.94 16 29 H 0.42 15.49 8.54 -96.75 -0.83 14.67 16 30 H 0.03 1.52 7.20 -2.38 -0.02 1.51 16 31 H 0.01 0.59 7.18 -2.39 -0.02 0.58 16 32 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -79.17 293.68 1.09 -78.08 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: 0.29 Total: 7.74 kcal Atomic # 6 Polarization: -32.40 SS G_CDS: 3.40 Total: -29.00 kcal Atomic # 7 Polarization: -117.95 SS G_CDS: -0.50 Total: -118.44 kcal Atomic # 8 Polarization: -78.21 SS G_CDS: -3.70 Total: -81.91 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 1.88 Total: 45.78 kcal Atomic # 16 Polarization: 98.04 SS G_CDS: -0.28 Total: 97.76 kcal Total: -79.17 1.09 -78.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872480139.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.226 kcal (2) G-P(sol) polarization free energy of solvation -79.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds