Wall clock time and date at job start Tue Mar 31 2020 02:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.47082 * 2 1 4 4 C 1.50705 * 109.47015 * 240.00404 * 2 1 3 5 5 H 1.08003 * 120.00076 * 240.00039 * 4 2 1 6 6 C 1.37881 * 120.00221 * 60.00067 * 4 2 1 7 7 N 1.31513 * 119.99709 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00267 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47263 * 89.99863 * 8 6 4 10 10 H 1.48497 * 109.47279 * 210.00094 * 8 6 4 11 11 H 1.48506 * 109.47029 * 329.99849 * 8 6 4 12 12 C 1.50694 * 109.47185 * 120.00562 * 2 1 3 13 13 O 1.21296 * 120.00496 * 119.99673 * 12 2 1 14 14 N 1.34779 * 120.00035 * 300.00173 * 12 2 1 15 15 C 1.40165 * 120.00461 * 175.51881 * 14 12 2 16 16 C 1.38391 * 119.96647 * 34.67814 * 15 14 12 17 17 C 1.39682 * 119.82183 * 179.97438 * 16 15 14 18 18 C 1.43204 * 120.11888 * 179.97438 * 17 16 15 19 19 N 7.43775 * 126.19335 * 126.96415 * 2 1 3 20 20 C 1.39933 * 119.76861 * 359.97438 * 17 16 15 21 21 F 1.35097 * 120.03376 * 180.02562 * 20 17 16 22 22 C 1.38193 * 119.93840 * 0.02562 * 20 17 16 23 23 C 1.38412 * 120.17781 * 359.74274 * 22 20 17 24 24 F 1.35097 * 119.88593 * 180.27541 * 23 22 20 25 25 H 1.09000 * 109.46700 * 59.99573 * 1 2 3 26 26 H 1.08997 * 109.47046 * 300.00148 * 1 2 3 27 27 H 1.08994 * 109.47020 * 179.97438 * 1 2 3 28 28 H 0.96998 * 119.99809 * 180.02562 * 7 6 4 29 29 H 0.96999 * 119.99614 * 355.51131 * 14 12 2 30 30 H 1.07997 * 120.09069 * 359.95491 * 16 15 14 31 31 H 1.08004 * 119.91124 * 180.02562 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5885 -1.1316 6 6 1.6993 -0.2392 -2.4828 7 7 0.9436 0.8304 -2.6034 8 14 2.3213 -1.1201 -4.0081 9 1 1.3427 -2.1614 -4.4121 10 1 2.4866 -0.1411 -5.1123 11 1 3.6293 -1.7581 -3.7124 12 6 2.0324 -0.7105 1.2303 13 8 2.7297 -1.6967 1.1190 14 7 1.7067 -0.2502 2.4545 15 6 2.0945 -0.9630 3.5974 16 6 3.3016 -1.6397 3.6135 17 6 3.6853 -2.3487 4.7542 18 6 4.9327 -3.0517 4.7776 19 7 5.9221 -3.6094 4.7961 20 6 2.8465 -2.3695 5.8741 21 9 3.2126 -3.0531 6.9804 22 6 1.6434 -1.6903 5.8474 23 6 1.2677 -0.9846 4.7175 24 9 0.0927 -0.3181 4.6999 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 0.7090 1.1616 -3.4844 29 1 1.2041 0.5745 2.5446 30 1 3.9450 -1.6201 2.7463 31 1 0.9965 -1.7063 6.7122 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000876346857.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:20:33 Heat of formation + Delta-G solvation = -71.010446 kcal Electronic energy + Delta-G solvation = -20776.531529 eV Core-core repulsion = 17080.342849 eV Total energy + Delta-G solvation = -3696.188680 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.076 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.31485 -49.25111 -40.29227 -38.45395 -36.54041 -34.45318 -33.98400 -31.48142 -30.91494 -29.07271 -25.28971 -24.41754 -23.93179 -22.42356 -19.94031 -19.42881 -18.39800 -17.80031 -16.92191 -16.42021 -16.21772 -15.83133 -15.59858 -15.06258 -14.84931 -14.70205 -14.42027 -14.15782 -13.82889 -13.49634 -13.28339 -12.81909 -12.71154 -12.56445 -12.15346 -12.01510 -11.67389 -11.14017 -10.88763 -10.78277 -10.48139 -10.24469 -10.10455 -9.34276 -9.14609 -8.93960 -8.49579 -8.19898 -6.16342 -4.20942 0.20721 0.72287 2.45661 2.47809 3.13304 3.22906 3.27398 3.33735 3.40335 3.48537 3.52165 3.63235 3.95433 4.27944 4.36650 4.79410 5.02067 5.17669 5.28523 5.39252 5.61638 5.83191 5.87581 6.13193 6.45734 6.63970 6.68611 6.75461 7.25489 7.29437 7.52340 7.69143 7.91096 8.12808 8.70532 8.87986 9.45608 10.91108 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.023080 B = 0.004574 C = 0.003893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.885177 B = 6120.363835 C = 7190.096475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.034 3.966 3 H 0.060 0.940 4 C -0.508 4.508 5 H 0.076 0.924 6 C 0.061 3.939 7 N -0.894 5.894 8 Si 0.902 3.098 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.272 1.272 12 C 0.522 3.478 13 O -0.519 6.519 14 N -0.682 5.682 15 C 0.128 3.872 16 C -0.027 4.027 17 C -0.049 4.049 18 C 0.259 3.741 19 N -0.401 5.401 20 C 0.146 3.854 21 F -0.124 7.124 22 C -0.170 4.170 23 C 0.123 3.877 24 F -0.120 7.120 25 H 0.097 0.903 26 H 0.015 0.985 27 H 0.034 0.966 28 H 0.263 0.737 29 H 0.416 0.584 30 H 0.172 0.828 31 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.846 0.194 15.632 15.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.013 3.987 3 H 0.078 0.922 4 C -0.546 4.546 5 H 0.094 0.906 6 C -0.140 4.140 7 N -0.532 5.532 8 Si 0.729 3.271 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.197 1.197 12 C 0.314 3.686 13 O -0.392 6.392 14 N -0.329 5.329 15 C 0.030 3.970 16 C -0.050 4.050 17 C -0.055 4.055 18 C -0.057 4.057 19 N -0.076 5.076 20 C 0.123 3.877 21 F -0.102 7.102 22 C -0.190 4.190 23 C 0.099 3.901 24 F -0.099 7.099 25 H 0.115 0.885 26 H 0.034 0.966 27 H 0.053 0.947 28 H 0.073 0.927 29 H 0.253 0.747 30 H 0.190 0.810 31 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 0.066 -1.249 15.344 15.395 hybrid contribution -0.666 0.213 -0.538 0.883 sum -0.601 -1.037 14.805 14.854 Atomic orbital electron populations 1.21789 0.95980 1.00208 1.01384 1.18944 0.94499 0.97041 0.88250 0.92237 1.21087 1.31655 1.13097 0.88758 0.90602 1.24933 0.94915 0.94964 0.99194 1.69853 1.36697 1.22840 1.23859 0.86420 0.79498 0.79259 0.81887 1.20572 1.21205 1.19681 1.22530 0.77995 0.84253 0.83806 1.90548 1.36292 1.26379 1.85962 1.44194 1.57898 1.26920 1.03868 1.17729 0.92830 0.98701 0.87768 1.21268 0.94072 0.92969 0.96730 1.15830 0.90604 1.03889 0.95132 1.25103 0.92631 0.93677 0.94282 1.81226 1.10841 1.08785 1.06756 1.17034 0.93304 0.94760 0.82569 1.91556 1.91372 1.77045 1.50218 1.20689 0.97381 1.01135 0.99794 1.17289 0.82259 0.96013 0.94507 1.91552 1.43780 1.77751 1.96775 0.88462 0.96629 0.94721 0.92740 0.74707 0.81028 0.82158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 8.87 37.16 0.33 -2.49 16 2 C 0.03 0.75 2.64 -92.92 -0.24 0.50 16 3 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 4 C -0.51 -13.30 8.37 -34.44 -0.29 -13.59 16 5 H 0.08 2.10 6.75 -52.48 -0.35 1.74 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 7 N -0.89 -23.64 11.32 55.43 0.63 -23.01 16 8 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 16 9 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 12 C 0.52 10.25 6.99 -10.99 -0.08 10.18 16 13 O -0.52 -11.50 12.87 5.54 0.07 -11.43 16 14 N -0.68 -10.10 5.09 -9.83 -0.05 -10.15 16 15 C 0.13 1.68 6.31 -83.62 -0.53 1.15 16 16 C -0.03 -0.37 8.41 -38.99 -0.33 -0.70 16 17 C -0.05 -0.60 5.74 -106.80 -0.61 -1.21 16 18 C 0.26 3.60 14.97 -22.47 -0.34 3.27 16 19 N -0.40 -6.31 18.54 41.83 0.78 -5.54 16 20 C 0.15 1.53 7.27 -38.96 -0.28 1.25 16 21 F -0.12 -1.33 16.80 2.25 0.04 -1.30 16 22 C -0.17 -1.54 9.98 -39.53 -0.39 -1.93 16 23 C 0.12 1.33 7.31 -39.14 -0.29 1.04 16 24 F -0.12 -1.31 16.93 2.25 0.04 -1.27 16 25 H 0.10 2.27 6.07 -51.93 -0.32 1.96 16 26 H 0.01 0.25 7.67 -51.93 -0.40 -0.14 16 27 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 29 H 0.42 5.17 8.21 -40.82 -0.34 4.83 16 30 H 0.17 2.65 6.18 -52.49 -0.32 2.33 16 31 H 0.16 1.02 8.06 -52.48 -0.42 0.60 16 LS Contribution 292.12 15.07 4.40 4.40 Total: -1.00 -28.33 292.12 -4.39 -32.73 By element: Atomic # 1 Polarization: 2.94 SS G_CDS: -2.13 Total: 0.81 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: -3.14 Total: -1.03 kcal Atomic # 7 Polarization: -40.04 SS G_CDS: 1.35 Total: -38.69 kcal Atomic # 8 Polarization: -11.50 SS G_CDS: 0.07 Total: -11.43 kcal Atomic # 9 Polarization: -2.65 SS G_CDS: 0.08 Total: -2.57 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -28.33 -4.39 -32.73 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876346857.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.285 kcal (2) G-P(sol) polarization free energy of solvation -28.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds