Wall clock time and date at job start Tue Mar 31 2020 02:20:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47405 * 2 1 4 4 C 1.50705 * 109.46887 * 119.99611 * 2 1 3 5 5 H 1.07995 * 120.00026 * 120.00126 * 4 2 1 6 6 C 1.37872 * 119.99765 * 300.00026 * 4 2 1 7 7 N 1.31523 * 119.99827 * 180.02562 * 6 4 2 8 8 Si 1.86806 * 120.00350 * 359.97438 * 6 4 2 9 9 H 1.48503 * 109.46962 * 90.00073 * 8 6 4 10 10 H 1.48495 * 109.47040 * 209.99940 * 8 6 4 11 11 H 1.48495 * 109.46828 * 330.00287 * 8 6 4 12 12 C 1.50695 * 109.47315 * 239.99550 * 2 1 3 13 13 O 1.21299 * 120.00137 * 240.00714 * 12 2 1 14 14 N 1.34777 * 120.00113 * 60.00155 * 12 2 1 15 15 C 1.40163 * 120.00088 * 175.53194 * 14 12 2 16 16 C 1.38396 * 119.97269 * 34.68495 * 15 14 12 17 17 C 1.39683 * 119.82236 * 179.73508 * 16 15 14 18 18 C 1.43200 * 120.11503 * 180.29701 * 17 16 15 19 19 N 7.43960 * 104.96451 * 221.92514 * 2 1 3 20 20 C 1.39938 * 119.76803 * 0.54324 * 17 16 15 21 21 F 1.35103 * 120.03052 * 179.71027 * 20 17 16 22 22 C 1.38197 * 119.94044 * 359.73006 * 20 17 16 23 23 C 1.38406 * 120.17081 * 359.97438 * 22 20 17 24 24 F 1.35103 * 119.88120 * 179.97438 * 23 22 20 25 25 H 1.09001 * 109.46920 * 60.00160 * 1 2 3 26 26 H 1.08997 * 109.47236 * 300.00514 * 1 2 3 27 27 H 1.08998 * 109.47405 * 179.97438 * 1 2 3 28 28 H 0.97002 * 119.99716 * 179.97438 * 7 6 4 29 29 H 0.96996 * 119.99558 * 355.52277 * 14 12 2 30 30 H 1.07993 * 120.08566 * 359.97438 * 16 15 14 31 31 H 1.07995 * 119.91212 * 179.97438 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6532 -1.5884 1.1316 6 6 1.6991 -0.2392 2.4827 7 7 2.1379 -0.8588 3.5567 8 14 0.6258 1.2801 2.6540 9 1 -0.8022 0.8748 2.6992 10 1 0.9771 1.9956 3.9069 11 1 0.8491 2.1774 1.4921 12 6 2.0323 -0.7105 -1.2304 13 8 2.7296 -1.6968 -1.1190 14 7 1.7068 -0.2501 -2.4545 15 6 2.2493 -0.8536 -3.5973 16 6 2.4848 -2.2173 -3.6134 17 6 3.0204 -2.8163 -4.7560 18 6 3.2605 -4.2278 -4.7818 19 7 3.4510 -5.3475 -4.8023 20 6 3.3262 -2.0315 -5.8735 21 9 3.8499 -2.6045 -6.9793 22 6 3.0925 -0.6698 -5.8448 23 6 2.5560 -0.0797 -4.7136 24 9 2.3304 1.2522 -4.6918 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.9038 -0.5271 4.4376 29 1 1.0970 0.4988 -2.5446 30 1 2.2514 -2.8172 -2.7463 31 1 3.3291 -0.0645 -6.7073 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000876346858.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:20:36 Heat of formation + Delta-G solvation = -60.647662 kcal Electronic energy + Delta-G solvation = -20815.572672 eV Core-core repulsion = 17119.833357 eV Total energy + Delta-G solvation = -3695.739316 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.076 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.35745 -49.32390 -40.40862 -38.56416 -36.57092 -34.55893 -34.10201 -31.57314 -31.44740 -29.35332 -25.31550 -24.48335 -24.13718 -22.58619 -19.96382 -19.50516 -18.45162 -17.80221 -17.04389 -16.86833 -16.39660 -15.85682 -15.63664 -15.31248 -14.91411 -14.77403 -14.51246 -14.18097 -13.86870 -13.55635 -13.49813 -13.02958 -12.79262 -12.67134 -12.44225 -12.21064 -11.99053 -11.78958 -11.19217 -10.78452 -10.50171 -10.30365 -9.78790 -9.39949 -9.27244 -9.06528 -8.70651 -8.28625 -6.17333 -4.20021 0.15553 0.66335 2.41784 2.44185 3.02313 3.10871 3.15680 3.21364 3.28955 3.42585 3.44431 3.58444 3.89327 4.22614 4.26303 4.73001 4.94919 5.10935 5.18866 5.33175 5.48758 5.65100 5.77688 5.92563 6.04485 6.08423 6.22984 6.52129 6.61672 6.95905 7.27163 7.28855 7.60289 8.35686 8.56504 8.99750 9.39524 10.95126 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.025165 B = 0.004617 C = 0.004042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.374462 B = 6062.756194 C = 6925.464888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.000 4.000 3 H 0.060 0.940 4 C -0.514 4.514 5 H 0.095 0.905 6 C 0.074 3.926 7 N -0.891 5.891 8 Si 0.883 3.117 9 H -0.277 1.277 10 H -0.294 1.294 11 H -0.266 1.266 12 C 0.531 3.469 13 O -0.504 6.504 14 N -0.684 5.684 15 C 0.126 3.874 16 C -0.026 4.026 17 C -0.048 4.048 18 C 0.257 3.743 19 N -0.398 5.398 20 C 0.149 3.851 21 F -0.123 7.123 22 C -0.170 4.170 23 C 0.124 3.876 24 F -0.121 7.121 25 H 0.034 0.966 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.266 0.734 29 H 0.415 0.585 30 H 0.173 0.827 31 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.565 4.985 -18.532 19.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.021 4.021 3 H 0.077 0.923 4 C -0.552 4.552 5 H 0.113 0.887 6 C -0.129 4.129 7 N -0.528 5.528 8 Si 0.713 3.287 9 H -0.204 1.204 10 H -0.221 1.221 11 H -0.192 1.192 12 C 0.321 3.679 13 O -0.375 6.375 14 N -0.331 5.331 15 C 0.028 3.972 16 C -0.049 4.049 17 C -0.053 4.053 18 C -0.059 4.059 19 N -0.073 5.073 20 C 0.126 3.874 21 F -0.101 7.101 22 C -0.190 4.190 23 C 0.100 3.900 24 F -0.099 7.099 25 H 0.053 0.947 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.252 0.748 30 H 0.191 0.809 31 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -1.744 2.571 -18.180 18.443 hybrid contribution -0.899 1.885 0.000 2.088 sum -2.643 4.455 -18.180 18.903 Atomic orbital electron populations 1.22173 0.96861 1.01907 0.99712 1.19355 0.93513 0.97798 0.91479 0.92268 1.20868 1.32801 1.14436 0.87048 0.88694 1.24965 0.95693 0.96542 0.95702 1.69873 1.44911 1.40006 0.97984 0.86932 0.80710 0.83686 0.77355 1.20365 1.22130 1.19154 1.21770 0.78432 0.84336 0.83339 1.90601 1.36020 1.25183 1.85715 1.44086 1.48287 1.36806 1.03903 1.17667 1.00388 0.91443 0.87681 1.21280 0.94089 0.92742 0.96746 1.15828 1.08508 0.85903 0.95074 1.25083 0.94255 0.92139 0.94386 1.81235 1.07902 1.11543 1.06634 1.17053 0.97617 0.90144 0.82607 1.91563 1.83594 1.84706 1.50232 1.20689 1.05106 0.93451 0.99760 1.17277 1.00499 0.77647 0.94527 1.91551 1.92040 1.29563 1.96773 0.94658 0.92801 0.92010 0.92345 0.74811 0.80943 0.82103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 8.57 37.16 0.32 -2.36 16 2 C 0.00 0.00 2.24 -92.92 -0.21 -0.21 16 3 H 0.06 1.19 7.20 -51.93 -0.37 0.81 16 4 C -0.51 -13.71 8.96 -34.44 -0.31 -14.02 16 5 H 0.10 2.90 7.00 -52.49 -0.37 2.53 16 6 C 0.07 2.01 5.45 -17.82 -0.10 1.91 16 7 N -0.89 -26.30 13.96 55.43 0.77 -25.53 16 8 Si 0.88 19.93 24.37 -169.99 -4.14 15.78 16 9 H -0.28 -6.04 6.87 56.52 0.39 -5.65 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.27 -5.50 6.53 56.52 0.37 -5.13 16 12 C 0.53 9.92 6.99 -10.99 -0.08 9.84 16 13 O -0.50 -11.03 12.87 5.54 0.07 -10.95 16 14 N -0.68 -9.35 5.15 -9.83 -0.05 -9.40 16 15 C 0.13 1.55 6.31 -83.61 -0.53 1.02 16 16 C -0.03 -0.33 8.40 -38.98 -0.33 -0.66 16 17 C -0.05 -0.56 5.74 -106.80 -0.61 -1.18 16 18 C 0.26 3.52 14.97 -22.48 -0.34 3.18 16 19 N -0.40 -6.22 18.54 41.84 0.78 -5.44 16 20 C 0.15 1.49 7.27 -38.96 -0.28 1.20 16 21 F -0.12 -1.28 16.80 2.25 0.04 -1.24 16 22 C -0.17 -1.44 9.98 -39.53 -0.39 -1.83 16 23 C 0.12 1.25 7.31 -39.14 -0.29 0.96 16 24 F -0.12 -1.21 16.94 2.25 0.04 -1.17 16 25 H 0.03 0.47 7.47 -51.93 -0.39 0.09 16 26 H 0.05 1.04 3.27 -51.93 -0.17 0.87 16 27 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 29 H 0.41 4.52 7.96 -40.82 -0.32 4.19 16 30 H 0.17 2.59 6.19 -52.49 -0.32 2.26 16 31 H 0.16 0.94 8.06 -52.49 -0.42 0.51 16 LS Contribution 284.92 15.07 4.29 4.29 Total: -1.00 -30.68 284.92 -3.32 -34.00 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -1.97 Total: 1.81 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -3.14 Total: -2.14 kcal Atomic # 7 Polarization: -41.87 SS G_CDS: 1.50 Total: -40.37 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.07 Total: -10.95 kcal Atomic # 9 Polarization: -2.49 SS G_CDS: 0.08 Total: -2.42 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -4.14 Total: 15.78 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -30.68 -3.32 -34.00 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876346858.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.651 kcal (2) G-P(sol) polarization free energy of solvation -30.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds