Wall clock time and date at job start Tue Mar 31 2020 01:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39718 * 120.11544 * 66.68925 * 3 2 1 5 5 C 1.38350 * 119.82706 * 179.97438 * 4 3 2 6 6 N 1.40165 * 119.97335 * 180.02562 * 5 4 3 7 7 C 1.34777 * 120.00251 * 24.82590 * 6 5 4 8 8 O 1.21291 * 119.99661 * 5.53222 * 7 6 5 9 9 C 1.50699 * 120.00066 * 185.53296 * 7 6 5 10 10 C 1.52999 * 109.47149 * 180.02562 * 9 7 6 11 11 C 1.50699 * 109.47149 * 179.97438 * 10 9 7 12 12 H 1.08002 * 119.99900 * 359.97438 * 11 10 9 13 13 C 1.37875 * 119.99633 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99805 * 180.02562 * 13 11 10 15 15 Si 1.86798 * 120.00377 * 359.97438 * 13 11 10 16 16 H 1.48507 * 109.46819 * 90.00351 * 15 13 11 17 17 H 1.48503 * 109.47442 * 210.00153 * 15 13 11 18 18 H 1.48497 * 109.47391 * 330.00553 * 15 13 11 19 19 C 1.39285 * 120.05451 * 359.97438 * 5 4 3 20 20 F 1.35102 * 119.88477 * 180.02562 * 19 5 4 21 21 C 1.38370 * 120.23934 * 0.02698 * 19 5 4 22 22 C 1.38238 * 120.17229 * 0.25202 * 21 19 5 23 23 F 1.35092 * 120.03223 * 179.70375 * 22 21 19 24 24 H 1.08007 * 120.08715 * 0.02562 * 4 3 2 25 25 H 0.96998 * 119.99501 * 204.82766 * 6 5 4 26 26 H 1.09004 * 109.46878 * 299.99664 * 9 7 6 27 27 H 1.08997 * 109.47006 * 59.99829 * 9 7 6 28 28 H 1.09002 * 109.46850 * 300.00248 * 10 9 7 29 29 H 1.08998 * 109.47052 * 59.99280 * 10 9 7 30 30 H 0.97003 * 120.00601 * 179.97438 * 14 13 11 31 31 H 1.07997 * 119.91614 * 179.97438 * 21 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2693 -0.4773 -1.1099 5 6 4.6528 -0.4734 -1.1037 6 7 5.3594 -0.9517 -2.2158 7 6 4.7838 -0.9434 -3.4345 8 8 3.6951 -0.4311 -3.5875 9 6 5.4930 -1.5707 -4.6069 10 6 4.6301 -1.4255 -5.8620 11 6 5.3395 -2.0522 -7.0346 12 1 6.3091 -2.5081 -6.8984 13 6 4.7512 -2.0427 -8.2815 14 7 5.3701 -2.5901 -9.3048 15 14 3.0745 -1.2537 -8.5173 16 1 3.2465 0.1808 -8.8612 17 1 2.3530 -1.9433 -9.6169 18 1 2.2912 -1.3710 -7.2612 19 6 5.3441 0.0063 0.0062 20 9 6.6951 0.0090 0.0084 21 6 4.6521 0.4802 1.1068 22 6 3.2698 0.4755 1.1132 23 9 2.5971 0.9332 2.1916 24 1 2.7328 -0.8481 -1.9709 25 1 6.2626 -1.2886 -2.1082 26 1 6.4486 -1.0703 -4.7636 27 1 5.6653 -2.6277 -4.4042 28 1 3.6742 -1.9256 -5.7055 29 1 4.4581 -0.3684 -6.0644 30 1 4.9561 -2.5838 -10.1820 31 1 5.1934 0.8506 1.9648 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000876348139.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:42:34 Heat of formation + Delta-G solvation = -71.312419 kcal Electronic energy + Delta-G solvation = -20293.961446 eV Core-core repulsion = 16597.759671 eV Total energy + Delta-G solvation = -3696.201774 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.076 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.50957 -49.47586 -40.72854 -38.79431 -36.72588 -34.92921 -33.70396 -31.74087 -31.52967 -29.76984 -26.32841 -24.66942 -23.68220 -21.63039 -20.15170 -19.65840 -18.64529 -18.13468 -17.18596 -17.01866 -16.59231 -16.14298 -15.85656 -15.48813 -15.07443 -15.01695 -14.52273 -14.20112 -14.01262 -13.71807 -13.66185 -13.16767 -12.93793 -12.80032 -12.66657 -12.37715 -12.13822 -11.56768 -11.09099 -10.73753 -10.34755 -10.21726 -9.91739 -9.66707 -9.43657 -9.31115 -8.60242 -8.45062 -6.11826 -4.12041 -0.00658 0.49142 2.19644 2.30225 2.70934 2.76032 3.25824 3.27856 3.31266 3.38950 3.41962 3.47002 3.71367 4.06020 4.42219 4.53529 4.75080 4.91507 5.16225 5.22773 5.23328 5.42891 5.59667 5.80436 5.85146 5.85456 6.32950 6.45048 7.13040 7.15920 7.19218 7.25828 7.65920 8.05293 8.41004 8.90015 9.50289 11.00756 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.022943 B = 0.003993 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.115070 B = 7010.314248 C = 8115.084036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C 0.255 3.745 3 C -0.043 4.043 4 C -0.037 4.037 5 C 0.126 3.874 6 N -0.675 5.675 7 C 0.514 3.486 8 O -0.513 6.513 9 C -0.120 4.120 10 C 0.000 4.000 11 C -0.529 4.529 12 H 0.074 0.926 13 C 0.071 3.929 14 N -0.901 5.901 15 Si 0.877 3.123 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.261 1.261 19 C 0.121 3.879 20 F -0.121 7.121 21 C -0.166 4.166 22 C 0.148 3.852 23 F -0.121 7.121 24 H 0.178 0.822 25 H 0.419 0.581 26 H 0.094 0.906 27 H 0.096 0.904 28 H 0.025 0.975 29 H 0.021 0.979 30 H 0.264 0.736 31 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.150 4.571 22.408 22.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.070 5.070 2 C -0.061 4.061 3 C -0.049 4.049 4 C -0.060 4.060 5 C 0.028 3.972 6 N -0.321 5.321 7 C 0.304 3.696 8 O -0.386 6.386 9 C -0.160 4.160 10 C -0.038 4.038 11 C -0.567 4.567 12 H 0.092 0.908 13 C -0.131 4.131 14 N -0.539 5.539 15 Si 0.704 3.296 16 H -0.202 1.202 17 H -0.214 1.214 18 H -0.186 1.186 19 C 0.098 3.902 20 F -0.099 7.099 21 C -0.186 4.186 22 C 0.125 3.875 23 F -0.100 7.100 24 H 0.195 0.805 25 H 0.256 0.744 26 H 0.112 0.888 27 H 0.114 0.886 28 H 0.044 0.956 29 H 0.040 0.960 30 H 0.074 0.926 31 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -0.369 4.870 22.021 22.556 hybrid contribution 0.315 0.364 0.041 0.483 sum -0.054 5.233 22.062 22.674 Atomic orbital electron populations 1.81254 1.11595 1.07586 1.06525 1.25077 0.92042 0.94471 0.94506 1.15822 0.85534 1.08091 0.95408 1.21360 0.91777 0.95402 0.97424 1.17654 0.91490 0.99949 0.88123 1.43933 1.19298 1.63075 1.05803 1.22018 0.86417 0.77880 0.83242 1.90641 1.21165 1.42926 1.83909 1.21761 1.00892 1.01181 0.92160 1.19413 0.95405 0.97766 0.91180 1.21045 1.05924 1.38013 0.91705 0.90799 1.24961 0.97555 0.94701 0.95861 1.69900 1.38708 1.44800 1.00474 0.86814 0.84781 0.79715 0.78326 1.20177 1.21351 1.18578 1.17149 0.77337 1.01020 0.94729 1.91556 1.27635 1.94035 1.96669 1.20712 0.92224 1.05507 1.00156 1.17070 0.88994 0.98100 0.83345 1.91569 1.80055 1.86026 1.52314 0.80506 0.74355 0.88783 0.88623 0.95623 0.96045 0.92578 0.81943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -5.76 18.54 41.84 0.78 -4.99 16 2 C 0.25 3.19 14.97 -22.47 -0.34 2.85 16 3 C -0.04 -0.45 5.74 -106.80 -0.61 -1.06 16 4 C -0.04 -0.41 8.42 -38.99 -0.33 -0.74 16 5 C 0.13 1.27 6.43 -83.62 -0.54 0.73 16 6 N -0.68 -7.15 5.31 -9.83 -0.05 -7.20 16 7 C 0.51 7.56 7.63 -10.99 -0.08 7.48 16 8 O -0.51 -9.23 13.15 5.55 0.07 -9.16 16 9 C -0.12 -1.96 5.64 -27.88 -0.16 -2.12 16 10 C 0.00 0.01 3.33 -27.88 -0.09 -0.09 16 11 C -0.53 -14.22 9.66 -34.44 -0.33 -14.55 16 12 H 0.07 2.07 7.99 -52.49 -0.42 1.66 16 13 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 14 N -0.90 -26.97 13.96 55.43 0.77 -26.20 16 15 Si 0.88 21.64 27.47 -169.99 -4.67 16.97 16 16 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 18 H -0.26 -6.36 6.54 56.52 0.37 -5.99 16 19 C 0.12 0.99 7.31 -39.14 -0.29 0.71 16 20 F -0.12 -0.97 16.80 2.25 0.04 -0.94 16 21 C -0.17 -1.16 9.98 -39.53 -0.39 -1.55 16 22 C 0.15 1.28 7.27 -38.96 -0.28 1.00 16 23 F -0.12 -1.13 16.80 2.25 0.04 -1.09 16 24 H 0.18 2.32 5.78 -52.48 -0.30 2.02 16 25 H 0.42 3.22 8.45 -40.82 -0.34 2.87 16 26 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 27 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 28 H 0.03 0.60 7.16 -51.93 -0.37 0.23 16 29 H 0.02 0.50 7.53 -51.93 -0.39 0.11 16 30 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 31 H 0.16 0.73 8.06 -52.49 -0.42 0.30 16 LS Contribution 294.19 15.07 4.43 4.43 Total: -1.00 -31.90 294.19 -4.40 -36.30 By element: Atomic # 1 Polarization: -0.44 SS G_CDS: -2.26 Total: -2.70 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: -3.54 Total: -5.42 kcal Atomic # 7 Polarization: -39.88 SS G_CDS: 1.50 Total: -38.39 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.07 Total: -9.16 kcal Atomic # 9 Polarization: -2.10 SS G_CDS: 0.08 Total: -2.03 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.67 Total: 16.97 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -31.90 -4.40 -36.30 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876348139.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.014 kcal (2) G-P(sol) polarization free energy of solvation -31.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds