Wall clock time and date at job start Tue Mar 31 2020 01:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39718 * 120.11544 * 66.68925 * 3 2 1 5 5 C 1.38350 * 119.82706 * 179.97438 * 4 3 2 6 6 N 1.40165 * 119.97335 * 180.02562 * 5 4 3 7 7 C 1.34777 * 120.00251 * 24.82590 * 6 5 4 8 8 O 1.21291 * 119.99661 * 5.53222 * 7 6 5 9 9 C 1.50699 * 120.00066 * 185.53296 * 7 6 5 10 10 C 1.52999 * 109.47149 * 180.02562 * 9 7 6 11 11 C 1.50699 * 109.47149 * 179.97438 * 10 9 7 12 12 H 1.08002 * 119.99900 * 359.97438 * 11 10 9 13 13 C 1.37875 * 119.99633 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99805 * 180.02562 * 13 11 10 15 15 Si 1.86798 * 120.00377 * 359.97438 * 13 11 10 16 16 H 1.48507 * 109.46819 * 90.00351 * 15 13 11 17 17 H 1.48503 * 109.47442 * 210.00153 * 15 13 11 18 18 H 1.48497 * 109.47391 * 330.00553 * 15 13 11 19 19 C 1.39285 * 120.05451 * 359.97438 * 5 4 3 20 20 F 1.35102 * 119.88477 * 180.02562 * 19 5 4 21 21 C 1.38370 * 120.23934 * 0.02698 * 19 5 4 22 22 C 1.38238 * 120.17229 * 0.25202 * 21 19 5 23 23 F 1.35092 * 120.03223 * 179.70375 * 22 21 19 24 24 H 1.08007 * 120.08715 * 0.02562 * 4 3 2 25 25 H 0.96998 * 119.99501 * 204.82766 * 6 5 4 26 26 H 1.09004 * 109.46878 * 299.99664 * 9 7 6 27 27 H 1.08997 * 109.47006 * 59.99829 * 9 7 6 28 28 H 1.09002 * 109.46850 * 300.00248 * 10 9 7 29 29 H 1.08998 * 109.47052 * 59.99280 * 10 9 7 30 30 H 0.97003 * 120.00601 * 179.97438 * 14 13 11 31 31 H 1.07997 * 119.91614 * 179.97438 * 21 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2693 -0.4773 -1.1099 5 6 4.6528 -0.4734 -1.1037 6 7 5.3594 -0.9517 -2.2158 7 6 4.7838 -0.9434 -3.4345 8 8 3.6951 -0.4311 -3.5875 9 6 5.4930 -1.5707 -4.6069 10 6 4.6301 -1.4255 -5.8620 11 6 5.3395 -2.0522 -7.0346 12 1 6.3091 -2.5081 -6.8984 13 6 4.7512 -2.0427 -8.2815 14 7 5.3701 -2.5901 -9.3048 15 14 3.0745 -1.2537 -8.5173 16 1 3.2465 0.1808 -8.8612 17 1 2.3530 -1.9433 -9.6169 18 1 2.2912 -1.3710 -7.2612 19 6 5.3441 0.0063 0.0062 20 9 6.6951 0.0090 0.0084 21 6 4.6521 0.4802 1.1068 22 6 3.2698 0.4755 1.1132 23 9 2.5971 0.9332 2.1916 24 1 2.7328 -0.8481 -1.9709 25 1 6.2626 -1.2886 -2.1082 26 1 6.4486 -1.0703 -4.7636 27 1 5.6653 -2.6277 -4.4042 28 1 3.6742 -1.9256 -5.7055 29 1 4.4581 -0.3684 -6.0644 30 1 4.9561 -2.5838 -10.1820 31 1 5.1934 0.8506 1.9648 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000876348139.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:42:33 Heat of formation + Delta-G solvation = -91.566077 kcal Electronic energy + Delta-G solvation = -20294.839710 eV Core-core repulsion = 16597.759671 eV Total energy + Delta-G solvation = -3697.080039 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.076 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.21993 -50.17745 -41.72013 -39.74949 -37.74706 -35.93654 -35.54954 -33.40431 -32.43245 -30.78586 -27.96535 -25.49164 -24.66791 -23.09028 -21.39920 -20.58980 -19.47480 -19.24211 -18.66032 -17.89180 -17.55478 -17.19634 -16.73780 -16.43652 -16.23553 -15.95162 -15.74215 -15.38746 -15.03039 -15.00039 -14.65719 -14.63872 -14.45576 -13.87828 -13.64328 -13.42371 -13.30750 -12.99333 -12.86156 -12.11442 -11.97334 -11.75134 -11.63863 -11.37873 -10.88490 -10.76221 -10.23621 -9.28393 -8.29763 -6.32361 -0.78525 -0.24850 1.26404 1.33887 1.34410 1.37823 1.50125 1.68539 1.81505 2.35599 2.39968 2.46113 2.60878 2.96155 3.06896 3.35963 3.66912 3.90355 4.08333 4.36523 4.43413 4.49203 4.50787 4.64889 4.77797 4.99603 5.06973 5.37605 5.46477 5.50817 5.63138 6.17769 6.21176 6.28121 6.75086 7.00208 7.33211 8.85816 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.022943 B = 0.003993 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.115070 B = 7010.314248 C = 8115.084036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C 0.272 3.728 3 C -0.052 4.052 4 C -0.042 4.042 5 C 0.112 3.888 6 N -0.657 5.657 7 C 0.522 3.478 8 O -0.551 6.551 9 C -0.115 4.115 10 C 0.001 3.999 11 C -0.527 4.527 12 H 0.053 0.947 13 C 0.014 3.986 14 N -0.944 5.944 15 Si 0.934 3.066 16 H -0.270 1.270 17 H -0.283 1.283 18 H -0.258 1.258 19 C 0.142 3.858 20 F -0.113 7.113 21 C -0.143 4.143 22 C 0.161 3.839 23 F -0.122 7.122 24 H 0.155 0.845 25 H 0.435 0.565 26 H 0.112 0.888 27 H 0.114 0.886 28 H 0.014 0.986 29 H 0.012 0.988 30 H 0.266 0.734 31 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.177 5.460 24.884 25.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.116 5.116 2 C -0.044 4.044 3 C -0.057 4.057 4 C -0.065 4.065 5 C 0.015 3.985 6 N -0.304 5.304 7 C 0.313 3.687 8 O -0.428 6.428 9 C -0.154 4.154 10 C -0.037 4.037 11 C -0.565 4.565 12 H 0.071 0.929 13 C -0.184 4.184 14 N -0.585 5.585 15 Si 0.759 3.241 16 H -0.195 1.195 17 H -0.209 1.209 18 H -0.182 1.182 19 C 0.119 3.881 20 F -0.091 7.091 21 C -0.163 4.163 22 C 0.137 3.863 23 F -0.100 7.100 24 H 0.172 0.828 25 H 0.275 0.725 26 H 0.130 0.870 27 H 0.132 0.868 28 H 0.032 0.968 29 H 0.031 0.969 30 H 0.075 0.925 31 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 0.692 5.755 24.547 25.222 hybrid contribution 0.119 0.075 -0.623 0.639 sum 0.811 5.830 23.924 24.638 Atomic orbital electron populations 1.81256 1.12924 1.09359 1.08011 1.25447 0.92500 0.93188 0.93216 1.15769 0.84285 1.09461 0.96208 1.21068 0.92319 0.96129 0.97005 1.17645 0.91142 1.01203 0.88512 1.43501 1.19753 1.62388 1.04732 1.21486 0.85666 0.77494 0.84071 1.90651 1.22673 1.44760 1.84677 1.21544 1.00434 1.02974 0.90459 1.19276 0.95544 0.96338 0.92565 1.21438 1.05193 1.36783 0.93062 0.92862 1.25772 1.01024 0.95593 0.95962 1.70020 1.40526 1.46897 1.01078 0.85889 0.80843 0.79031 0.78295 1.19528 1.20922 1.18212 1.17033 0.77469 0.99648 0.93961 1.91592 1.27151 1.93817 1.96577 1.20962 0.91234 1.03562 1.00502 1.17070 0.89509 0.97179 0.82496 1.91580 1.80282 1.85928 1.52244 0.82802 0.72460 0.86960 0.86843 0.96768 0.96937 0.92489 0.78381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -13.02 18.54 19.01 0.35 -12.66 16 2 C 0.27 6.73 14.97 88.33 1.32 8.05 16 3 C -0.05 -1.00 5.74 -21.27 -0.12 -1.12 16 4 C -0.04 -0.89 8.42 22.65 0.19 -0.70 16 5 C 0.11 1.99 6.43 38.09 0.25 2.24 16 6 N -0.66 -12.32 5.31 -303.39 -1.61 -13.93 16 7 C 0.52 14.64 7.63 87.66 0.67 15.31 16 8 O -0.55 -19.63 13.15 -3.07 -0.04 -19.67 16 9 C -0.11 -3.57 5.64 29.85 0.17 -3.40 16 10 C 0.00 0.04 3.33 29.85 0.10 0.13 16 11 C -0.53 -28.51 9.66 25.60 0.25 -28.26 16 12 H 0.05 3.03 7.99 -2.91 -0.02 3.01 16 13 C 0.01 0.81 5.47 84.65 0.46 1.27 16 14 N -0.94 -57.55 13.96 21.45 0.30 -57.25 16 15 Si 0.93 45.03 27.47 68.60 1.88 46.91 16 16 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 17 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 18 H -0.26 -12.18 6.54 99.48 0.65 -11.53 16 19 C 0.14 1.76 7.31 22.55 0.16 1.93 16 20 F -0.11 -1.32 16.80 44.97 0.76 -0.56 16 21 C -0.14 -1.36 9.98 22.30 0.22 -1.13 16 22 C 0.16 2.30 7.27 22.67 0.16 2.46 16 23 F -0.12 -1.93 16.80 44.97 0.76 -1.18 16 24 H 0.15 4.10 5.78 -2.91 -0.02 4.08 16 25 H 0.44 5.27 8.45 -92.71 -0.78 4.49 16 26 H 0.11 3.08 8.14 -2.38 -0.02 3.06 16 27 H 0.11 3.12 8.14 -2.39 -0.02 3.10 16 28 H 0.01 0.66 7.16 -2.39 -0.02 0.64 16 29 H 0.01 0.57 7.53 -2.39 -0.02 0.55 16 30 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 31 H 0.20 0.57 8.06 -2.91 -0.02 0.55 16 Total: -1.00 -70.34 294.19 6.60 -63.73 By element: Atomic # 1 Polarization: -2.53 SS G_CDS: 0.37 Total: -2.15 kcal Atomic # 6 Polarization: -7.06 SS G_CDS: 3.84 Total: -3.23 kcal Atomic # 7 Polarization: -82.89 SS G_CDS: -0.96 Total: -83.85 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -0.04 Total: -19.67 kcal Atomic # 9 Polarization: -3.25 SS G_CDS: 1.51 Total: -1.74 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 1.88 Total: 46.91 kcal Total: -70.34 6.60 -63.73 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000876348139.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.834 kcal (2) G-P(sol) polarization free energy of solvation -70.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds