Wall clock time and date at job start Tue Mar 31 2020 01:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00440 * 2 1 4 4 H 1.48491 * 109.47194 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47109 * 300.00735 * 3 2 1 6 6 H 1.48507 * 109.46737 * 59.99958 * 3 2 1 7 7 C 1.37883 * 119.99772 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00180 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99769 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47047 * 180.02562 * 9 7 2 11 11 N 1.46901 * 109.47202 * 180.02562 * 10 9 7 12 12 C 1.46901 * 110.99832 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47186 * 179.97438 * 12 11 10 14 14 C 1.34042 * 124.91382 * 89.99727 * 13 12 11 15 15 C 1.46622 * 106.17255 * 180.02562 * 14 13 12 16 16 C 1.40814 * 105.41110 * 0.02562 * 15 14 13 17 17 C 1.39167 * 118.02376 * 179.97438 * 16 15 14 18 18 C 1.37801 * 118.94702 * 359.97438 * 17 16 15 19 19 N 1.32251 * 121.53253 * 0.04653 * 18 17 16 20 20 C 1.31892 * 122.08734 * 359.93173 * 19 18 17 21 21 Cl 1.73598 * 119.96325 * 180.32216 * 20 19 18 22 22 O 1.34374 * 107.35402 * 359.97438 * 16 15 14 23 23 H 0.97005 * 119.99412 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.47387 * 60.00451 * 9 7 2 25 25 H 1.08999 * 109.47687 * 299.99500 * 9 7 2 26 26 H 1.09001 * 109.47158 * 59.99822 * 10 9 7 27 27 H 1.09004 * 109.47006 * 299.99824 * 10 9 7 28 28 H 1.00899 * 110.99904 * 303.95040 * 11 10 9 29 29 H 1.09005 * 109.47226 * 59.99772 * 12 11 10 30 30 H 1.09003 * 109.47207 * 299.99859 * 12 11 10 31 31 H 1.08003 * 126.90840 * 0.02562 * 14 13 12 32 32 H 1.08004 * 120.52805 * 179.97438 * 17 16 15 33 33 H 1.08005 * 119.23416 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6622 -0.0005 11 7 1.5106 -4.9343 -0.0012 12 6 2.4350 -6.0760 -0.0018 13 6 1.6470 -7.3605 -0.0018 14 6 1.2453 -8.0141 -1.1009 15 6 0.5189 -9.1974 -0.6298 16 6 0.5615 -9.1276 0.7759 17 6 -0.0608 -10.1401 1.5001 18 6 -0.6878 -11.1597 0.8173 19 7 -0.7094 -11.1961 -0.5045 20 6 -0.1366 -10.2635 -1.2405 21 17 -0.2058 -10.3616 -2.9723 22 8 1.2439 -8.0168 1.1015 23 1 -0.4849 0.8401 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6247 -2.5572 0.8897 26 1 2.8718 -3.6044 0.8894 27 1 2.8718 -3.6045 -0.8906 28 1 0.8739 -4.9846 0.7800 29 1 3.0631 -6.0354 0.8882 30 1 3.0630 -6.0346 -0.8918 31 1 1.4214 -7.7269 -2.1271 32 1 -0.0525 -10.1269 2.5800 33 1 -1.1725 -11.9477 1.3747 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000877304304.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:32 Heat of formation + Delta-G solvation = 26.179417 kcal Electronic energy + Delta-G solvation = -18094.224789 eV Core-core repulsion = 14954.047258 eV Total energy + Delta-G solvation = -3140.177531 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.95928 -39.42709 -36.88837 -36.30559 -33.47915 -32.89220 -32.00424 -30.83550 -28.91112 -26.02971 -24.14620 -23.63478 -22.52791 -21.52178 -20.68264 -18.32127 -17.23791 -16.72458 -16.49322 -16.30475 -15.56308 -15.21354 -14.67278 -14.47192 -14.40846 -13.93752 -13.67841 -13.22890 -12.63971 -12.35302 -12.15653 -11.96242 -11.88927 -11.54358 -11.15145 -10.99404 -10.60194 -10.39933 -10.18336 -10.10945 -9.74037 -9.51112 -9.21467 -8.49410 -8.41011 -8.07621 -6.04937 -4.08157 0.25420 0.84980 1.50864 2.00556 2.24387 3.26635 3.28125 3.35755 3.39219 3.87490 4.14256 4.35300 4.38865 4.56354 4.74104 4.77233 4.90501 5.16708 5.29165 5.31355 5.40413 5.48331 5.60922 5.93500 6.04255 6.16099 6.21319 6.74467 6.83867 7.21562 7.34852 7.57905 7.66534 7.80392 7.99196 8.35211 8.99074 9.56133 11.06435 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.031088 B = 0.002841 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.444787 B = 9853.112225 C =10213.111884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.523 4.523 8 H 0.056 0.944 9 C 0.025 3.975 10 C 0.065 3.935 11 N -0.687 5.687 12 C 0.130 3.870 13 C 0.053 3.947 14 C -0.169 4.169 15 C -0.167 4.167 16 C 0.100 3.900 17 C -0.152 4.152 18 C 0.122 3.878 19 N -0.486 5.486 20 C 0.231 3.769 21 Cl -0.020 7.020 22 O -0.182 6.182 23 H 0.261 0.739 24 H 0.027 0.973 25 H 0.015 0.985 26 H 0.021 0.979 27 H 0.064 0.936 28 H 0.342 0.658 29 H 0.050 0.950 30 H 0.108 0.892 31 H 0.169 0.831 32 H 0.151 0.849 33 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.554 -22.500 0.858 22.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.562 4.562 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.062 4.062 11 N -0.318 5.318 12 C 0.001 3.999 13 C 0.006 3.994 14 C -0.190 4.190 15 C -0.171 4.171 16 C 0.045 3.955 17 C -0.173 4.173 18 C -0.029 4.029 19 N -0.199 5.199 20 C 0.061 3.939 21 Cl 0.009 6.991 22 O -0.081 6.081 23 H 0.070 0.930 24 H 0.045 0.955 25 H 0.033 0.967 26 H 0.039 0.961 27 H 0.082 0.918 28 H 0.160 0.840 29 H 0.068 0.932 30 H 0.126 0.874 31 H 0.187 0.813 32 H 0.169 0.831 33 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 0.961 -22.980 -0.057 23.000 hybrid contribution 1.026 1.577 1.072 2.166 sum 1.987 -21.403 1.015 21.519 Atomic orbital electron populations 1.69984 1.06059 1.26596 1.50452 1.25013 0.94854 0.99305 0.95206 0.86515 0.80042 0.83682 0.77628 1.19738 1.20934 1.21009 1.21178 0.93028 0.90864 1.51131 0.92601 1.19082 0.93993 0.90268 0.97941 1.22248 0.97189 0.87594 0.99175 1.60725 1.19283 1.01503 1.50323 1.20598 0.92597 0.83621 1.03042 1.22668 0.98785 0.95137 0.82846 1.22181 1.02692 0.93812 1.00304 1.20451 1.04584 0.98187 0.93915 1.19623 0.95039 0.88375 0.92486 1.21084 1.01118 0.93136 1.01949 1.22406 0.95755 0.96660 0.88082 1.67111 1.19110 1.26087 1.07638 1.21006 0.94780 0.90337 0.87793 1.98417 1.96718 1.97820 1.06180 1.83968 1.58542 1.30809 1.34804 0.92962 0.95461 0.96705 0.96063 0.91773 0.84004 0.93221 0.87391 0.81324 0.83093 0.80605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.56 13.29 55.43 0.74 -25.82 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 4 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.52 -14.47 9.11 -34.44 -0.31 -14.79 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.62 5.23 -27.88 -0.15 0.47 16 10 C 0.07 1.28 5.62 -3.82 -0.02 1.26 16 11 N -0.69 -11.39 6.49 -115.05 -0.75 -12.14 16 12 C 0.13 1.68 6.19 -4.98 -0.03 1.65 16 13 C 0.05 0.69 6.75 -35.79 -0.24 0.44 16 14 C -0.17 -2.11 10.96 -37.68 -0.41 -2.53 16 15 C -0.17 -2.15 6.25 -105.16 -0.66 -2.80 16 16 C 0.10 1.23 7.49 -38.26 -0.29 0.95 16 17 C -0.15 -1.41 10.13 -39.40 -0.40 -1.81 16 18 C 0.12 1.08 11.14 -17.53 -0.20 0.89 16 19 N -0.49 -5.74 10.34 -10.18 -0.11 -5.84 16 20 C 0.23 2.89 7.32 -17.15 -0.13 2.76 16 21 Cl -0.02 -0.23 29.10 -51.86 -1.51 -1.74 16 22 O -0.18 -2.40 10.57 4.83 0.05 -2.35 16 23 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 24 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 28 H 0.34 5.69 8.72 -39.29 -0.34 5.35 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.11 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.17 1.87 8.06 -52.48 -0.42 1.44 16 32 H 0.15 0.95 8.06 -52.48 -0.42 0.52 16 33 H 0.18 0.87 8.06 -52.48 -0.42 0.45 16 LS Contribution 310.08 15.07 4.67 4.67 Total: -1.00 -31.03 310.08 -8.54 -39.57 By element: Atomic # 1 Polarization: 3.02 SS G_CDS: -3.69 Total: -0.67 kcal Atomic # 6 Polarization: -9.04 SS G_CDS: -2.93 Total: -11.97 kcal Atomic # 7 Polarization: -43.69 SS G_CDS: -0.12 Total: -43.80 kcal Atomic # 8 Polarization: -2.40 SS G_CDS: 0.05 Total: -2.35 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 17 Polarization: -0.23 SS G_CDS: -1.51 Total: -1.74 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -31.03 -8.54 -39.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877304304.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.747 kcal (2) G-P(sol) polarization free energy of solvation -31.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds