Wall clock time and date at job start Tue Mar 31 2020 01:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00440 * 2 1 4 4 H 1.48491 * 109.47194 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47109 * 300.00735 * 3 2 1 6 6 H 1.48507 * 109.46737 * 59.99958 * 3 2 1 7 7 C 1.37883 * 119.99772 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00180 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99769 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47047 * 180.02562 * 9 7 2 11 11 N 1.46901 * 109.47202 * 180.02562 * 10 9 7 12 12 C 1.46901 * 110.99832 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47186 * 179.97438 * 12 11 10 14 14 C 1.34042 * 124.91382 * 89.99727 * 13 12 11 15 15 C 1.46622 * 106.17255 * 180.02562 * 14 13 12 16 16 C 1.40814 * 105.41110 * 0.02562 * 15 14 13 17 17 C 1.39167 * 118.02376 * 179.97438 * 16 15 14 18 18 C 1.37801 * 118.94702 * 359.97438 * 17 16 15 19 19 N 1.32251 * 121.53253 * 0.04653 * 18 17 16 20 20 C 1.31892 * 122.08734 * 359.93173 * 19 18 17 21 21 Cl 1.73598 * 119.96325 * 180.32216 * 20 19 18 22 22 O 1.34374 * 107.35402 * 359.97438 * 16 15 14 23 23 H 0.97005 * 119.99412 * 359.97438 * 1 2 3 24 24 H 1.08997 * 109.47387 * 60.00451 * 9 7 2 25 25 H 1.08999 * 109.47687 * 299.99500 * 9 7 2 26 26 H 1.09001 * 109.47158 * 59.99822 * 10 9 7 27 27 H 1.09004 * 109.47006 * 299.99824 * 10 9 7 28 28 H 1.00899 * 110.99904 * 303.95040 * 11 10 9 29 29 H 1.09005 * 109.47226 * 59.99772 * 12 11 10 30 30 H 1.09003 * 109.47207 * 299.99859 * 12 11 10 31 31 H 1.08003 * 126.90840 * 0.02562 * 14 13 12 32 32 H 1.08004 * 120.52805 * 179.97438 * 17 16 15 33 33 H 1.08005 * 119.23416 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6622 -0.0005 11 7 1.5106 -4.9343 -0.0012 12 6 2.4350 -6.0760 -0.0018 13 6 1.6470 -7.3605 -0.0018 14 6 1.2453 -8.0141 -1.1009 15 6 0.5189 -9.1974 -0.6298 16 6 0.5615 -9.1276 0.7759 17 6 -0.0608 -10.1401 1.5001 18 6 -0.6878 -11.1597 0.8173 19 7 -0.7094 -11.1961 -0.5045 20 6 -0.1366 -10.2635 -1.2405 21 17 -0.2058 -10.3616 -2.9723 22 8 1.2439 -8.0168 1.1015 23 1 -0.4849 0.8401 0.0004 24 1 0.6240 -2.5567 -0.8903 25 1 0.6247 -2.5572 0.8897 26 1 2.8718 -3.6044 0.8894 27 1 2.8718 -3.6045 -0.8906 28 1 0.8739 -4.9846 0.7800 29 1 3.0631 -6.0354 0.8882 30 1 3.0630 -6.0346 -0.8918 31 1 1.4214 -7.7269 -2.1271 32 1 -0.0525 -10.1269 2.5800 33 1 -1.1725 -11.9477 1.3747 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877304304.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:52:31 Heat of formation + Delta-G solvation = 5.836530 kcal Electronic energy + Delta-G solvation = -18095.106923 eV Core-core repulsion = 14954.047258 eV Total energy + Delta-G solvation = -3141.059665 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.86216 -40.26823 -37.80101 -37.64844 -35.20587 -34.09321 -32.96539 -32.13003 -30.32151 -27.40690 -25.48189 -24.81873 -23.46978 -22.59092 -22.32410 -19.17895 -18.54866 -18.16120 -17.60236 -17.34594 -16.87630 -16.42352 -16.00169 -15.62328 -15.48381 -15.08434 -14.78525 -14.45069 -14.16379 -13.82274 -13.54127 -13.02646 -12.86862 -12.80948 -12.77362 -12.42974 -12.40228 -11.95351 -11.48468 -11.34359 -11.22729 -11.00441 -10.58793 -10.56627 -9.48891 -9.30520 -8.20077 -6.31380 -0.59018 -0.01434 0.64469 1.06172 1.35648 1.41740 1.42341 1.55337 2.41197 2.44839 2.98918 3.14115 3.25924 3.41584 3.59916 3.73554 3.97541 4.07783 4.29294 4.34514 4.51663 4.54471 4.59092 4.65826 4.78027 5.06564 5.10808 5.21439 5.44329 5.65289 5.75670 5.82157 6.04440 6.19162 6.36460 6.54436 6.86751 7.38286 8.92291 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.031088 B = 0.002841 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 900.444787 B = 9853.112225 C =10213.111884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.967 3.033 4 H -0.259 1.259 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.541 4.541 8 H 0.065 0.935 9 C 0.029 3.971 10 C 0.084 3.916 11 N -0.695 5.695 12 C 0.136 3.864 13 C 0.042 3.958 14 C -0.170 4.170 15 C -0.187 4.187 16 C 0.083 3.917 17 C -0.144 4.144 18 C 0.128 3.872 19 N -0.502 5.502 20 C 0.215 3.785 21 Cl -0.021 7.021 22 O -0.192 6.192 23 H 0.263 0.737 24 H -0.005 1.005 25 H -0.010 1.010 26 H 0.029 0.971 27 H 0.071 0.929 28 H 0.340 0.660 29 H 0.063 0.937 30 H 0.125 0.875 31 H 0.178 0.822 32 H 0.184 0.816 33 H 0.220 0.780 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.554 -23.346 1.654 23.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.791 3.209 4 H -0.183 1.183 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.580 4.580 8 H 0.083 0.917 9 C -0.009 4.009 10 C -0.044 4.044 11 N -0.327 5.327 12 C 0.007 3.993 13 C -0.005 4.005 14 C -0.191 4.191 15 C -0.191 4.191 16 C 0.027 3.973 17 C -0.164 4.164 18 C -0.023 4.023 19 N -0.216 5.216 20 C 0.046 3.954 21 Cl 0.008 6.992 22 O -0.092 6.092 23 H 0.072 0.928 24 H 0.013 0.987 25 H 0.008 0.992 26 H 0.048 0.952 27 H 0.090 0.910 28 H 0.157 0.843 29 H 0.081 0.919 30 H 0.143 0.857 31 H 0.195 0.805 32 H 0.202 0.798 33 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 1.976 -23.850 0.730 23.943 hybrid contribution 0.636 1.699 0.861 2.008 sum 2.612 -22.151 1.592 22.361 Atomic orbital electron populations 1.70124 1.07896 1.27707 1.51602 1.25993 0.95738 1.03468 0.94733 0.85369 0.79177 0.78655 0.77650 1.18275 1.20560 1.20534 1.21651 0.93708 0.92040 1.50590 0.91688 1.18944 0.94427 0.92397 0.95116 1.21843 0.95607 0.87044 0.99887 1.60591 1.20005 1.01582 1.50486 1.20620 0.92018 0.82103 1.04514 1.22580 0.99586 0.95357 0.83020 1.22378 1.02216 0.93811 1.00704 1.20590 1.05378 0.98578 0.94575 1.20135 0.95528 0.88790 0.92823 1.21563 0.99452 0.91774 1.03603 1.23186 0.94631 0.97200 0.87248 1.67177 1.19288 1.26048 1.09060 1.21113 0.95492 0.90749 0.88076 1.98406 1.96754 1.97837 1.06219 1.83936 1.59021 1.31321 1.34919 0.92814 0.98691 0.99193 0.95239 0.91019 0.84284 0.91899 0.85672 0.80505 0.79819 0.76399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.64 13.29 21.45 0.28 -56.36 16 2 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 3 Si 0.97 43.57 29.54 68.60 2.03 45.60 16 4 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 5 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 6 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 7 C -0.54 -30.08 9.11 25.60 0.23 -29.85 16 8 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 9 C 0.03 1.48 5.23 29.85 0.16 1.64 16 10 C 0.08 3.26 5.62 86.30 0.49 3.74 16 11 N -0.70 -22.86 6.49 -517.90 -3.36 -26.22 16 12 C 0.14 3.33 6.19 85.56 0.53 3.86 16 13 C 0.04 1.05 6.75 24.73 0.17 1.22 16 14 C -0.17 -4.20 10.96 23.50 0.26 -3.95 16 15 C -0.19 -4.70 6.25 -20.22 -0.13 -4.83 16 16 C 0.08 1.93 7.49 23.12 0.17 2.10 16 17 C -0.14 -2.29 10.13 22.39 0.23 -2.06 16 18 C 0.13 1.91 11.14 84.53 0.94 2.85 16 19 N -0.50 -11.07 10.34 -186.11 -1.92 -12.99 16 20 C 0.21 5.24 7.32 84.93 0.62 5.86 16 21 Cl -0.02 -0.47 29.10 -2.72 -0.08 -0.55 16 22 O -0.19 -4.91 10.57 -5.63 -0.06 -4.97 16 23 H 0.26 14.97 8.31 -92.70 -0.77 14.20 16 24 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 25 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 26 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 28 H 0.34 11.40 8.72 -89.69 -0.78 10.62 16 29 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 30 H 0.13 2.63 8.14 -2.39 -0.02 2.61 16 31 H 0.18 3.87 8.06 -2.91 -0.02 3.85 16 32 H 0.18 1.62 8.06 -2.91 -0.02 1.60 16 33 H 0.22 1.23 8.06 -2.91 -0.02 1.21 16 Total: -1.00 -67.80 310.08 1.37 -66.43 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: 0.36 Total: 8.08 kcal Atomic # 6 Polarization: -23.15 SS G_CDS: 4.13 Total: -19.02 kcal Atomic # 7 Polarization: -90.57 SS G_CDS: -5.00 Total: -95.57 kcal Atomic # 8 Polarization: -4.91 SS G_CDS: -0.06 Total: -4.97 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -0.08 Total: -0.55 kcal Total: -67.80 1.37 -66.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877304304.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.266 kcal (2) G-P(sol) polarization free energy of solvation -67.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds