Wall clock time and date at job start Tue Mar 31 2020 02:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 N 1.46506 * 109.47289 * 240.00314 * 2 1 3 5 5 C 1.36937 * 119.99651 * 59.99863 * 4 2 1 6 6 H 1.07998 * 120.00557 * 0.02562 * 5 4 2 7 7 C 1.38815 * 119.99801 * 180.02562 * 5 4 2 8 8 N 1.31622 * 119.99947 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00056 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47015 * 89.99916 * 9 7 5 11 11 H 1.48499 * 109.47052 * 210.00002 * 9 7 5 12 12 H 1.48499 * 109.47264 * 329.99485 * 9 7 5 13 13 C 1.50697 * 109.47466 * 120.00132 * 2 1 3 14 14 N 1.29910 * 124.85288 * 64.69332 * 13 2 1 15 15 C 1.36065 * 108.79994 * 179.89764 * 14 13 2 16 16 C 1.39592 * 133.78811 * 180.02562 * 15 14 13 17 17 C 1.37784 * 119.71503 * 180.31145 * 16 15 14 18 18 Cl 1.73605 * 119.80059 * 179.97438 * 17 16 15 19 19 C 1.38814 * 120.39745 * 359.97438 * 17 16 15 20 20 C 1.37897 * 120.46709 * 359.97438 * 19 17 16 21 21 C 1.38681 * 119.88741 * 0.02562 * 20 19 17 22 22 O 1.34230 * 124.85829 * 244.99960 * 13 2 1 23 23 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 26 26 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 27 27 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 29 29 H 0.96992 * 119.99944 * 239.99927 * 4 2 1 30 30 H 0.97001 * 120.00212 * 180.02562 * 8 7 5 31 31 H 1.07992 * 120.13903 * 0.28613 * 16 15 14 32 32 H 1.08008 * 119.76993 * 180.02562 * 19 17 16 33 33 H 1.08000 * 120.06027 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 1.6875 -0.2226 -2.4399 6 1 1.0669 0.6557 -2.5390 7 6 2.1498 -0.8772 -3.5734 8 7 2.9066 -1.9473 -3.4527 9 14 1.6979 -0.2393 -5.2699 10 1 2.7214 0.7381 -5.7201 11 1 1.6422 -1.3738 -6.2266 12 1 0.3709 0.4247 -5.2119 13 6 2.0324 -0.7104 1.2304 14 7 1.8503 -1.9710 1.4862 15 6 2.4398 -2.2665 2.6764 16 6 2.5608 -3.4349 3.4306 17 6 3.2332 -3.4051 4.6329 18 17 3.3845 -4.8566 5.5731 19 6 3.7904 -2.2213 5.0969 20 6 3.6790 -1.0605 4.3610 21 6 3.0055 -1.0727 3.1488 22 8 2.7270 -0.1300 2.2215 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8899 29 1 2.5760 -1.4792 -1.1073 30 1 3.2299 -2.4046 -4.2447 31 1 2.1289 -4.3580 3.0735 32 1 4.3158 -2.2096 6.0405 33 1 4.1153 -0.1433 4.7280 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879157146.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:06:21 Heat of formation + Delta-G solvation = 43.817170 kcal Electronic energy + Delta-G solvation = -19175.188657 eV Core-core repulsion = 16035.775957 eV Total energy + Delta-G solvation = -3139.412700 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.15851 -38.42764 -36.79182 -36.32120 -34.43777 -32.44541 -30.68812 -29.51254 -28.75297 -26.67168 -24.72346 -23.46913 -22.83185 -21.92131 -19.58344 -17.99103 -17.44115 -17.10944 -16.63711 -15.97033 -15.03377 -14.39535 -14.27307 -14.02398 -13.66224 -13.35734 -12.98961 -12.78398 -12.76191 -11.81168 -11.71832 -11.61488 -11.58817 -11.33023 -11.17834 -11.04611 -10.93391 -10.81430 -10.70777 -10.24355 -10.10545 -9.72037 -9.04460 -8.72875 -8.47557 -7.12814 -5.83445 -3.16279 0.61553 0.96221 1.86779 2.51096 2.60545 3.40175 3.44792 3.47252 3.47884 3.97061 4.43048 4.52175 4.79521 4.89750 4.98384 5.24684 5.41090 5.44915 5.54268 5.61498 5.82851 5.90538 5.94991 6.08862 6.15207 6.17947 6.35872 6.41661 6.44323 6.51031 6.79179 6.93273 7.60981 7.83727 8.30490 9.43690 9.91536 10.29365 11.38395 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.028533 B = 0.004069 C = 0.003762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.080342 B = 6880.418087 C = 7441.529043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.286 3.714 3 C -0.158 4.158 4 N -0.709 5.709 5 C -0.243 4.243 6 H 0.077 0.923 7 C -0.006 4.006 8 N -0.926 5.926 9 Si 0.910 3.090 10 H -0.289 1.289 11 H -0.291 1.291 12 H -0.280 1.280 13 C 0.287 3.713 14 N -0.467 5.467 15 C 0.041 3.959 16 C -0.053 4.053 17 C -0.039 4.039 18 Cl -0.063 7.063 19 C -0.097 4.097 20 C -0.075 4.075 21 C 0.002 3.998 22 O -0.206 6.206 23 H 0.042 0.958 24 H 0.065 0.935 25 H 0.076 0.924 26 H 0.047 0.953 27 H 0.058 0.942 28 H 0.075 0.925 29 H 0.391 0.609 30 H 0.257 0.743 31 H 0.146 0.854 32 H 0.147 0.853 33 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.283 1.200 17.745 17.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.194 3.806 3 C -0.217 4.217 4 N -0.353 5.353 5 C -0.373 4.373 6 H 0.095 0.905 7 C -0.203 4.203 8 N -0.573 5.573 9 Si 0.741 3.259 10 H -0.216 1.216 11 H -0.217 1.217 12 H -0.205 1.205 13 C 0.075 3.925 14 N -0.195 5.195 15 C -0.072 4.072 16 C -0.073 4.073 17 C -0.067 4.067 18 Cl -0.034 7.034 19 C -0.116 4.116 20 C -0.094 4.094 21 C -0.050 4.050 22 O -0.097 6.097 23 H 0.061 0.939 24 H 0.084 0.916 25 H 0.095 0.905 26 H 0.066 0.934 27 H 0.077 0.923 28 H 0.094 0.906 29 H 0.227 0.773 30 H 0.067 0.933 31 H 0.163 0.837 32 H 0.165 0.835 33 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -0.080 0.702 17.284 17.299 hybrid contribution 0.434 0.264 -0.453 0.681 sum 0.355 0.966 16.831 16.863 Atomic orbital electron populations 1.22295 0.94465 1.02891 1.01296 1.18269 0.93095 0.90275 0.78986 1.22315 1.01827 0.95992 1.01610 1.42392 1.61057 1.33046 0.98806 1.19094 1.26755 1.09190 0.82280 0.90516 1.24778 1.00021 0.97600 0.97906 1.69693 1.38488 1.20437 1.28652 0.86155 0.78005 0.77656 0.84101 1.21597 1.21701 1.20544 1.27308 0.87763 0.87314 0.90125 1.70788 1.22739 1.13149 1.12848 1.19826 0.99799 0.94242 0.93287 1.20050 0.98270 0.97225 0.91745 1.20471 1.03443 0.88582 0.94178 1.98370 1.96862 1.36277 1.71892 1.20754 1.00476 0.89838 1.00536 1.19732 0.99754 0.99414 0.90466 1.20441 1.02732 0.88308 0.93478 1.84576 1.59960 1.37671 1.27517 0.93865 0.91624 0.90477 0.93391 0.92325 0.90621 0.77330 0.93286 0.83657 0.83517 0.83913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 8.42 37.16 0.31 -2.39 16 2 C 0.29 5.73 1.11 -132.97 -0.15 5.58 16 3 C -0.16 -2.78 7.95 37.16 0.30 -2.48 16 4 N -0.71 -17.53 5.13 -48.31 -0.25 -17.78 16 5 C -0.24 -6.39 8.67 -15.06 -0.13 -6.52 16 6 H 0.08 1.90 6.69 -52.49 -0.35 1.55 16 7 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 8 N -0.93 -27.62 13.06 55.49 0.72 -26.89 16 9 Si 0.91 21.68 29.55 -169.99 -5.02 16.66 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 13 C 0.29 5.60 6.50 -13.09 -0.09 5.51 16 14 N -0.47 -9.44 11.34 -8.70 -0.10 -9.54 16 15 C 0.04 0.71 7.24 -84.71 -0.61 0.10 16 16 C -0.05 -0.77 9.87 -39.24 -0.39 -1.16 16 17 C -0.04 -0.46 6.31 -39.53 -0.25 -0.71 16 18 Cl -0.06 -0.66 28.94 -51.86 -1.50 -2.16 16 19 C -0.10 -1.01 9.80 -39.49 -0.39 -1.40 16 20 C -0.07 -0.88 10.06 -39.54 -0.40 -1.28 16 21 C 0.00 0.03 7.43 -38.64 -0.29 -0.26 16 22 O -0.21 -3.64 10.12 3.57 0.04 -3.61 16 23 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 24 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 25 H 0.08 1.39 7.27 -51.93 -0.38 1.01 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.07 1.34 7.27 -51.93 -0.38 0.96 16 29 H 0.39 10.74 7.66 -40.82 -0.31 10.43 16 30 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 31 H 0.15 1.95 8.06 -52.49 -0.42 1.53 16 32 H 0.15 1.07 8.06 -52.48 -0.42 0.65 16 33 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 302.26 15.07 4.56 4.56 Total: -1.00 -29.85 302.26 -7.24 -37.09 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -3.51 Total: 6.95 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: -2.17 Total: -5.28 kcal Atomic # 7 Polarization: -54.59 SS G_CDS: 0.38 Total: -54.21 kcal Atomic # 8 Polarization: -3.64 SS G_CDS: 0.04 Total: -3.61 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -1.50 Total: -2.16 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.85 -7.24 -37.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879157146.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.911 kcal (2) G-P(sol) polarization free energy of solvation -29.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds