Wall clock time and date at job start Tue Mar 31 2020 02:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 N 1.46506 * 109.47289 * 240.00314 * 2 1 3 5 5 C 1.36937 * 119.99651 * 59.99863 * 4 2 1 6 6 H 1.07998 * 120.00557 * 0.02562 * 5 4 2 7 7 C 1.38815 * 119.99801 * 180.02562 * 5 4 2 8 8 N 1.31622 * 119.99947 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00056 * 179.97438 * 7 5 4 10 10 H 1.48505 * 109.47015 * 89.99916 * 9 7 5 11 11 H 1.48499 * 109.47052 * 210.00002 * 9 7 5 12 12 H 1.48499 * 109.47264 * 329.99485 * 9 7 5 13 13 C 1.50697 * 109.47466 * 120.00132 * 2 1 3 14 14 N 1.29910 * 124.85288 * 64.69332 * 13 2 1 15 15 C 1.36065 * 108.79994 * 179.89764 * 14 13 2 16 16 C 1.39592 * 133.78811 * 180.02562 * 15 14 13 17 17 C 1.37784 * 119.71503 * 180.31145 * 16 15 14 18 18 Cl 1.73605 * 119.80059 * 179.97438 * 17 16 15 19 19 C 1.38814 * 120.39745 * 359.97438 * 17 16 15 20 20 C 1.37897 * 120.46709 * 359.97438 * 19 17 16 21 21 C 1.38681 * 119.88741 * 0.02562 * 20 19 17 22 22 O 1.34230 * 124.85829 * 244.99960 * 13 2 1 23 23 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 26 26 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 27 27 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 29 29 H 0.96992 * 119.99944 * 239.99927 * 4 2 1 30 30 H 0.97001 * 120.00212 * 180.02562 * 8 7 5 31 31 H 1.07992 * 120.13903 * 0.28613 * 16 15 14 32 32 H 1.08008 * 119.76993 * 180.02562 * 19 17 16 33 33 H 1.08000 * 120.06027 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 1.6875 -0.2226 -2.4399 6 1 1.0669 0.6557 -2.5390 7 6 2.1498 -0.8772 -3.5734 8 7 2.9066 -1.9473 -3.4527 9 14 1.6979 -0.2393 -5.2699 10 1 2.7214 0.7381 -5.7201 11 1 1.6422 -1.3738 -6.2266 12 1 0.3709 0.4247 -5.2119 13 6 2.0324 -0.7104 1.2304 14 7 1.8503 -1.9710 1.4862 15 6 2.4398 -2.2665 2.6764 16 6 2.5608 -3.4349 3.4306 17 6 3.2332 -3.4051 4.6329 18 17 3.3845 -4.8566 5.5731 19 6 3.7904 -2.2213 5.0969 20 6 3.6790 -1.0605 4.3610 21 6 3.0055 -1.0727 3.1488 22 8 2.7270 -0.1300 2.2215 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8899 29 1 2.5760 -1.4792 -1.1073 30 1 3.2299 -2.4046 -4.2447 31 1 2.1289 -4.3580 3.0735 32 1 4.3158 -2.2096 6.0405 33 1 4.1153 -0.1433 4.7280 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879157146.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:06:21 Heat of formation + Delta-G solvation = 23.286253 kcal Electronic energy + Delta-G solvation = -19176.078945 eV Core-core repulsion = 16035.775957 eV Total energy + Delta-G solvation = -3140.302988 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -44.42430 -39.51556 -38.30256 -37.35346 -35.75823 -34.35412 -31.74730 -31.07437 -30.24560 -28.11416 -26.42627 -24.93800 -24.04964 -23.13243 -21.08067 -19.28503 -19.09892 -18.40486 -17.97640 -17.32333 -16.55656 -15.89257 -15.53335 -15.29121 -15.23148 -14.56952 -14.42048 -14.27231 -13.81732 -13.36240 -13.10903 -12.94048 -12.89212 -12.78395 -12.74749 -12.54876 -12.31439 -12.16213 -12.10246 -11.96189 -11.64613 -11.53091 -11.00285 -9.78024 -9.65563 -9.12189 -7.92467 -5.25280 -0.51030 -0.11458 0.89996 1.22654 1.34840 1.51839 1.53166 1.61338 2.36301 2.58282 2.69717 3.33189 3.41705 3.71881 3.77573 3.83672 4.00906 4.11562 4.14247 4.31669 4.49383 4.77541 4.81737 4.90743 4.93632 4.96037 4.96409 5.02680 5.04719 5.30496 5.33334 5.47331 5.55968 6.23171 6.51251 7.31496 7.95057 8.23291 9.31401 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.028533 B = 0.004069 C = 0.003762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.080342 B = 6880.418087 C = 7441.529043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.278 3.722 3 C -0.147 4.147 4 N -0.725 5.725 5 C -0.229 4.229 6 H 0.094 0.906 7 C -0.075 4.075 8 N -0.973 5.973 9 Si 0.976 3.024 10 H -0.287 1.287 11 H -0.302 1.302 12 H -0.262 1.262 13 C 0.267 3.733 14 N -0.499 5.499 15 C 0.003 3.997 16 C -0.069 4.069 17 C -0.033 4.033 18 Cl -0.044 7.044 19 C -0.075 4.075 20 C -0.067 4.067 21 C -0.014 4.014 22 O -0.208 6.208 23 H 0.074 0.926 24 H 0.044 0.956 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.046 0.954 28 H 0.074 0.926 29 H 0.372 0.628 30 H 0.249 0.751 31 H 0.143 0.857 32 H 0.191 0.809 33 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.403 2.617 20.231 20.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.187 3.813 3 C -0.207 4.207 4 N -0.367 5.367 5 C -0.360 4.360 6 H 0.112 0.888 7 C -0.267 4.267 8 N -0.623 5.623 9 Si 0.805 3.195 10 H -0.214 1.214 11 H -0.229 1.229 12 H -0.186 1.186 13 C 0.055 3.945 14 N -0.228 5.228 15 C -0.109 4.109 16 C -0.088 4.088 17 C -0.061 4.061 18 Cl -0.015 7.015 19 C -0.093 4.093 20 C -0.086 4.086 21 C -0.064 4.064 22 O -0.099 6.099 23 H 0.093 0.907 24 H 0.063 0.937 25 H 0.096 0.904 26 H 0.098 0.902 27 H 0.065 0.935 28 H 0.093 0.907 29 H 0.204 0.796 30 H 0.058 0.942 31 H 0.161 0.839 32 H 0.208 0.792 33 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 0.008 2.168 19.821 19.939 hybrid contribution 0.435 -0.276 -0.935 1.067 sum 0.443 1.893 18.886 18.986 Atomic orbital electron populations 1.22175 0.92972 1.02019 1.02823 1.18513 0.94024 0.91006 0.77769 1.22194 1.01011 0.94343 1.03121 1.42576 1.61016 1.32876 1.00194 1.19557 1.24900 1.08586 0.82951 0.88834 1.25620 1.01048 0.98303 1.01722 1.69877 1.41005 1.22508 1.28955 0.85103 0.78404 0.76605 0.79411 1.21374 1.22920 1.18635 1.26976 0.89318 0.87419 0.90769 1.70667 1.23651 1.13864 1.14600 1.20124 1.01489 0.96025 0.93222 1.20175 0.99393 0.96502 0.92773 1.20653 1.02139 0.89982 0.93304 1.98385 1.96653 1.35426 1.71042 1.21300 0.98436 0.88316 1.01288 1.20271 0.98337 1.01395 0.88573 1.21006 1.03564 0.87366 0.94490 1.84512 1.59857 1.37930 1.27557 0.90684 0.93709 0.90445 0.90170 0.93530 0.90681 0.79587 0.94177 0.83878 0.79185 0.80254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.02 8.42 71.98 0.61 -4.41 16 2 C 0.28 11.15 1.11 2.85 0.00 11.16 16 3 C -0.15 -5.03 7.95 71.98 0.57 -4.46 16 4 N -0.72 -36.84 5.13 -306.74 -1.57 -38.41 16 5 C -0.23 -12.17 8.67 84.03 0.73 -11.44 16 6 H 0.09 4.54 6.69 -2.91 -0.02 4.53 16 7 C -0.07 -4.24 5.50 84.86 0.47 -3.77 16 8 N -0.97 -60.36 13.06 21.65 0.28 -60.08 16 9 Si 0.98 45.26 29.55 68.60 2.03 47.29 16 10 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 11 H -0.30 -14.43 7.11 99.48 0.71 -13.73 16 12 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 13 C 0.27 10.62 6.50 88.39 0.57 11.20 16 14 N -0.50 -20.93 11.34 -296.27 -3.36 -24.29 16 15 C 0.00 0.11 7.24 39.32 0.28 0.40 16 16 C -0.07 -1.97 9.87 22.49 0.22 -1.75 16 17 C -0.03 -0.71 6.31 22.30 0.14 -0.57 16 18 Cl -0.04 -0.81 28.94 -2.72 -0.08 -0.89 16 19 C -0.08 -1.27 9.80 22.33 0.22 -1.05 16 20 C -0.07 -1.36 10.06 22.29 0.22 -1.13 16 21 C -0.01 -0.42 7.43 22.88 0.17 -0.25 16 22 O -0.21 -7.25 10.12 -10.14 -0.10 -7.35 16 23 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 24 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 25 H 0.08 2.71 7.27 -2.38 -0.02 2.70 16 26 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 27 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.07 2.54 7.27 -2.39 -0.02 2.52 16 29 H 0.37 21.46 7.66 -92.71 -0.71 20.75 16 30 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 31 H 0.14 3.98 8.06 -2.91 -0.02 3.95 16 32 H 0.19 1.61 8.06 -2.91 -0.02 1.59 16 33 H 0.18 2.29 8.06 -2.91 -0.02 2.27 16 Total: -1.00 -67.88 302.26 1.85 -66.03 By element: Atomic # 1 Polarization: 23.34 SS G_CDS: 0.44 Total: 23.78 kcal Atomic # 6 Polarization: -10.28 SS G_CDS: 4.21 Total: -6.07 kcal Atomic # 7 Polarization: -118.13 SS G_CDS: -4.65 Total: -122.78 kcal Atomic # 8 Polarization: -7.25 SS G_CDS: -0.10 Total: -7.35 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -0.08 Total: -0.89 kcal Total: -67.88 1.85 -66.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879157146.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.320 kcal (2) G-P(sol) polarization free energy of solvation -67.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds