Wall clock time and date at job start Tue Mar 31 2020 02:03:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38353 * 120.32880 * 2 1 4 4 N 1.31918 * 121.10625 * 180.28724 * 3 2 1 5 5 C 1.31828 * 121.86071 * 359.74297 * 4 3 2 6 6 Cl 1.73592 * 119.74083 * 179.97438 * 5 4 3 7 7 C 1.39714 * 120.52221 * 359.97438 * 5 4 3 8 8 C 1.47754 * 120.56701 * 180.02562 * 7 5 4 9 9 O 1.21559 * 120.00091 * 352.51134 * 8 7 5 10 10 N 1.34775 * 119.99882 * 172.50604 * 8 7 5 11 11 C 1.47067 * 136.05873 * 2.72647 * 10 8 7 12 12 C 1.53235 * 88.08636 * 207.20702 * 11 10 8 13 13 C 1.50707 * 114.32931 * 220.47373 * 12 11 10 14 14 H 1.07993 * 119.99987 * 93.75355 * 13 12 11 15 15 C 1.37871 * 119.99641 * 273.76010 * 13 12 11 16 16 N 1.31524 * 120.00242 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99912 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47219 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47290 * 119.99943 * 17 15 13 20 20 H 1.48501 * 109.47138 * 239.99820 * 17 15 13 21 21 C 1.47072 * 136.05941 * 183.10185 * 10 8 7 22 22 C 1.38345 * 120.32899 * 179.75168 * 2 1 3 23 23 H 1.08996 * 109.47012 * 270.25149 * 1 2 3 24 24 H 1.09008 * 109.47066 * 30.24561 * 1 2 3 25 25 H 1.09000 * 109.47553 * 150.24663 * 1 2 3 26 26 H 1.07999 * 119.44980 * 0.02562 * 3 2 1 27 27 H 1.09005 * 113.47051 * 321.93845 * 11 10 8 28 28 H 1.09004 * 113.46768 * 92.37827 * 11 10 8 29 29 H 1.08999 * 114.02034 * 87.71871 * 12 11 10 30 30 H 0.97000 * 119.99579 * 180.02562 * 16 15 13 31 31 H 1.08998 * 113.46688 * 267.62727 * 21 10 8 32 32 H 1.09001 * 113.46605 * 38.05926 * 21 10 8 33 33 H 1.08002 * 120.84835 * 0.02562 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2056 1.1942 0.0000 4 7 3.5247 1.2121 -0.0057 5 6 4.2357 0.1020 -0.0065 6 17 5.9693 0.1897 -0.0148 7 6 3.6049 -1.1447 -0.0009 8 6 4.4008 -2.3895 -0.0013 9 8 5.6070 -2.3397 -0.1437 10 7 3.7895 -3.5802 0.1564 11 6 2.4026 -4.0476 0.3014 12 6 2.9437 -5.2501 1.0819 13 6 2.2650 -6.5564 0.7589 14 1 2.6825 -7.2105 0.0079 15 6 1.1110 -6.9161 1.4221 16 7 0.6028 -6.1195 2.3370 17 14 0.2693 -8.5348 1.0212 18 1 1.0348 -9.2422 -0.0365 19 1 0.2138 -9.3794 2.2415 20 1 -1.1102 -8.2695 0.5398 21 6 4.2161 -4.9834 0.2659 22 6 2.2056 -1.1941 0.0052 23 1 -0.3633 0.0045 1.0276 24 1 -0.3633 0.8878 -0.5177 25 1 -0.3634 -0.8922 -0.5100 26 1 1.6620 2.1274 0.0004 27 1 1.7818 -3.3846 0.9040 28 1 1.9349 -4.3192 -0.6450 29 1 3.0532 -5.0719 2.1517 30 1 -0.2089 -6.3729 2.8038 31 1 4.2365 -5.5068 -0.6900 32 1 5.1344 -5.1145 0.8384 33 1 1.6849 -2.1403 0.0089 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880670361.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:03:19 Heat of formation + Delta-G solvation = 23.768348 kcal Electronic energy + Delta-G solvation = -19203.479948 eV Core-core repulsion = 16063.197865 eV Total energy + Delta-G solvation = -3140.282083 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.072 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.93355 -40.66589 -38.76587 -37.65951 -34.83991 -34.56091 -33.47185 -30.78787 -28.20679 -27.30147 -26.92598 -25.45349 -23.62513 -22.10108 -20.21508 -18.81576 -18.39799 -18.23537 -17.81909 -16.80282 -16.58451 -16.27030 -15.80149 -15.07209 -14.94403 -14.59050 -14.32261 -13.99004 -13.86795 -13.59178 -13.31122 -13.19389 -12.99599 -12.76836 -12.58064 -12.52904 -12.30148 -12.12386 -11.41713 -11.15056 -11.09542 -10.99254 -10.60672 -10.35069 -9.95432 -9.56433 -8.15936 -6.26601 -0.62286 -0.12382 0.72765 1.47692 1.52491 1.61908 1.70530 1.81457 2.47148 2.53590 3.12081 3.18721 3.44942 3.53280 3.73177 3.92243 4.01206 4.21785 4.36323 4.52225 4.59033 4.61416 4.73011 4.73867 4.85967 4.90291 5.00982 5.09845 5.17573 5.44385 5.59944 5.82202 6.22716 6.45148 6.76266 6.82376 7.03283 7.43649 8.94143 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.021945 B = 0.004977 C = 0.004166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.628778 B = 5624.588333 C = 6720.234250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.128 4.128 3 C 0.140 3.860 4 N -0.494 5.494 5 C 0.194 3.806 6 Cl -0.013 7.013 7 C -0.175 4.175 8 C 0.569 3.431 9 O -0.562 6.562 10 N -0.639 5.639 11 C 0.103 3.897 12 C 0.024 3.976 13 C -0.526 4.526 14 H 0.067 0.933 15 C 0.026 3.974 16 N -0.916 5.916 17 Si 0.956 3.044 18 H -0.266 1.266 19 H -0.286 1.286 20 H -0.278 1.278 21 C 0.109 3.891 22 C -0.054 4.054 23 H 0.089 0.911 24 H 0.103 0.897 25 H 0.075 0.925 26 H 0.213 0.787 27 H 0.072 0.928 28 H 0.091 0.909 29 H 0.040 0.960 30 H 0.265 0.735 31 H 0.088 0.912 32 H 0.058 0.942 33 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.629 12.224 -4.827 13.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.130 4.130 3 C -0.018 4.018 4 N -0.205 5.205 5 C 0.030 3.970 6 Cl 0.016 6.984 7 C -0.181 4.181 8 C 0.359 3.641 9 O -0.443 6.443 10 N -0.372 5.372 11 C -0.018 4.018 12 C 0.005 3.995 13 C -0.564 4.564 14 H 0.085 0.915 15 C -0.175 4.175 16 N -0.554 5.554 17 Si 0.782 3.218 18 H -0.190 1.190 19 H -0.212 1.212 20 H -0.204 1.204 21 C -0.013 4.013 22 C -0.080 4.080 23 H 0.107 0.893 24 H 0.122 0.878 25 H 0.094 0.906 26 H 0.230 0.770 27 H 0.090 0.910 28 H 0.109 0.891 29 H 0.058 0.942 30 H 0.074 0.926 31 H 0.106 0.894 32 H 0.077 0.923 33 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -2.419 13.266 -4.818 14.320 hybrid contribution -0.339 -1.662 0.098 1.699 sum -2.758 11.604 -4.720 12.827 Atomic orbital electron populations 1.20881 0.86186 1.05201 1.04327 1.21412 1.00255 0.92357 0.99013 1.23588 0.87234 0.99917 0.91016 1.67212 1.09839 1.28926 1.14515 1.21779 0.88478 0.89007 0.97774 1.98420 1.05708 1.98405 1.95848 1.20551 0.95427 0.92900 1.09265 1.17804 0.86719 0.82457 0.77154 1.90779 1.14724 1.86764 1.52061 1.49841 1.12422 1.05459 1.69434 1.23599 0.82327 0.95379 1.00540 1.20190 0.91093 0.93816 0.94418 1.21198 1.09117 1.04041 1.22026 0.91488 1.25692 0.97744 0.99823 0.94235 1.70052 1.21766 1.38347 1.25250 0.85539 0.78444 0.79838 0.78023 1.18992 1.21215 1.20400 1.23296 0.99600 0.77964 1.00471 1.22662 0.91355 1.01823 0.92142 0.89270 0.87813 0.90577 0.77011 0.90961 0.89146 0.94177 0.92579 0.89402 0.92306 0.81792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.41 10.03 71.24 0.71 -0.70 16 2 C -0.13 -2.67 5.89 -19.81 -0.12 -2.78 16 3 C 0.14 2.84 10.85 84.71 0.92 3.76 16 4 N -0.49 -14.08 10.33 -185.59 -1.92 -15.99 16 5 C 0.19 6.53 7.31 85.05 0.62 7.15 16 6 Cl -0.01 -0.44 26.23 -2.72 -0.07 -0.51 16 7 C -0.18 -6.06 5.89 -19.97 -0.12 -6.18 16 8 C 0.57 23.05 7.99 86.76 0.69 23.75 16 9 O -0.56 -25.31 14.83 -3.90 -0.06 -25.37 16 10 N -0.64 -25.43 3.69 -862.40 -3.18 -28.61 16 11 C 0.10 3.99 6.10 83.09 0.51 4.50 16 12 C 0.02 1.09 3.77 -11.29 -0.04 1.04 16 13 C -0.53 -25.36 8.83 25.60 0.23 -25.13 16 14 H 0.07 3.15 7.81 -2.91 -0.02 3.13 16 15 C 0.03 1.26 5.46 84.65 0.46 1.72 16 16 N -0.92 -47.53 13.26 21.45 0.28 -47.25 16 17 Si 0.96 39.02 29.54 68.60 2.03 41.04 16 18 H -0.27 -10.53 7.11 99.48 0.71 -9.83 16 19 H -0.29 -11.78 7.11 99.48 0.71 -11.07 16 20 H -0.28 -11.10 7.11 99.48 0.71 -10.39 16 21 C 0.11 4.39 8.19 83.17 0.68 5.07 16 22 C -0.05 -1.53 8.96 22.73 0.20 -1.33 16 23 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.10 0.75 8.09 -2.38 -0.02 0.73 16 25 H 0.08 1.04 8.09 -2.39 -0.02 1.02 16 26 H 0.21 2.24 8.06 -2.91 -0.02 2.22 16 27 H 0.07 2.70 6.14 -2.38 -0.01 2.69 16 28 H 0.09 3.31 8.10 -2.39 -0.02 3.29 16 29 H 0.04 2.03 8.11 -2.39 -0.02 2.01 16 30 H 0.27 13.08 8.31 -92.71 -0.77 12.31 16 31 H 0.09 3.33 8.10 -2.39 -0.02 3.31 16 32 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 33 H 0.17 4.63 4.00 -2.91 -0.01 4.62 16 Total: -1.00 -61.37 299.55 2.98 -58.40 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: 1.14 Total: 7.43 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: 4.75 Total: 10.87 kcal Atomic # 7 Polarization: -87.04 SS G_CDS: -4.81 Total: -91.85 kcal Atomic # 8 Polarization: -25.31 SS G_CDS: -0.06 Total: -25.37 kcal Atomic # 14 Polarization: 39.02 SS G_CDS: 2.03 Total: 41.04 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -0.07 Total: -0.51 kcal Total: -61.37 2.98 -58.40 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880670361.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.164 kcal (2) G-P(sol) polarization free energy of solvation -61.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds