Wall clock time and date at job start Tue Mar 31 2020 02:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47080 * 349.35866 * 3 2 1 5 5 C 1.36870 * 120.00316 * 280.33121 * 4 3 2 6 6 H 1.08000 * 119.99949 * 39.56680 * 5 4 3 7 7 C 1.39053 * 120.00205 * 219.57129 * 5 4 3 8 8 N 1.31362 * 119.99850 * 19.77522 * 7 5 4 9 9 Si 1.86804 * 119.99942 * 199.77954 * 7 5 4 10 10 H 1.48492 * 109.47191 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.46768 * 119.99873 * 9 7 5 12 12 H 1.48497 * 109.46950 * 239.99674 * 9 7 5 13 13 C 1.34778 * 119.99853 * 100.32787 * 4 3 2 14 14 O 1.21591 * 119.99902 * 187.37207 * 13 4 3 15 15 C 1.47724 * 120.00076 * 7.36985 * 13 4 3 16 16 C 1.40085 * 120.56419 * 330.23867 * 15 13 4 17 17 C 1.38336 * 118.28348 * 180.02562 * 16 15 13 18 18 C 1.38376 * 119.30799 * 0.28085 * 17 16 15 19 19 N 1.31933 * 121.09412 * 359.40255 * 18 17 16 20 20 C 1.31687 * 121.88146 * 0.63030 * 19 18 17 21 21 C 1.50706 * 119.71684 * 179.68044 * 20 19 18 22 22 F 1.39908 * 109.46743 * 119.98085 * 21 20 19 23 23 F 1.39897 * 109.47107 * 239.97861 * 21 20 19 24 24 H 4.40638 * 5.51322 * 179.97438 * 4 1 2 25 25 H 1.08999 * 109.46913 * 229.36077 * 3 2 1 26 26 H 1.09003 * 109.47003 * 109.35839 * 3 2 1 27 27 H 0.96996 * 119.99745 * 184.89007 * 8 7 5 28 28 H 1.07997 * 120.86106 * 0.02562 * 16 15 13 29 29 H 1.07998 * 120.34405 * 180.02562 * 17 16 15 30 30 H 1.08000 * 119.45000 * 179.69432 * 18 17 16 31 31 H 1.08993 * 109.47299 * 359.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.3566 0.2551 5 6 3.1629 -1.8450 1.5333 6 1 2.3520 -1.6270 2.2126 7 6 4.2353 -2.6220 1.9575 8 7 5.3768 -2.5758 1.3091 9 14 4.0525 -3.7315 3.4492 10 1 2.6785 -3.6018 3.9972 11 1 4.2960 -5.1410 3.0504 12 1 5.0381 -3.3331 4.4860 13 6 3.5572 -2.1243 -0.7691 14 8 3.8359 -3.2924 -0.5786 15 6 3.6813 -1.5466 -2.1230 16 6 2.8468 -0.4972 -2.5290 17 6 3.0034 0.0078 -3.8073 18 6 3.9660 -0.5382 -4.6381 19 7 4.7422 -1.5225 -4.2267 20 6 4.6318 -2.0374 -3.0198 21 6 5.5395 -3.1660 -2.6031 22 9 6.2908 -2.7734 -1.4901 23 9 4.7694 -4.2867 -2.2742 24 1 -1.0498 -0.0003 0.0003 25 1 3.0090 0.6701 0.7798 26 1 3.0092 0.3415 -0.9696 27 1 6.1017 -3.1691 1.5607 28 1 2.1004 -0.0929 -1.8613 29 1 2.3782 0.8169 -4.1547 30 1 4.0869 -0.1491 -5.6383 31 1 6.2106 -3.4150 -3.4251 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890402060.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:11:04 Heat of formation + Delta-G solvation = 13.941912 kcal Electronic energy + Delta-G solvation = -22518.956052 eV Core-core repulsion = 18826.451183 eV Total energy + Delta-G solvation = -3692.504869 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.076 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -47.89133 -45.87484 -40.26611 -38.07504 -35.11220 -33.07550 -32.29171 -31.64628 -30.98338 -26.82764 -26.42867 -24.92715 -23.30271 -22.07901 -19.96074 -18.06578 -17.36539 -17.02220 -16.77090 -16.17561 -16.04704 -15.54031 -14.94673 -14.62419 -14.30038 -13.97914 -13.69656 -13.47909 -13.18069 -12.70410 -12.50907 -12.20093 -11.97454 -11.55108 -11.48213 -11.24163 -10.91889 -10.73684 -10.58512 -10.29505 -10.09811 -9.95915 -9.46341 -9.26792 -8.88997 -8.81607 -8.16538 -7.32432 -6.17402 -3.90694 1.03375 1.30855 3.12352 3.18558 3.30950 3.42431 3.43287 3.67783 3.96271 4.20583 4.48061 4.68947 4.74876 4.91660 4.92599 5.02912 5.17294 5.30645 5.44579 5.55538 5.73958 5.80114 5.88202 5.95943 6.20763 6.26064 6.27489 6.35222 6.72418 7.55165 7.96949 7.99782 8.13560 8.88968 9.03693 9.49823 10.11197 10.87970 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.016196 B = 0.009606 C = 0.006576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.418019 B = 2914.109845 C = 4256.848101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.179 4.179 3 C 0.166 3.834 4 N -0.430 5.430 5 C -0.343 4.343 6 H 0.083 0.917 7 C 0.070 3.930 8 N -0.804 5.804 9 Si 0.910 3.090 10 H -0.272 1.272 11 H -0.279 1.279 12 H -0.285 1.285 13 C 0.501 3.499 14 O -0.502 6.502 15 C -0.106 4.106 16 C -0.096 4.096 17 C -0.162 4.162 18 C 0.089 3.911 19 N -0.467 5.467 20 C 0.083 3.917 21 C 0.334 3.666 22 F -0.170 7.170 23 F -0.174 7.174 24 H 0.213 0.787 25 H 0.091 0.909 26 H 0.108 0.892 27 H 0.269 0.731 28 H 0.166 0.834 29 H 0.138 0.862 30 H 0.159 0.841 31 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.333 6.469 -9.020 11.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.180 4.180 3 C 0.043 3.957 4 N -0.150 5.150 5 C -0.469 4.469 6 H 0.101 0.899 7 C -0.143 4.143 8 N -0.436 5.436 9 Si 0.737 3.263 10 H -0.196 1.196 11 H -0.204 1.204 12 H -0.212 1.212 13 C 0.289 3.711 14 O -0.379 6.379 15 C -0.112 4.112 16 C -0.122 4.122 17 C -0.182 4.182 18 C -0.069 4.069 19 N -0.176 5.176 20 C -0.058 4.058 21 C 0.279 3.721 22 F -0.151 7.151 23 F -0.155 7.155 24 H 0.230 0.770 25 H 0.109 0.891 26 H 0.124 0.876 27 H 0.080 0.920 28 H 0.183 0.817 29 H 0.156 0.844 30 H 0.176 0.824 31 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -2.290 5.450 -9.381 11.088 hybrid contribution -0.967 0.008 1.279 1.604 sum -3.258 5.457 -8.102 10.297 Atomic orbital electron populations 1.24783 0.95745 1.01200 1.01972 1.24000 0.95225 0.99523 0.99296 1.19550 0.83347 0.89496 1.03311 1.43107 1.56999 1.08588 1.06307 1.19067 1.04784 1.35553 0.87473 0.89909 1.25199 0.93461 0.97845 0.97765 1.69865 1.01720 1.32589 1.39422 0.86182 0.78078 0.80955 0.81106 1.19613 1.20442 1.21159 1.17477 0.85046 0.86652 0.81955 1.90739 1.49942 1.15086 1.82101 1.21486 0.95765 0.95761 0.98183 1.22777 0.99072 0.94210 0.96168 1.22168 0.99948 1.01571 0.94473 1.22700 0.91874 0.92527 0.99812 1.67211 1.24856 1.10379 1.15129 1.21873 0.96113 0.97590 0.90196 1.19682 0.85520 0.80625 0.86268 1.93159 1.75699 1.90989 1.55274 1.93092 1.76839 1.51962 1.93650 0.77041 0.89065 0.87552 0.92025 0.81683 0.84372 0.82404 0.87626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.40 19.25 29.55 0.57 -2.83 16 2 C -0.18 -3.23 11.83 -37.12 -0.44 -3.66 16 3 C 0.17 3.25 5.41 -6.83 -0.04 3.21 16 4 N -0.43 -10.75 2.53 -119.06 -0.30 -11.05 16 5 C -0.34 -9.34 9.15 -15.00 -0.14 -9.48 16 6 H 0.08 2.21 7.91 -52.49 -0.42 1.79 16 7 C 0.07 1.95 4.34 -17.45 -0.08 1.88 16 8 N -0.80 -23.23 11.33 55.50 0.63 -22.60 16 9 Si 0.91 21.86 29.60 -169.99 -5.03 16.83 16 10 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 13 C 0.50 12.96 5.95 -12.38 -0.07 12.88 16 14 O -0.50 -14.68 10.32 5.29 0.05 -14.63 16 15 C -0.11 -2.27 5.59 -104.83 -0.59 -2.85 16 16 C -0.10 -1.64 7.64 -38.85 -0.30 -1.93 16 17 C -0.16 -2.15 10.10 -39.49 -0.40 -2.55 16 18 C 0.09 1.22 11.17 -17.46 -0.20 1.03 16 19 N -0.47 -8.10 10.24 -9.12 -0.09 -8.20 16 20 C 0.08 1.68 6.31 -82.15 -0.52 1.17 16 21 C 0.33 7.04 5.02 36.01 0.18 7.23 16 22 F -0.17 -4.14 15.74 2.25 0.04 -4.10 16 23 F -0.17 -4.17 14.30 2.25 0.03 -4.14 16 24 H 0.21 2.40 7.80 -54.10 -0.42 1.97 16 25 H 0.09 1.72 8.12 -51.93 -0.42 1.30 16 26 H 0.11 1.86 3.75 -54.41 -0.20 1.66 16 27 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 28 H 0.17 2.67 3.41 -52.49 -0.18 2.49 16 29 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 30 H 0.16 1.51 8.06 -52.49 -0.42 1.09 16 31 H 0.11 1.78 8.11 -51.93 -0.42 1.36 16 LS Contribution 280.66 15.07 4.23 4.23 Total: -1.00 -34.06 280.66 -4.50 -38.56 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: -2.04 Total: 1.03 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: -2.01 Total: 4.08 kcal Atomic # 7 Polarization: -42.09 SS G_CDS: 0.23 Total: -41.85 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: 0.05 Total: -14.63 kcal Atomic # 9 Polarization: -8.31 SS G_CDS: 0.07 Total: -8.24 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.03 Total: 16.83 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -34.06 -4.50 -38.56 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890402060.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.497 kcal (2) G-P(sol) polarization free energy of solvation -34.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds