Wall clock time and date at job start Tue Mar 31 2020 02:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47080 * 349.35866 * 3 2 1 5 5 C 1.36870 * 120.00316 * 280.33121 * 4 3 2 6 6 H 1.08000 * 119.99949 * 39.56680 * 5 4 3 7 7 C 1.39053 * 120.00205 * 219.57129 * 5 4 3 8 8 N 1.31362 * 119.99850 * 19.77522 * 7 5 4 9 9 Si 1.86804 * 119.99942 * 199.77954 * 7 5 4 10 10 H 1.48492 * 109.47191 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.46768 * 119.99873 * 9 7 5 12 12 H 1.48497 * 109.46950 * 239.99674 * 9 7 5 13 13 C 1.34778 * 119.99853 * 100.32787 * 4 3 2 14 14 O 1.21591 * 119.99902 * 187.37207 * 13 4 3 15 15 C 1.47724 * 120.00076 * 7.36985 * 13 4 3 16 16 C 1.40085 * 120.56419 * 330.23867 * 15 13 4 17 17 C 1.38336 * 118.28348 * 180.02562 * 16 15 13 18 18 C 1.38376 * 119.30799 * 0.28085 * 17 16 15 19 19 N 1.31933 * 121.09412 * 359.40255 * 18 17 16 20 20 C 1.31687 * 121.88146 * 0.63030 * 19 18 17 21 21 C 1.50706 * 119.71684 * 179.68044 * 20 19 18 22 22 F 1.39908 * 109.46743 * 119.98085 * 21 20 19 23 23 F 1.39897 * 109.47107 * 239.97861 * 21 20 19 24 24 H 4.40638 * 5.51322 * 179.97438 * 4 1 2 25 25 H 1.08999 * 109.46913 * 229.36077 * 3 2 1 26 26 H 1.09003 * 109.47003 * 109.35839 * 3 2 1 27 27 H 0.96996 * 119.99745 * 184.89007 * 8 7 5 28 28 H 1.07997 * 120.86106 * 0.02562 * 16 15 13 29 29 H 1.07998 * 120.34405 * 180.02562 * 17 16 15 30 30 H 1.08000 * 119.45000 * 179.69432 * 18 17 16 31 31 H 1.08993 * 109.47299 * 359.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.3566 0.2551 5 6 3.1629 -1.8450 1.5333 6 1 2.3520 -1.6270 2.2126 7 6 4.2353 -2.6220 1.9575 8 7 5.3768 -2.5758 1.3091 9 14 4.0525 -3.7315 3.4492 10 1 2.6785 -3.6018 3.9972 11 1 4.2960 -5.1410 3.0504 12 1 5.0381 -3.3331 4.4860 13 6 3.5572 -2.1243 -0.7691 14 8 3.8359 -3.2924 -0.5786 15 6 3.6813 -1.5466 -2.1230 16 6 2.8468 -0.4972 -2.5290 17 6 3.0034 0.0078 -3.8073 18 6 3.9660 -0.5382 -4.6381 19 7 4.7422 -1.5225 -4.2267 20 6 4.6318 -2.0374 -3.0198 21 6 5.5395 -3.1660 -2.6031 22 9 6.2908 -2.7734 -1.4901 23 9 4.7694 -4.2867 -2.2742 24 1 -1.0498 -0.0003 0.0003 25 1 3.0090 0.6701 0.7798 26 1 3.0092 0.3415 -0.9696 27 1 6.1017 -3.1691 1.5607 28 1 2.1004 -0.0929 -1.8613 29 1 2.3782 0.8169 -4.1547 30 1 4.0869 -0.1491 -5.6383 31 1 6.2106 -3.4150 -3.4251 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890402060.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:11:04 Heat of formation + Delta-G solvation = -9.211147 kcal Electronic energy + Delta-G solvation = -22519.960044 eV Core-core repulsion = 18826.451183 eV Total energy + Delta-G solvation = -3693.508861 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.076 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.61672 -47.63787 -41.70350 -39.75129 -36.85265 -34.84452 -33.62781 -33.14187 -32.64622 -28.45357 -27.97066 -26.65566 -24.78239 -23.59111 -21.65079 -19.49262 -18.97664 -18.49406 -18.41023 -17.89469 -17.75161 -17.07895 -16.68080 -16.08587 -15.92802 -15.67099 -15.19641 -14.90720 -14.75982 -14.38058 -14.13664 -13.98608 -13.72349 -13.43475 -13.12025 -12.84429 -12.75053 -12.66304 -12.16147 -12.13535 -11.54719 -11.31509 -10.90909 -10.72600 -10.63199 -10.24745 -10.01427 -9.30223 -8.22208 -5.99714 -0.31682 0.01352 1.36011 1.43549 1.51090 1.78280 1.88301 2.20573 2.40301 2.55224 2.73763 3.11752 3.24226 3.28517 3.52667 3.62460 3.86392 3.93965 4.01854 4.22689 4.26685 4.34457 4.38146 4.54650 4.71092 4.94938 5.03136 5.12472 5.43887 5.54084 6.10570 6.69331 6.71264 6.92582 7.10413 7.54705 8.21216 8.81983 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.016196 B = 0.009606 C = 0.006576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.418019 B = 2914.109845 C = 4256.848101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.235 4.235 3 C 0.169 3.831 4 N -0.449 5.449 5 C -0.362 4.362 6 H 0.080 0.920 7 C 0.024 3.976 8 N -0.837 5.837 9 Si 0.965 3.035 10 H -0.260 1.260 11 H -0.296 1.296 12 H -0.272 1.272 13 C 0.495 3.505 14 O -0.552 6.552 15 C -0.144 4.144 16 C -0.097 4.097 17 C -0.135 4.135 18 C 0.104 3.896 19 N -0.474 5.474 20 C 0.065 3.935 21 C 0.319 3.681 22 F -0.196 7.196 23 F -0.198 7.198 24 H 0.255 0.745 25 H 0.087 0.913 26 H 0.127 0.873 27 H 0.260 0.740 28 H 0.174 0.826 29 H 0.196 0.804 30 H 0.214 0.786 31 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.381 8.855 -11.476 15.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.236 4.236 3 C 0.048 3.952 4 N -0.169 5.169 5 C -0.488 4.488 6 H 0.097 0.903 7 C -0.185 4.185 8 N -0.470 5.470 9 Si 0.790 3.210 10 H -0.184 1.184 11 H -0.222 1.222 12 H -0.198 1.198 13 C 0.283 3.717 14 O -0.431 6.431 15 C -0.150 4.150 16 C -0.123 4.123 17 C -0.154 4.154 18 C -0.054 4.054 19 N -0.183 5.183 20 C -0.074 4.074 21 C 0.265 3.735 22 F -0.177 7.177 23 F -0.179 7.179 24 H 0.271 0.729 25 H 0.105 0.895 26 H 0.144 0.856 27 H 0.070 0.930 28 H 0.190 0.810 29 H 0.213 0.787 30 H 0.230 0.770 31 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -4.357 7.877 -11.824 14.861 hybrid contribution -0.481 -0.589 1.787 1.942 sum -4.837 7.288 -10.037 13.314 Atomic orbital electron populations 1.25733 0.96492 0.97949 0.99014 1.23819 0.95315 1.02399 1.02061 1.19547 0.84804 0.86607 1.04279 1.43272 1.57484 1.10660 1.05496 1.19192 1.04500 1.36600 0.88554 0.90277 1.25961 0.93348 0.99028 1.00114 1.69976 1.02191 1.33442 1.41433 0.85341 0.78721 0.78200 0.78705 1.18425 1.22245 1.19799 1.18229 0.83344 0.86367 0.83739 1.90680 1.51552 1.17313 1.83603 1.21231 0.98800 0.98736 0.96268 1.22916 0.98256 0.92924 0.98188 1.22761 0.99222 1.01383 0.92061 1.23753 0.89784 0.90149 1.01746 1.67290 1.25977 1.11661 1.13365 1.21657 0.96388 0.97951 0.91381 1.20299 0.86286 0.80747 0.86175 1.93093 1.76386 1.91253 1.57003 1.93026 1.77610 1.53323 1.93917 0.72855 0.89513 0.85573 0.92997 0.80973 0.78719 0.76963 0.83637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.84 19.25 74.32 1.43 -3.41 16 2 C -0.23 -8.12 11.83 31.13 0.37 -7.75 16 3 C 0.17 6.68 5.41 84.57 0.46 7.13 16 4 N -0.45 -23.23 2.53 -648.84 -1.64 -24.87 16 5 C -0.36 -20.52 9.15 84.10 0.77 -19.75 16 6 H 0.08 4.37 7.91 -2.91 -0.02 4.35 16 7 C 0.02 1.42 4.34 84.96 0.37 1.79 16 8 N -0.84 -51.18 11.33 21.68 0.25 -50.93 16 9 Si 0.97 46.88 29.60 68.60 2.03 48.91 16 10 H -0.26 -11.96 7.11 99.48 0.71 -11.26 16 11 H -0.30 -15.02 7.11 99.48 0.71 -14.31 16 12 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 13 C 0.49 26.56 5.95 86.75 0.52 27.07 16 14 O -0.55 -34.10 10.32 -4.00 -0.04 -34.14 16 15 C -0.14 -6.19 5.59 -20.00 -0.11 -6.30 16 16 C -0.10 -3.05 7.64 22.74 0.17 -2.87 16 17 C -0.14 -2.82 10.10 22.33 0.23 -2.60 16 18 C 0.10 2.28 11.17 84.71 0.95 3.22 16 19 N -0.47 -15.08 10.24 -182.77 -1.87 -16.95 16 20 C 0.06 2.62 6.31 42.91 0.27 2.90 16 21 C 0.32 13.92 5.02 71.24 0.36 14.28 16 22 F -0.20 -10.10 15.74 44.97 0.71 -9.39 16 23 F -0.20 -9.98 14.30 44.97 0.64 -9.33 16 24 H 0.26 4.43 7.80 -4.43 -0.03 4.40 16 25 H 0.09 3.36 8.12 -2.39 -0.02 3.34 16 26 H 0.13 4.32 3.75 -4.72 -0.02 4.31 16 27 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 28 H 0.17 5.13 3.41 -2.91 -0.01 5.12 16 29 H 0.20 1.95 8.06 -2.91 -0.02 1.93 16 30 H 0.21 2.38 8.06 -2.91 -0.02 2.35 16 31 H 0.15 4.94 8.11 -2.39 -0.02 4.92 16 Total: -1.00 -81.79 280.66 7.02 -74.77 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: 1.18 Total: 8.24 kcal Atomic # 6 Polarization: 7.94 SS G_CDS: 5.77 Total: 13.71 kcal Atomic # 7 Polarization: -89.49 SS G_CDS: -3.27 Total: -92.76 kcal Atomic # 8 Polarization: -34.10 SS G_CDS: -0.04 Total: -34.14 kcal Atomic # 9 Polarization: -20.07 SS G_CDS: 1.35 Total: -18.72 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 2.03 Total: 48.91 kcal Total: -81.79 7.02 -74.77 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890402060.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.555 kcal (2) G-P(sol) polarization free energy of solvation -81.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds