Wall clock time and date at job start Tue Mar 31 2020 01:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46499 * 109.46924 * 2 1 4 4 C 1.36935 * 120.00232 * 85.01547 * 3 2 1 5 5 H 1.08000 * 119.99593 * 325.39419 * 4 3 2 6 6 C 1.38809 * 120.00443 * 145.39102 * 4 3 2 7 7 N 1.31627 * 119.99787 * 337.73902 * 6 4 3 8 8 Si 1.86798 * 120.00371 * 157.73583 * 6 4 3 9 9 H 1.48499 * 109.47046 * 60.00129 * 8 6 4 10 10 H 1.48504 * 109.47515 * 180.02562 * 8 6 4 11 11 H 1.48507 * 109.47136 * 300.00212 * 8 6 4 12 12 C 1.46501 * 119.99789 * 265.00873 * 3 2 1 13 13 C 1.50696 * 109.46957 * 90.00693 * 12 3 2 14 14 C 1.33641 * 122.75623 * 94.73092 * 13 12 3 15 15 S 1.76197 * 107.92913 * 179.97438 * 14 13 12 16 16 C 1.70978 * 90.27948 * 0.27468 * 15 14 13 17 17 C 1.50700 * 124.91269 * 179.83944 * 16 15 14 18 18 F 1.39905 * 109.47306 * 269.99840 * 17 16 15 19 19 F 1.39905 * 109.47240 * 29.99738 * 17 16 15 20 20 F 1.39896 * 109.47095 * 150.00212 * 17 16 15 21 21 N 1.29020 * 110.16940 * 359.83895 * 16 15 14 22 22 H 1.08994 * 109.47058 * 59.99611 * 1 2 3 23 23 H 1.08998 * 109.47482 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46630 * 299.99965 * 1 2 3 25 25 H 1.08999 * 109.46885 * 119.99963 * 2 1 3 26 26 H 1.09000 * 109.46630 * 240.00035 * 2 1 3 27 27 H 0.97000 * 119.99740 * 179.97438 * 7 6 4 28 28 H 1.09004 * 109.47066 * 210.00133 * 12 3 2 29 29 H 1.08998 * 109.47517 * 330.00703 * 12 3 2 30 30 H 1.08005 * 126.03202 * 0.03956 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1494 2.0611 1.1814 5 1 1.4484 1.8882 1.9845 6 6 3.1832 2.9726 1.3467 7 7 4.2634 2.8851 0.5997 8 14 3.0414 4.3233 2.6292 9 1 2.8818 3.7142 3.9741 10 1 4.2690 5.1587 2.6062 11 1 1.8605 5.1713 2.3265 12 6 2.3665 2.0350 -1.2640 13 6 1.1515 2.7311 -1.8208 14 6 0.8957 4.0245 -1.6029 15 16 -0.6085 4.4265 -2.4276 16 6 -0.7483 2.8134 -2.9767 17 6 -1.8751 2.2864 -3.8274 18 9 -2.8998 1.8112 -3.0018 19 9 -2.3682 3.3149 -4.6376 20 9 -1.4036 1.2439 -4.6323 21 7 0.2506 2.1126 -2.5575 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3632 0.5138 0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 4.9857 3.5222 0.7150 28 1 3.1559 2.7661 -1.0894 29 1 2.7150 1.2870 -1.9761 30 1 1.5043 4.7038 -1.0243 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891777526.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:27:06 Heat of formation + Delta-G solvation = -81.481766 kcal Electronic energy + Delta-G solvation = -20237.837200 eV Core-core repulsion = 16553.178096 eV Total energy + Delta-G solvation = -3684.659104 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.055 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.13968 -47.70689 -47.58583 -39.56275 -35.88042 -32.01100 -31.49417 -28.94727 -27.15863 -26.37764 -23.89200 -22.65516 -20.61066 -19.80897 -18.77783 -18.53258 -17.85668 -17.01284 -16.31331 -15.11083 -14.68313 -14.49618 -14.24949 -14.14459 -14.06508 -13.80315 -13.77339 -13.76498 -13.44337 -13.03939 -12.49163 -12.43192 -12.00871 -11.61949 -11.30578 -10.87036 -10.84942 -10.59858 -10.28266 -10.08628 -9.87658 -9.54857 -9.21134 -8.67523 -8.52414 -6.81170 -5.99688 -3.50944 0.73106 1.34721 1.89525 2.54031 3.08302 3.25139 3.31652 3.33829 3.55032 4.20965 4.32904 4.36591 5.01918 5.21217 5.48829 5.76396 5.89709 6.08548 6.33614 6.40023 6.60738 6.68264 6.72048 6.89918 7.17357 7.34173 7.66321 7.96934 8.31673 8.98490 9.61207 10.19057 11.01221 Molecular weight = 280.06amu Principal moments of inertia in cm(-1) A = 0.023819 B = 0.006285 C = 0.005588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.228362 B = 4454.106946 C = 5009.515951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.144 3.856 3 N -0.570 5.570 4 C -0.254 4.254 5 H 0.063 0.937 6 C 0.011 3.989 7 N -0.883 5.883 8 Si 0.895 3.105 9 H -0.279 1.279 10 H -0.288 1.288 11 H -0.282 1.282 12 C 0.205 3.795 13 C 0.066 3.934 14 C -0.205 4.205 15 S 0.148 5.852 16 C -0.097 4.097 17 C 0.557 3.443 18 F -0.167 7.167 19 F -0.171 7.171 20 F -0.160 7.160 21 N -0.397 5.397 22 H 0.053 0.947 23 H 0.036 0.964 24 H 0.044 0.956 25 H 0.046 0.954 26 H 0.039 0.961 27 H 0.259 0.741 28 H 0.121 0.879 29 H 0.048 0.952 30 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.880 2.168 -7.606 11.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.018 3.982 3 N -0.288 5.288 4 C -0.384 4.384 5 H 0.081 0.919 6 C -0.190 4.190 7 N -0.525 5.525 8 Si 0.724 3.276 9 H -0.204 1.204 10 H -0.213 1.213 11 H -0.208 1.208 12 C 0.075 3.925 13 C -0.069 4.069 14 C -0.345 4.345 15 S 0.400 5.600 16 C -0.374 4.374 17 C 0.499 3.501 18 F -0.149 7.149 19 F -0.152 7.152 20 F -0.141 7.141 21 N -0.114 5.114 22 H 0.072 0.928 23 H 0.055 0.945 24 H 0.063 0.937 25 H 0.065 0.935 26 H 0.058 0.942 27 H 0.069 0.931 28 H 0.138 0.862 29 H 0.067 0.933 30 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -9.303 2.533 -7.864 12.442 hybrid contribution 0.285 0.289 0.966 1.048 sum -9.018 2.822 -6.898 11.699 Atomic orbital electron populations 1.22335 0.99769 0.99217 1.01500 1.20877 0.91887 0.86366 0.99039 1.43818 1.74885 1.08375 1.01726 1.19081 1.07322 1.19308 0.92654 0.91887 1.25124 0.94083 1.01398 0.98384 1.69935 1.04695 1.36147 1.41711 0.86478 0.77127 0.82155 0.81835 1.20439 1.21331 1.20788 1.19939 0.89458 0.97312 0.85819 1.22211 0.99566 0.90611 0.94476 1.27335 0.99281 1.00811 1.07115 1.83645 1.22342 1.09175 1.44881 1.26443 1.01982 0.97685 1.11249 1.16993 0.80141 0.75415 0.77586 1.93243 1.60899 1.88576 1.72144 1.93213 1.88649 1.59164 1.74192 1.93233 1.88266 1.58602 1.74039 1.65957 0.99898 1.37074 1.08430 0.92803 0.94484 0.93720 0.93519 0.94236 0.93053 0.86179 0.93344 0.79936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.32 10.21 37.16 0.38 -2.94 16 2 C 0.14 3.08 6.44 -4.04 -0.03 3.05 16 3 N -0.57 -13.62 2.44 -174.61 -0.43 -14.05 16 4 C -0.25 -6.52 9.48 -15.06 -0.14 -6.67 16 5 H 0.06 1.65 7.92 -52.49 -0.42 1.23 16 6 C 0.01 0.27 4.96 -17.43 -0.09 0.18 16 7 N -0.88 -23.31 11.31 55.49 0.63 -22.69 16 8 Si 0.90 20.05 29.61 -169.99 -5.03 15.02 16 9 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 10 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 12 C 0.20 4.60 5.77 -5.20 -0.03 4.57 16 13 C 0.07 1.33 6.25 -84.22 -0.53 0.81 16 14 C -0.20 -3.72 11.12 29.12 0.32 -3.40 16 15 S 0.15 2.25 22.85 -107.50 -2.46 -0.21 16 16 C -0.10 -1.65 6.74 -13.46 -0.09 -1.74 16 17 C 0.56 8.47 3.55 36.01 0.13 8.59 16 18 F -0.17 -2.55 17.30 2.25 0.04 -2.51 16 19 F -0.17 -2.31 17.00 2.25 0.04 -2.28 16 20 F -0.16 -2.51 17.22 2.25 0.04 -2.48 16 21 N -0.40 -7.74 8.94 -8.06 -0.07 -7.81 16 22 H 0.05 1.11 6.53 -51.93 -0.34 0.77 16 23 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 25 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 26 H 0.04 0.81 7.84 -51.93 -0.41 0.40 16 27 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 28 H 0.12 2.92 5.29 -51.93 -0.27 2.65 16 29 H 0.05 1.07 7.86 -51.93 -0.41 0.66 16 30 H 0.18 3.23 8.06 -52.48 -0.42 2.81 16 LS Contribution 288.68 15.07 4.35 4.35 Total: -1.00 -26.27 288.68 -5.63 -31.90 By element: Atomic # 1 Polarization: 0.95 SS G_CDS: -2.67 Total: -1.72 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: -0.07 Total: 2.47 kcal Atomic # 7 Polarization: -44.68 SS G_CDS: 0.13 Total: -44.55 kcal Atomic # 9 Polarization: -7.38 SS G_CDS: 0.12 Total: -7.26 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.03 Total: 15.02 kcal Atomic # 16 Polarization: 2.25 SS G_CDS: -2.46 Total: -0.21 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -26.27 -5.63 -31.90 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891777526.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.578 kcal (2) G-P(sol) polarization free energy of solvation -26.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds