Wall clock time and date at job start Tue Mar 31 2020 01:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46499 * 109.46924 * 2 1 4 4 C 1.36935 * 120.00232 * 85.01547 * 3 2 1 5 5 H 1.08000 * 119.99593 * 325.39419 * 4 3 2 6 6 C 1.38809 * 120.00443 * 145.39102 * 4 3 2 7 7 N 1.31627 * 119.99787 * 337.73902 * 6 4 3 8 8 Si 1.86798 * 120.00371 * 157.73583 * 6 4 3 9 9 H 1.48499 * 109.47046 * 60.00129 * 8 6 4 10 10 H 1.48504 * 109.47515 * 180.02562 * 8 6 4 11 11 H 1.48507 * 109.47136 * 300.00212 * 8 6 4 12 12 C 1.46501 * 119.99789 * 265.00873 * 3 2 1 13 13 C 1.50696 * 109.46957 * 90.00693 * 12 3 2 14 14 C 1.33641 * 122.75623 * 94.73092 * 13 12 3 15 15 S 1.76197 * 107.92913 * 179.97438 * 14 13 12 16 16 C 1.70978 * 90.27948 * 0.27468 * 15 14 13 17 17 C 1.50700 * 124.91269 * 179.83944 * 16 15 14 18 18 F 1.39905 * 109.47306 * 269.99840 * 17 16 15 19 19 F 1.39905 * 109.47240 * 29.99738 * 17 16 15 20 20 F 1.39896 * 109.47095 * 150.00212 * 17 16 15 21 21 N 1.29020 * 110.16940 * 359.83895 * 16 15 14 22 22 H 1.08994 * 109.47058 * 59.99611 * 1 2 3 23 23 H 1.08998 * 109.47482 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46630 * 299.99965 * 1 2 3 25 25 H 1.08999 * 109.46885 * 119.99963 * 2 1 3 26 26 H 1.09000 * 109.46630 * 240.00035 * 2 1 3 27 27 H 0.97000 * 119.99740 * 179.97438 * 7 6 4 28 28 H 1.09004 * 109.47066 * 210.00133 * 12 3 2 29 29 H 1.08998 * 109.47517 * 330.00703 * 12 3 2 30 30 H 1.08005 * 126.03202 * 0.03956 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1494 2.0611 1.1814 5 1 1.4484 1.8882 1.9845 6 6 3.1832 2.9726 1.3467 7 7 4.2634 2.8851 0.5997 8 14 3.0414 4.3233 2.6292 9 1 2.8818 3.7142 3.9741 10 1 4.2690 5.1587 2.6062 11 1 1.8605 5.1713 2.3265 12 6 2.3665 2.0350 -1.2640 13 6 1.1515 2.7311 -1.8208 14 6 0.8957 4.0245 -1.6029 15 16 -0.6085 4.4265 -2.4276 16 6 -0.7483 2.8134 -2.9767 17 6 -1.8751 2.2864 -3.8274 18 9 -2.8998 1.8112 -3.0018 19 9 -2.3682 3.3149 -4.6376 20 9 -1.4036 1.2439 -4.6323 21 7 0.2506 2.1126 -2.5575 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3632 0.5138 0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 4.9857 3.5222 0.7150 28 1 3.1559 2.7661 -1.0894 29 1 2.7150 1.2870 -1.9761 30 1 1.5043 4.7038 -1.0243 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891777526.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:27:05 Heat of formation + Delta-G solvation = -95.045538 kcal Electronic energy + Delta-G solvation = -20238.425369 eV Core-core repulsion = 16553.178096 eV Total energy + Delta-G solvation = -3685.247273 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.055 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -51.33750 -48.87682 -48.80611 -41.03502 -37.62900 -33.86031 -32.98810 -30.61157 -28.52960 -28.11600 -25.61755 -24.06670 -22.31313 -21.25656 -20.13548 -19.73654 -19.10627 -18.72264 -17.83016 -16.92741 -16.07837 -15.77218 -15.70651 -15.62409 -15.53763 -15.25276 -14.97618 -14.97310 -14.95012 -14.53133 -14.18950 -13.81707 -13.52616 -13.26320 -13.13543 -12.60051 -12.45101 -12.33408 -12.13361 -11.83361 -11.56683 -10.94172 -10.60587 -10.55633 -9.94005 -8.67685 -7.89108 -5.46654 -0.64412 0.01662 0.48522 1.27095 1.46088 1.50071 1.56227 1.60932 2.29399 2.50073 2.98627 3.13567 3.19339 3.67401 3.76569 4.27881 4.37008 4.42591 4.71351 4.80165 4.92925 5.03347 5.10766 5.24080 5.50148 5.55679 5.68830 6.39575 6.55049 7.09968 7.76805 8.32276 9.09604 Molecular weight = 280.06amu Principal moments of inertia in cm(-1) A = 0.023819 B = 0.006285 C = 0.005588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.228362 B = 4454.106946 C = 5009.515951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.141 3.859 3 N -0.586 5.586 4 C -0.267 4.267 5 H 0.053 0.947 6 C -0.024 4.024 7 N -0.911 5.911 8 Si 0.951 3.049 9 H -0.281 1.281 10 H -0.289 1.289 11 H -0.274 1.274 12 C 0.212 3.788 13 C 0.051 3.949 14 C -0.219 4.219 15 S 0.248 5.752 16 C -0.111 4.111 17 C 0.564 3.436 18 F -0.166 7.166 19 F -0.158 7.158 20 F -0.163 7.163 21 N -0.423 5.423 22 H 0.044 0.956 23 H 0.062 0.938 24 H 0.032 0.968 25 H 0.039 0.961 26 H 0.044 0.956 27 H 0.258 0.742 28 H 0.101 0.899 29 H 0.040 0.960 30 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.575 3.292 -8.077 13.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.016 3.984 3 N -0.306 5.306 4 C -0.397 4.397 5 H 0.071 0.929 6 C -0.222 4.222 7 N -0.554 5.554 8 Si 0.778 3.222 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.199 1.199 12 C 0.082 3.918 13 C -0.084 4.084 14 C -0.360 4.360 15 S 0.500 5.500 16 C -0.388 4.388 17 C 0.506 3.494 18 F -0.147 7.147 19 F -0.139 7.139 20 F -0.145 7.145 21 N -0.140 5.140 22 H 0.063 0.937 23 H 0.081 0.919 24 H 0.051 0.949 25 H 0.057 0.943 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.118 0.882 29 H 0.059 0.941 30 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -11.034 3.663 -8.357 14.318 hybrid contribution 0.724 -0.016 0.995 1.231 sum -10.309 3.647 -7.362 13.183 Atomic orbital electron populations 1.22156 0.98224 1.00544 1.00382 1.20939 0.93066 0.85536 0.98854 1.43949 1.75625 1.09301 1.01720 1.19145 1.07219 1.20043 0.93338 0.92946 1.25669 0.93667 1.02846 1.00065 1.70044 1.05240 1.36827 1.43280 0.85618 0.77062 0.79871 0.79632 1.20668 1.21431 1.19947 1.19616 0.90167 0.96651 0.85337 1.21717 0.99285 0.91416 0.95947 1.27459 1.01329 1.00463 1.06711 1.83288 1.18358 1.06321 1.41990 1.26879 1.01860 0.99095 1.10927 1.16778 0.79663 0.75541 0.77432 1.93250 1.60673 1.88591 1.72196 1.93243 1.88376 1.58533 1.73724 1.93231 1.88344 1.58818 1.74060 1.65881 1.00681 1.38006 1.09417 0.93653 0.91893 0.94881 0.94257 0.93783 0.93299 0.88191 0.94140 0.79794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.93 10.21 71.98 0.74 -5.20 16 2 C 0.14 6.08 6.44 86.38 0.56 6.64 16 3 N -0.59 -28.46 2.44 -706.35 -1.72 -30.18 16 4 C -0.27 -13.92 9.48 84.03 0.80 -13.13 16 5 H 0.05 2.79 7.92 -2.91 -0.02 2.76 16 6 C -0.02 -1.25 4.96 84.86 0.42 -0.83 16 7 N -0.91 -48.93 11.31 21.65 0.24 -48.68 16 8 Si 0.95 41.19 29.61 68.60 2.03 43.22 16 9 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 10 H -0.29 -12.44 7.11 99.48 0.71 -11.73 16 11 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 12 C 0.21 9.71 5.77 85.63 0.49 10.21 16 13 C 0.05 2.04 6.25 41.52 0.26 2.30 16 14 C -0.22 -7.65 11.12 66.78 0.74 -6.91 16 15 S 0.25 6.74 22.85 -56.49 -1.29 5.45 16 16 C -0.11 -3.55 6.74 88.52 0.60 -2.95 16 17 C 0.56 15.74 3.55 71.24 0.25 16.00 16 18 F -0.17 -4.64 17.30 44.97 0.78 -3.86 16 19 F -0.16 -3.77 17.00 44.97 0.76 -3.00 16 20 F -0.16 -4.83 17.22 44.97 0.77 -4.05 16 21 N -0.42 -16.02 8.94 -179.41 -1.60 -17.62 16 22 H 0.04 1.82 6.53 -2.39 -0.02 1.80 16 23 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 24 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.04 1.70 8.08 -2.39 -0.02 1.69 16 26 H 0.04 1.81 7.84 -2.39 -0.02 1.79 16 27 H 0.26 13.33 8.31 -92.71 -0.77 12.56 16 28 H 0.10 5.01 5.29 -2.39 -0.01 4.99 16 29 H 0.04 1.84 7.86 -2.39 -0.02 1.82 16 30 H 0.18 6.32 8.06 -2.91 -0.02 6.30 16 Total: -1.00 -55.44 288.68 6.01 -49.43 By element: Atomic # 1 Polarization: 1.98 SS G_CDS: 1.18 Total: 3.16 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: 4.86 Total: 6.14 kcal Atomic # 7 Polarization: -93.40 SS G_CDS: -3.08 Total: -96.49 kcal Atomic # 9 Polarization: -13.23 SS G_CDS: 2.32 Total: -10.92 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.03 Total: 43.22 kcal Atomic # 16 Polarization: 6.74 SS G_CDS: -1.29 Total: 5.45 kcal Total: -55.44 6.01 -49.43 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891777526.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.619 kcal (2) G-P(sol) polarization free energy of solvation -55.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds