Wall clock time and date at job start Tue Mar 31 2020 00:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00388 * 2 1 4 4 H 1.48503 * 109.46926 * 269.99962 * 3 2 1 5 5 H 1.48506 * 109.46987 * 29.99248 * 3 2 1 6 6 H 1.48494 * 109.47527 * 149.99734 * 3 2 1 7 7 C 1.37883 * 119.99982 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99815 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00023 * 179.97438 * 7 2 1 10 10 N 1.46901 * 109.46943 * 180.02562 * 9 7 2 11 11 C 1.46905 * 110.99870 * 180.02562 * 10 9 7 12 12 C 1.50697 * 109.47066 * 180.02562 * 11 10 9 13 13 C 1.33643 * 126.03520 * 90.00158 * 12 11 10 14 14 N 1.31788 * 114.49850 * 179.97438 * 13 12 11 15 15 C 1.29028 * 117.12381 * 359.97438 * 14 13 12 16 16 C 1.50695 * 124.91477 * 179.97438 * 15 14 13 17 17 C 1.52998 * 109.47034 * 90.02629 * 16 15 14 18 18 F 1.39901 * 109.47358 * 59.99951 * 17 16 15 19 19 F 1.39908 * 109.47274 * 179.97438 * 17 16 15 20 20 F 1.39899 * 109.47195 * 299.99867 * 17 16 15 21 21 S 1.70980 * 110.16835 * 359.72695 * 15 14 13 22 22 H 0.97002 * 119.99560 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.46763 * 60.00533 * 9 7 2 24 24 H 1.08995 * 109.47483 * 300.00190 * 9 7 2 25 25 H 1.00901 * 111.00067 * 303.95401 * 10 9 7 26 26 H 1.09001 * 109.46798 * 300.00327 * 11 10 9 27 27 H 1.08998 * 109.46961 * 60.00043 * 11 10 9 28 28 H 1.07998 * 122.75293 * 0.02562 * 13 12 11 29 29 H 1.09000 * 109.47583 * 210.02393 * 16 15 14 30 30 H 1.09007 * 109.47343 * 330.02824 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 7 4.0011 -2.5791 0.0001 11 6 5.4697 -2.6183 0.0001 12 6 5.9339 -4.0520 -0.0004 13 6 6.1761 -4.7996 -1.0814 14 7 6.5744 -6.0280 -0.8182 15 6 6.6820 -6.3580 0.4245 16 6 7.1202 -7.7110 0.9227 17 6 8.6408 -7.7246 1.0911 18 9 9.0166 -6.7433 2.0148 19 9 9.0476 -8.9805 1.5542 20 9 9.2488 -7.4622 -0.1413 21 16 6.2621 -5.0359 1.4240 22 1 -0.4849 0.8401 -0.0004 23 1 3.8751 -0.6797 0.8895 24 1 3.8746 -0.6809 -0.8904 25 1 3.6259 -3.0952 0.7817 26 1 5.8466 -2.1144 -0.8899 27 1 5.8465 -2.1143 0.8901 28 1 6.0562 -4.4273 -2.0880 29 1 6.6466 -7.9156 1.8829 30 1 6.8275 -8.4756 0.2030 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894082121.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:36 Heat of formation + Delta-G solvation = -110.999982 kcal Electronic energy + Delta-G solvation = -18787.669488 eV Core-core repulsion = 15101.730378 eV Total energy + Delta-G solvation = -3685.939110 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.055 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.38486 -47.91714 -47.82379 -39.82895 -35.96088 -33.56712 -32.47261 -30.22239 -27.34849 -25.56711 -23.76364 -22.97632 -21.25219 -19.84224 -18.95592 -18.65064 -18.21524 -17.49381 -16.89378 -15.64203 -14.91153 -14.82452 -14.72559 -14.54214 -14.29052 -14.17550 -14.01229 -13.99016 -13.89952 -13.62574 -13.53592 -12.86241 -12.48663 -12.30543 -12.15989 -11.65557 -11.21728 -10.76739 -10.66584 -10.00602 -9.78822 -9.40506 -9.34701 -8.94218 -8.66575 -7.69438 -6.13129 -4.12371 0.47259 1.15248 1.60760 2.36240 2.80335 3.23409 3.31088 3.31628 3.38023 3.50941 3.70472 4.10316 4.34790 4.60445 4.79929 4.92243 5.06197 5.10092 5.19145 5.30596 5.79545 5.86885 6.10947 6.60283 6.86567 7.44441 7.56515 7.71063 8.09573 8.53347 8.94197 9.47467 10.99955 Molecular weight = 280.06amu Principal moments of inertia in cm(-1) A = 0.049993 B = 0.003175 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.948430 B = 8815.916784 C = 8848.854792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.070 3.930 3 Si 0.878 3.122 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.268 1.268 7 C -0.520 4.520 8 H 0.080 0.920 9 C 0.164 3.836 10 N -0.673 5.673 11 C 0.126 3.874 12 C -0.182 4.182 13 C 0.042 3.958 14 N -0.444 5.444 15 C -0.003 4.003 16 C -0.082 4.082 17 C 0.458 3.542 18 F -0.180 7.180 19 F -0.181 7.181 20 F -0.173 7.173 21 S 0.151 5.849 22 H 0.265 0.735 23 H -0.013 1.013 24 H 0.026 0.974 25 H 0.338 0.662 26 H 0.092 0.908 27 H 0.037 0.963 28 H 0.182 0.818 29 H 0.129 0.871 30 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.702 -14.723 3.944 23.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.132 4.132 3 Si 0.705 3.295 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.193 1.193 7 C -0.558 4.558 8 H 0.098 0.902 9 C 0.037 3.963 10 N -0.304 5.304 11 C -0.006 4.006 12 C -0.303 4.303 13 C -0.110 4.110 14 N -0.158 5.158 15 C -0.279 4.279 16 C -0.124 4.124 17 C 0.402 3.598 18 F -0.161 7.161 19 F -0.162 7.162 20 F -0.155 7.155 21 S 0.405 5.595 22 H 0.075 0.925 23 H 0.005 0.995 24 H 0.044 0.956 25 H 0.155 0.845 26 H 0.110 0.890 27 H 0.055 0.945 28 H 0.199 0.801 29 H 0.147 0.853 30 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 17.607 -14.906 3.939 23.403 hybrid contribution 0.613 1.477 -0.015 1.599 sum 18.220 -13.429 3.924 22.972 Atomic orbital electron populations 1.69894 1.06182 1.27016 1.50522 1.24903 0.94769 0.98975 0.94593 0.86819 0.80211 0.83780 0.78669 1.20043 1.21112 1.19255 1.21003 0.88680 0.94925 1.51166 0.90231 1.20051 0.96935 0.84255 0.95101 1.60613 1.02661 1.17377 1.49753 1.20413 0.91533 0.86960 1.01700 1.26289 1.06895 1.02750 0.94406 1.21694 1.01109 0.87501 1.00670 1.66193 1.13511 1.17968 1.18146 1.25880 1.09220 1.00092 0.92734 1.21314 0.89361 0.94899 1.06784 1.20316 0.91649 0.73593 0.74205 1.93217 1.93080 1.62928 1.66912 1.93206 1.92255 1.41757 1.88983 1.93241 1.85509 1.93709 1.43004 1.84010 1.60164 1.04355 1.10989 0.92517 0.99505 0.95625 0.84507 0.88991 0.94470 0.80085 0.85251 0.84452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.14 13.96 55.43 0.77 -26.37 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 20.98 27.47 -169.99 -4.67 16.31 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.27 -6.12 6.54 56.52 0.37 -5.75 16 7 C -0.52 -14.50 9.87 -34.44 -0.34 -14.84 16 8 H 0.08 2.42 8.06 -52.49 -0.42 2.00 16 9 C 0.16 3.80 4.51 -4.98 -0.02 3.78 16 10 N -0.67 -13.18 6.48 -116.34 -0.75 -13.94 16 11 C 0.13 1.95 6.22 -4.97 -0.03 1.92 16 12 C -0.18 -2.53 6.11 -35.92 -0.22 -2.75 16 13 C 0.04 0.58 11.25 -19.18 -0.22 0.36 16 14 N -0.44 -6.06 10.54 -11.86 -0.13 -6.18 16 15 C 0.00 -0.03 6.11 -13.46 -0.08 -0.11 16 16 C -0.08 -0.65 5.85 -27.89 -0.16 -0.81 16 17 C 0.46 4.24 3.15 37.16 0.12 4.36 16 18 F -0.18 -1.84 17.02 2.25 0.04 -1.80 16 19 F -0.18 -1.58 17.32 2.25 0.04 -1.54 16 20 F -0.17 -1.97 17.02 2.25 0.04 -1.93 16 21 S 0.15 1.78 23.18 -107.50 -2.49 -0.72 16 22 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 23 H -0.01 -0.29 7.20 -51.93 -0.37 -0.67 16 24 H 0.03 0.60 7.57 -51.93 -0.39 0.20 16 25 H 0.34 6.50 8.71 -39.29 -0.34 6.16 16 26 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 27 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.18 2.27 8.06 -52.49 -0.42 1.85 16 29 H 0.13 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.14 0.89 8.14 -51.92 -0.42 0.46 16 LS Contribution 292.76 15.07 4.41 4.41 Total: -1.00 -31.10 292.76 -6.61 -37.70 By element: Atomic # 1 Polarization: 3.08 SS G_CDS: -2.81 Total: 0.27 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: -1.05 Total: -6.21 kcal Atomic # 7 Polarization: -46.38 SS G_CDS: -0.11 Total: -46.49 kcal Atomic # 9 Polarization: -5.39 SS G_CDS: 0.12 Total: -5.28 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.67 Total: 16.31 kcal Atomic # 16 Polarization: 1.78 SS G_CDS: -2.49 Total: -0.72 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -31.10 -6.61 -37.70 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894082121.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.296 kcal (2) G-P(sol) polarization free energy of solvation -31.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds