Wall clock time and date at job start Tue Mar 31 2020 00:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00388 * 2 1 4 4 H 1.48503 * 109.46926 * 269.99962 * 3 2 1 5 5 H 1.48506 * 109.46987 * 29.99248 * 3 2 1 6 6 H 1.48494 * 109.47527 * 149.99734 * 3 2 1 7 7 C 1.37883 * 119.99982 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99815 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00023 * 179.97438 * 7 2 1 10 10 N 1.46901 * 109.46943 * 180.02562 * 9 7 2 11 11 C 1.46905 * 110.99870 * 180.02562 * 10 9 7 12 12 C 1.50697 * 109.47066 * 180.02562 * 11 10 9 13 13 C 1.33643 * 126.03520 * 90.00158 * 12 11 10 14 14 N 1.31788 * 114.49850 * 179.97438 * 13 12 11 15 15 C 1.29028 * 117.12381 * 359.97438 * 14 13 12 16 16 C 1.50695 * 124.91477 * 179.97438 * 15 14 13 17 17 C 1.52998 * 109.47034 * 90.02629 * 16 15 14 18 18 F 1.39901 * 109.47358 * 59.99951 * 17 16 15 19 19 F 1.39908 * 109.47274 * 179.97438 * 17 16 15 20 20 F 1.39899 * 109.47195 * 299.99867 * 17 16 15 21 21 S 1.70980 * 110.16835 * 359.72695 * 15 14 13 22 22 H 0.97002 * 119.99560 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.46763 * 60.00533 * 9 7 2 24 24 H 1.08995 * 109.47483 * 300.00190 * 9 7 2 25 25 H 1.00901 * 111.00067 * 303.95401 * 10 9 7 26 26 H 1.09001 * 109.46798 * 300.00327 * 11 10 9 27 27 H 1.08998 * 109.46961 * 60.00043 * 11 10 9 28 28 H 1.07998 * 122.75293 * 0.02562 * 13 12 11 29 29 H 1.09000 * 109.47583 * 210.02393 * 16 15 14 30 30 H 1.09007 * 109.47343 * 330.02824 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 7 4.0011 -2.5791 0.0001 11 6 5.4697 -2.6183 0.0001 12 6 5.9339 -4.0520 -0.0004 13 6 6.1761 -4.7996 -1.0814 14 7 6.5744 -6.0280 -0.8182 15 6 6.6820 -6.3580 0.4245 16 6 7.1202 -7.7110 0.9227 17 6 8.6408 -7.7246 1.0911 18 9 9.0166 -6.7433 2.0148 19 9 9.0476 -8.9805 1.5542 20 9 9.2488 -7.4622 -0.1413 21 16 6.2621 -5.0359 1.4240 22 1 -0.4849 0.8401 -0.0004 23 1 3.8751 -0.6797 0.8895 24 1 3.8746 -0.6809 -0.8904 25 1 3.6259 -3.0952 0.7817 26 1 5.8466 -2.1144 -0.8899 27 1 5.8465 -2.1143 0.8901 28 1 6.0562 -4.4273 -2.0880 29 1 6.6466 -7.9156 1.8829 30 1 6.8275 -8.4756 0.2030 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894082121.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:36 Heat of formation + Delta-G solvation = -132.836288 kcal Electronic energy + Delta-G solvation = -18788.616382 eV Core-core repulsion = 15101.730378 eV Total energy + Delta-G solvation = -3686.886003 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.055 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -51.13607 -48.64599 -48.61749 -40.81913 -37.44794 -34.89425 -34.07059 -31.56581 -28.91401 -26.69018 -24.89077 -23.93391 -23.09429 -20.81169 -19.76286 -19.45042 -19.17892 -18.84092 -18.31131 -17.01663 -16.31107 -15.87515 -15.68930 -15.58457 -15.50586 -15.12845 -15.04690 -14.87016 -14.75793 -14.74526 -14.63983 -14.38689 -13.67774 -13.62535 -13.16420 -13.05981 -12.58927 -12.53935 -12.17656 -11.86951 -11.54114 -10.82073 -10.76592 -10.36444 -9.93575 -9.23971 -8.30382 -6.35823 -0.50058 0.20864 0.62916 1.37196 1.38341 1.48925 1.53154 1.91131 2.34239 2.59850 2.80142 3.01411 3.04002 3.32363 3.51797 3.83840 3.89218 4.13808 4.21505 4.41712 4.59096 4.71159 4.82352 5.03543 5.10055 5.49284 5.86535 6.45294 6.55319 6.59657 6.72664 7.29016 8.86337 Molecular weight = 280.06amu Principal moments of inertia in cm(-1) A = 0.049993 B = 0.003175 C = 0.003163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.948430 B = 8815.916784 C = 8848.854792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.007 3.993 3 Si 0.953 3.047 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.246 1.246 7 C -0.530 4.530 8 H 0.036 0.964 9 C 0.174 3.826 10 N -0.683 5.683 11 C 0.131 3.869 12 C -0.208 4.208 13 C 0.039 3.961 14 N -0.469 5.469 15 C 0.006 3.994 16 C -0.082 4.082 17 C 0.460 3.540 18 F -0.186 7.186 19 F -0.176 7.176 20 F -0.188 7.188 21 S 0.177 5.823 22 H 0.268 0.732 23 H -0.006 1.006 24 H 0.032 0.968 25 H 0.336 0.664 26 H 0.100 0.900 27 H 0.048 0.952 28 H 0.186 0.814 29 H 0.162 0.838 30 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.600 -14.778 4.555 24.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.190 4.190 3 Si 0.776 3.224 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.170 1.170 7 C -0.569 4.569 8 H 0.054 0.946 9 C 0.046 3.954 10 N -0.314 5.314 11 C 0.000 4.000 12 C -0.330 4.330 13 C -0.113 4.113 14 N -0.184 5.184 15 C -0.271 4.271 16 C -0.123 4.123 17 C 0.404 3.596 18 F -0.168 7.168 19 F -0.157 7.157 20 F -0.169 7.169 21 S 0.432 5.568 22 H 0.077 0.923 23 H 0.012 0.988 24 H 0.050 0.950 25 H 0.154 0.846 26 H 0.118 0.882 27 H 0.066 0.934 28 H 0.203 0.797 29 H 0.180 0.820 30 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 19.530 -14.983 4.559 25.034 hybrid contribution 0.028 1.313 -0.176 1.325 sum 19.558 -13.670 4.383 24.261 Atomic orbital electron populations 1.70057 1.08301 1.28303 1.52153 1.25907 0.95643 1.03430 0.94049 0.85635 0.79393 0.78108 0.79290 1.19051 1.20862 1.16951 1.21310 0.91402 0.93405 1.50750 0.94615 1.19798 0.93702 0.86491 0.95433 1.60471 1.05660 1.15282 1.50018 1.20359 0.88630 0.88442 1.02569 1.26110 1.08703 1.02453 0.95691 1.21868 1.00588 0.87762 1.01072 1.66261 1.14910 1.17970 1.19209 1.26502 1.07173 1.01209 0.92235 1.21572 0.88409 0.93329 1.08983 1.20443 0.92097 0.73513 0.73537 1.93206 1.93230 1.63277 1.67080 1.93216 1.92273 1.41392 1.88859 1.93216 1.85909 1.93831 1.43986 1.83883 1.59417 1.03757 1.09695 0.92320 0.98826 0.95009 0.84630 0.88237 0.93404 0.79689 0.81975 0.82619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.64 13.96 21.45 0.30 -58.34 16 2 C 0.01 0.42 5.47 84.66 0.46 0.88 16 3 Si 0.95 42.71 27.47 68.60 1.88 44.60 16 4 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 5 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 6 H -0.25 -10.08 6.54 99.48 0.65 -9.43 16 7 C -0.53 -30.11 9.87 25.60 0.25 -29.86 16 8 H 0.04 2.27 8.06 -2.91 -0.02 2.25 16 9 C 0.17 7.90 4.51 85.56 0.39 8.28 16 10 N -0.68 -26.35 6.48 -521.98 -3.38 -29.73 16 11 C 0.13 3.86 6.22 85.55 0.53 4.39 16 12 C -0.21 -5.52 6.11 24.64 0.15 -5.37 16 13 C 0.04 1.04 11.25 83.66 0.94 1.98 16 14 N -0.47 -12.11 10.54 -191.44 -2.02 -14.13 16 15 C 0.01 0.12 6.11 88.52 0.54 0.66 16 16 C -0.08 -1.07 5.85 29.85 0.17 -0.89 16 17 C 0.46 7.51 3.15 71.98 0.23 7.74 16 18 F -0.19 -3.44 17.02 44.97 0.77 -2.67 16 19 F -0.18 -2.69 17.32 44.97 0.78 -1.91 16 20 F -0.19 -3.99 17.02 44.97 0.77 -3.23 16 21 S 0.18 3.84 23.18 -56.49 -1.31 2.53 16 22 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 23 H -0.01 -0.26 7.20 -2.39 -0.02 -0.28 16 24 H 0.03 1.41 7.57 -2.39 -0.02 1.40 16 25 H 0.34 12.93 8.71 -89.69 -0.78 12.15 16 26 H 0.10 2.74 8.14 -2.39 -0.02 2.72 16 27 H 0.05 1.31 8.14 -2.39 -0.02 1.30 16 28 H 0.19 4.54 8.06 -2.91 -0.02 4.52 16 29 H 0.16 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.16 1.53 8.14 -2.38 -0.02 1.51 16 Total: -1.00 -67.64 292.76 1.80 -65.83 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: 0.35 Total: 9.25 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: 3.67 Total: -12.19 kcal Atomic # 7 Polarization: -97.10 SS G_CDS: -5.10 Total: -102.20 kcal Atomic # 9 Polarization: -10.12 SS G_CDS: 2.31 Total: -7.81 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 1.88 Total: 44.60 kcal Atomic # 16 Polarization: 3.84 SS G_CDS: -1.31 Total: 2.53 kcal Total: -67.64 1.80 -65.83 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894082121.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.004 kcal (2) G-P(sol) polarization free energy of solvation -67.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds