Wall clock time and date at job start Tue Mar 31 2020 01:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48508 * 109.47141 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47494 * 299.99834 * 3 2 1 6 6 H 1.48505 * 109.47047 * 60.00014 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46623 * 179.97438 * 10 9 7 12 12 C 1.50706 * 109.46953 * 179.97438 * 11 10 9 13 13 N 1.31126 * 126.55163 * 89.99777 * 12 11 10 14 14 C 1.34489 * 105.61796 * 180.02562 * 13 12 11 15 15 C 1.50706 * 126.29168 * 180.02562 * 14 13 12 16 16 C 1.50704 * 109.46736 * 90.00249 * 15 14 13 17 17 C 1.38125 * 123.88405 * 124.72854 * 16 15 14 18 18 N 1.30410 * 112.22857 * 179.85179 * 17 16 15 19 19 S 1.56002 * 108.39823 * 0.39422 * 18 17 16 20 20 N 1.30412 * 123.88764 * 305.02900 * 16 15 14 21 21 N 1.29945 * 107.42474 * 0.02562 * 14 13 12 22 22 O 1.21304 * 110.24804 * 359.69841 * 21 14 13 23 23 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 24 24 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 25 25 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 26 26 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 27 27 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 28 28 H 1.09000 * 109.47486 * 299.99829 * 11 10 9 29 29 H 1.09001 * 109.47362 * 60.00551 * 11 10 9 30 30 H 1.08997 * 109.47377 * 210.00101 * 15 14 13 31 31 H 1.09001 * 109.46773 * 330.00608 * 15 14 13 32 32 H 1.08010 * 123.88196 * 359.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4804 -4.9870 0.0001 12 6 2.4598 -6.1325 -0.0005 13 7 2.9680 -6.7260 1.0525 14 6 3.7844 -7.6804 0.5715 15 6 4.6082 -8.6437 1.3868 16 6 3.8030 -9.8883 1.6583 17 6 4.2251 -11.1637 1.3377 18 7 3.3525 -12.0719 1.6763 19 16 2.1251 -11.3585 2.3231 20 7 2.6250 -9.8845 2.2180 21 7 3.7324 -7.6195 -0.7255 22 8 2.9727 -6.7405 -1.0744 23 1 -0.4850 0.8400 -0.0004 24 1 0.6241 -2.5568 -0.8902 25 1 0.6248 -2.5571 0.8897 26 1 2.8721 -3.6043 -0.8905 27 1 2.8721 -3.6042 0.8895 28 1 0.8541 -5.0446 0.8903 29 1 0.8535 -5.0451 -0.8897 30 1 5.5102 -8.9078 0.8349 31 1 4.8842 -8.1760 2.3319 32 1 5.1700 -11.3838 0.8632 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000896870688.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:56:59 Heat of formation + Delta-G solvation = 108.034878 kcal Electronic energy + Delta-G solvation = -18182.013236 eV Core-core repulsion = 15079.721682 eV Total energy + Delta-G solvation = -3102.291554 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.073 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -45.43185 -41.17683 -36.14478 -35.33797 -33.91283 -33.02624 -31.64969 -30.29326 -27.75881 -25.93496 -24.28178 -23.29449 -21.78592 -20.91544 -20.33442 -19.56699 -17.89739 -17.37767 -16.33982 -16.15231 -16.04384 -14.87936 -14.63506 -14.47544 -14.37187 -13.87184 -13.27036 -12.60906 -12.47092 -12.16834 -12.06450 -11.60406 -11.46833 -11.31655 -11.17170 -11.13001 -10.90917 -10.87595 -10.82410 -10.57473 -9.88638 -9.84034 -9.40545 -9.33469 -9.11423 -8.38927 -6.04000 -4.06382 0.38880 1.19750 1.30101 1.46123 1.72110 2.36485 3.02442 3.29879 3.37664 3.41771 3.62359 3.98753 4.19713 4.43876 4.52952 4.82256 4.96400 5.05517 5.28922 5.32450 5.40112 5.56621 5.64673 5.76666 6.07724 6.12307 6.31657 6.49339 6.63321 6.94660 7.60423 7.71888 7.94756 8.28569 8.36217 9.00144 9.58144 11.07370 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.042483 B = 0.002754 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.927281 B =10165.908953 C =10378.356730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.056 0.944 9 C 0.022 3.978 10 C -0.106 4.106 11 C -0.033 4.033 12 C 0.205 3.795 13 N -0.475 5.475 14 C 0.170 3.830 15 C 0.062 3.938 16 C 0.059 3.941 17 C 0.044 3.956 18 N -0.574 5.574 19 S 0.678 5.322 20 N -0.549 5.549 21 N -0.390 5.390 22 O 0.073 5.927 23 H 0.261 0.739 24 H 0.021 0.979 25 H 0.021 0.979 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.107 0.893 29 H 0.098 0.902 30 H 0.117 0.883 31 H 0.120 0.880 32 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.686 -22.392 3.095 23.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.074 0.926 9 C -0.015 4.015 10 C -0.144 4.144 11 C -0.072 4.072 12 C -0.014 4.014 13 N -0.208 5.208 14 C -0.104 4.104 15 C 0.019 3.981 16 C -0.117 4.117 17 C -0.150 4.150 18 N -0.416 5.416 19 S 0.721 5.279 20 N -0.393 5.393 21 N -0.099 5.099 22 O 0.015 5.985 23 H 0.070 0.930 24 H 0.039 0.961 25 H 0.039 0.961 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.126 0.874 29 H 0.117 0.883 30 H 0.135 0.865 31 H 0.138 0.862 32 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 5.229 -23.740 3.814 24.607 hybrid contribution 1.886 1.729 -0.746 2.665 sum 7.116 -22.012 3.069 23.336 Atomic orbital electron populations 1.69964 1.06032 1.26612 1.50784 1.25011 0.94860 0.99298 0.95243 0.86533 0.80125 0.83730 0.77604 1.19735 1.20984 1.20990 1.21235 0.93117 0.90882 1.50699 0.92568 1.19111 0.93795 0.90826 0.97742 1.21734 0.99555 0.91609 1.01549 1.20659 0.93428 0.87531 1.05585 1.29371 0.96202 0.96013 0.79833 1.71947 1.11705 1.08419 1.28730 1.25232 0.99157 0.97706 0.88329 1.18265 0.93470 0.86204 1.00201 1.22182 0.91904 0.97099 1.00500 1.23705 1.01821 0.86973 1.02538 1.72375 1.09876 1.38821 1.20494 1.79181 1.20939 0.85797 1.41979 1.72241 1.16442 1.28556 1.22033 1.74576 1.11740 1.08207 1.15421 1.85280 1.42629 1.34429 1.36170 0.92980 0.96077 0.96076 0.92536 0.92311 0.87436 0.88332 0.86519 0.86203 0.77708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.24 13.29 55.43 0.74 -25.50 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.52 -14.31 9.11 -34.44 -0.31 -14.63 16 8 H 0.06 1.51 7.74 -52.48 -0.41 1.11 16 9 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 10 C -0.11 -2.03 5.14 -26.73 -0.14 -2.16 16 11 C -0.03 -0.51 5.84 -27.88 -0.16 -0.68 16 12 C 0.21 3.26 7.77 -13.06 -0.10 3.16 16 13 N -0.47 -7.73 11.55 -9.87 -0.11 -7.85 16 14 C 0.17 2.41 7.38 -156.38 -1.15 1.25 16 15 C 0.06 0.60 6.38 -29.03 -0.19 0.41 16 16 C 0.06 0.60 6.17 -83.23 -0.51 0.09 16 17 C 0.04 0.38 11.39 -18.20 -0.21 0.17 16 18 N -0.57 -5.69 11.45 18.94 0.22 -5.48 16 19 S 0.68 6.25 23.71 -107.50 -2.55 3.70 16 20 N -0.55 -6.61 11.34 22.70 0.26 -6.35 16 21 N -0.39 -5.96 12.16 30.90 0.38 -5.58 16 22 O 0.07 1.15 11.31 18.11 0.20 1.36 16 23 H 0.26 7.20 8.31 -40.82 -0.34 6.87 16 24 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.11 1.62 8.14 -51.93 -0.42 1.20 16 29 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 30 H 0.12 0.72 8.07 -51.93 -0.42 0.31 16 31 H 0.12 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.21 0.99 8.06 -52.48 -0.42 0.56 16 LS Contribution 304.45 15.07 4.59 4.59 Total: -1.00 -33.07 304.45 -7.66 -40.72 By element: Atomic # 1 Polarization: -2.10 SS G_CDS: -3.34 Total: -5.44 kcal Atomic # 6 Polarization: -7.46 SS G_CDS: -3.01 Total: -10.47 kcal Atomic # 7 Polarization: -52.23 SS G_CDS: 1.47 Total: -50.76 kcal Atomic # 8 Polarization: 1.15 SS G_CDS: 0.20 Total: 1.36 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: 6.25 SS G_CDS: -2.55 Total: 3.70 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -33.07 -7.66 -40.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896870688.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.760 kcal (2) G-P(sol) polarization free energy of solvation -33.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds