Wall clock time and date at job start Tue Mar 31 2020 01:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48508 * 109.47141 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47494 * 299.99834 * 3 2 1 6 6 H 1.48505 * 109.47047 * 60.00014 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46623 * 179.97438 * 10 9 7 12 12 C 1.50706 * 109.46953 * 179.97438 * 11 10 9 13 13 N 1.31126 * 126.55163 * 89.99777 * 12 11 10 14 14 C 1.34489 * 105.61796 * 180.02562 * 13 12 11 15 15 C 1.50706 * 126.29168 * 180.02562 * 14 13 12 16 16 C 1.50704 * 109.46736 * 90.00249 * 15 14 13 17 17 C 1.38125 * 123.88405 * 124.72854 * 16 15 14 18 18 N 1.30410 * 112.22857 * 179.85179 * 17 16 15 19 19 S 1.56002 * 108.39823 * 0.39422 * 18 17 16 20 20 N 1.30412 * 123.88764 * 305.02900 * 16 15 14 21 21 N 1.29945 * 107.42474 * 0.02562 * 14 13 12 22 22 O 1.21304 * 110.24804 * 359.69841 * 21 14 13 23 23 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 24 24 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 25 25 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 26 26 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 27 27 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 28 28 H 1.09000 * 109.47486 * 299.99829 * 11 10 9 29 29 H 1.09001 * 109.47362 * 60.00551 * 11 10 9 30 30 H 1.08997 * 109.47377 * 210.00101 * 15 14 13 31 31 H 1.09001 * 109.46773 * 330.00608 * 15 14 13 32 32 H 1.08010 * 123.88196 * 359.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4804 -4.9870 0.0001 12 6 2.4598 -6.1325 -0.0005 13 7 2.9680 -6.7260 1.0525 14 6 3.7844 -7.6804 0.5715 15 6 4.6082 -8.6437 1.3868 16 6 3.8030 -9.8883 1.6583 17 6 4.2251 -11.1637 1.3377 18 7 3.3525 -12.0719 1.6763 19 16 2.1251 -11.3585 2.3231 20 7 2.6250 -9.8845 2.2180 21 7 3.7324 -7.6195 -0.7255 22 8 2.9727 -6.7405 -1.0744 23 1 -0.4850 0.8400 -0.0004 24 1 0.6241 -2.5568 -0.8902 25 1 0.6248 -2.5571 0.8897 26 1 2.8721 -3.6043 -0.8905 27 1 2.8721 -3.6042 0.8895 28 1 0.8541 -5.0446 0.8903 29 1 0.8535 -5.0451 -0.8897 30 1 5.5102 -8.9078 0.8349 31 1 4.8842 -8.1760 2.3319 32 1 5.1700 -11.3838 0.8632 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000896870688.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:56:59 Heat of formation + Delta-G solvation = 84.763564 kcal Electronic energy + Delta-G solvation = -18183.022356 eV Core-core repulsion = 15079.721682 eV Total energy + Delta-G solvation = -3103.300674 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.073 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -46.59376 -41.89017 -37.32058 -36.77534 -35.05324 -34.47377 -33.11894 -31.29286 -29.45224 -26.70817 -26.01577 -24.50355 -22.93444 -22.11076 -21.64293 -20.31525 -19.07599 -18.68131 -18.24379 -16.89654 -16.77554 -16.56641 -16.06758 -15.79583 -15.25202 -14.96825 -14.41640 -14.14488 -13.88633 -13.66108 -13.10975 -12.90788 -12.82235 -12.63068 -12.54158 -12.42130 -12.13078 -12.01753 -11.91574 -11.89325 -11.55323 -11.47708 -11.25453 -10.80180 -10.52032 -10.01899 -8.17642 -6.27142 -0.33823 0.07829 0.55269 0.74279 1.00206 1.27515 1.42145 1.43341 1.55547 1.80155 2.43693 2.65858 2.97163 3.16641 3.44793 3.83907 3.92321 4.10730 4.19742 4.22541 4.42730 4.55224 4.66595 4.71061 4.84601 4.87847 5.02236 5.03378 5.20329 5.54867 5.62607 5.76361 5.88424 6.27495 6.89428 7.10889 7.41718 8.94123 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.042483 B = 0.002754 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.927281 B =10165.908953 C =10378.356730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.002 3.998 3 Si 0.960 3.040 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.280 1.280 7 C -0.542 4.542 8 H 0.057 0.943 9 C 0.025 3.975 10 C -0.090 4.090 11 C -0.022 4.022 12 C 0.203 3.797 13 N -0.496 5.496 14 C 0.175 3.825 15 C 0.060 3.940 16 C 0.051 3.949 17 C 0.054 3.946 18 N -0.592 5.592 19 S 0.696 5.304 20 N -0.591 5.591 21 N -0.400 5.400 22 O 0.063 5.937 23 H 0.263 0.737 24 H 0.007 0.993 25 H 0.002 0.998 26 H 0.059 0.941 27 H 0.052 0.948 28 H 0.112 0.888 29 H 0.117 0.883 30 H 0.155 0.845 31 H 0.130 0.870 32 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.337 -23.137 2.985 24.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.785 3.215 4 H -0.188 1.188 5 H -0.204 1.204 6 H -0.205 1.205 7 C -0.580 4.580 8 H 0.075 0.925 9 C -0.012 4.012 10 C -0.128 4.128 11 C -0.061 4.061 12 C -0.017 4.017 13 N -0.229 5.229 14 C -0.099 4.099 15 C 0.017 3.983 16 C -0.124 4.124 17 C -0.140 4.140 18 N -0.434 5.434 19 S 0.741 5.259 20 N -0.436 5.436 21 N -0.111 5.111 22 O 0.008 5.992 23 H 0.072 0.928 24 H 0.025 0.975 25 H 0.020 0.980 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.130 0.870 29 H 0.135 0.865 30 H 0.173 0.827 31 H 0.147 0.853 32 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 6.876 -24.494 3.694 25.708 hybrid contribution 1.370 1.893 -0.688 2.435 sum 8.246 -22.602 3.006 24.246 Atomic orbital electron populations 1.70076 1.07563 1.27665 1.51779 1.25890 0.95741 1.03074 0.94900 0.85475 0.79083 0.79218 0.77733 1.18840 1.20392 1.20532 1.21699 0.93506 0.92470 1.50316 0.92458 1.18999 0.94230 0.91986 0.96013 1.21417 0.98385 0.91706 1.01335 1.20452 0.93112 0.85737 1.06820 1.29226 0.96214 0.96142 0.80070 1.71972 1.12435 1.09330 1.29206 1.25980 0.98346 0.97320 0.88283 1.18624 0.93917 0.85170 1.00599 1.22406 0.91622 0.97908 1.00513 1.24198 1.02569 0.85882 1.01315 1.72433 1.10477 1.39242 1.21214 1.79011 1.20646 0.84581 1.41673 1.72180 1.17718 1.30441 1.23227 1.74568 1.12087 1.08399 1.16033 1.85265 1.42959 1.34763 1.36203 0.92774 0.97504 0.98002 0.92263 0.92940 0.86986 0.86515 0.82702 0.85251 0.74092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.13 13.29 21.45 0.28 -54.85 16 2 C 0.00 0.11 5.46 84.65 0.46 0.57 16 3 Si 0.96 43.59 29.54 68.60 2.03 45.62 16 4 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 5 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 6 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 7 C -0.54 -29.92 9.11 25.60 0.23 -29.69 16 8 H 0.06 3.07 7.74 -2.91 -0.02 3.05 16 9 C 0.02 1.22 4.97 29.85 0.15 1.37 16 10 C -0.09 -3.42 5.14 30.60 0.16 -3.26 16 11 C -0.02 -0.68 5.84 29.85 0.17 -0.51 16 12 C 0.20 6.29 7.77 88.38 0.69 6.98 16 13 N -0.50 -15.65 11.55 -303.21 -3.50 -19.16 16 14 C 0.17 4.67 7.38 138.47 1.02 5.69 16 15 C 0.06 1.00 6.38 29.10 0.19 1.19 16 16 C 0.05 0.95 6.17 42.74 0.26 1.21 16 17 C 0.05 0.78 11.39 84.88 0.97 1.75 16 18 N -0.59 -10.65 11.45 -93.98 -1.08 -11.73 16 19 S 0.70 12.22 23.71 -56.49 -1.34 10.88 16 20 N -0.59 -13.61 11.34 -82.10 -0.93 -14.54 16 21 N -0.40 -11.60 12.16 -60.32 -0.73 -12.33 16 22 O 0.06 1.93 11.31 74.87 0.85 2.78 16 23 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 24 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 25 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 26 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 27 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.11 3.33 8.14 -2.39 -0.02 3.31 16 29 H 0.12 3.12 8.14 -2.39 -0.02 3.10 16 30 H 0.16 1.33 8.07 -2.39 -0.02 1.31 16 31 H 0.13 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.24 1.34 8.06 -2.91 -0.02 1.32 16 Total: -1.00 -70.70 304.45 1.02 -69.68 By element: Atomic # 1 Polarization: -2.79 SS G_CDS: 1.15 Total: -1.65 kcal Atomic # 6 Polarization: -19.01 SS G_CDS: 4.30 Total: -14.71 kcal Atomic # 7 Polarization: -106.65 SS G_CDS: -5.96 Total: -112.61 kcal Atomic # 8 Polarization: 1.93 SS G_CDS: 0.85 Total: 2.78 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 16 Polarization: 12.22 SS G_CDS: -1.34 Total: 10.88 kcal Total: -70.70 1.02 -69.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896870688.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.440 kcal (2) G-P(sol) polarization free energy of solvation -70.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds