Wall clock time and date at job start Tue Mar 31 2020 01:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46657 * 131.45285 * 3 2 1 5 5 C 1.36939 * 119.99938 * 268.76649 * 4 3 2 6 6 H 1.08001 * 119.99978 * 322.08294 * 5 4 3 7 7 C 1.38811 * 119.99822 * 142.07816 * 5 4 3 8 8 N 1.31620 * 119.99667 * 156.98353 * 7 5 4 9 9 Si 1.86794 * 120.00272 * 336.98476 * 7 5 4 10 10 H 1.48498 * 109.47218 * 95.69743 * 9 7 5 11 11 H 1.48504 * 109.47401 * 215.70315 * 9 7 5 12 12 H 1.48504 * 109.47010 * 335.69750 * 9 7 5 13 13 C 1.46497 * 120.00245 * 88.77457 * 4 3 2 14 14 C 1.50701 * 109.47360 * 89.99461 * 13 4 3 15 15 N 1.29391 * 124.70310 * 89.97976 * 14 13 4 16 16 C 1.30917 * 117.46707 * 180.02562 * 15 14 13 17 17 C 1.36756 * 113.92898 * 359.97438 * 16 15 14 18 18 C 1.46505 * 126.17777 * 179.97438 * 17 16 15 19 19 O 1.21616 * 119.99994 * 180.02562 * 18 17 16 20 20 O 1.34879 * 119.99762 * 0.03179 * 18 17 16 21 21 C 1.45206 * 116.99801 * 179.97438 * 20 18 17 22 22 S 1.70924 * 124.70640 * 269.99880 * 14 13 4 23 23 H 4.40638 * 5.51397 * 179.97438 * 4 1 2 24 24 H 1.09000 * 109.47768 * 11.45354 * 3 2 1 25 25 H 1.09000 * 109.47277 * 251.44388 * 3 2 1 26 26 H 0.97002 * 119.99912 * 179.97438 * 8 7 5 27 27 H 1.09004 * 109.47255 * 329.99557 * 13 4 3 28 28 H 1.08995 * 109.47124 * 209.99557 * 13 4 3 29 29 H 1.07997 * 123.03803 * 179.72957 * 16 15 14 30 30 H 1.09006 * 109.47177 * 300.00289 * 21 20 18 31 31 H 1.08997 * 109.46900 * 59.99920 * 21 20 18 32 32 H 1.08994 * 109.47313 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 0.9153 -1.0353 5 6 3.3863 0.4485 -2.2976 6 1 3.8225 -0.5300 -2.4343 7 6 3.0814 1.2329 -3.4015 8 7 3.7009 1.0291 -4.5449 9 14 1.7922 2.5776 -3.2645 10 1 2.4583 3.8758 -2.9886 11 1 1.0359 2.6702 -4.5392 12 1 0.8571 2.2557 -2.1566 13 6 3.3518 2.3293 -0.7200 14 6 4.7659 2.5241 -0.2369 15 7 5.7749 2.7930 -1.0009 16 6 6.9444 2.9335 -0.4295 17 6 6.9216 2.7706 0.9281 18 6 8.0718 2.8684 1.8303 19 8 7.9229 2.7016 3.0257 20 8 9.2958 3.1435 1.3350 21 6 10.3890 3.2260 2.2872 22 16 5.2593 2.4201 1.3963 23 1 -1.0501 -0.0004 0.0001 24 1 3.0099 -1.0063 -0.2041 25 1 3.0092 0.3279 0.9742 26 1 3.4876 1.5770 -5.3164 27 1 2.6556 2.6393 0.0593 28 1 3.1873 2.9304 -1.6142 29 1 7.8464 3.1541 -0.9810 30 1 10.1818 4.0144 3.0109 31 1 10.4906 2.2733 2.8070 32 1 11.3149 3.4526 1.7588 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897164391.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:34:00 Heat of formation + Delta-G solvation = 50.944796 kcal Electronic energy + Delta-G solvation = -18865.594916 eV Core-core repulsion = 15728.534999 eV Total energy + Delta-G solvation = -3137.059917 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.29052 -39.13371 -36.56524 -36.34703 -32.74432 -31.88590 -30.72446 -28.52568 -27.14458 -26.48755 -24.23991 -22.20466 -21.79519 -19.85567 -18.11446 -17.67902 -17.38224 -16.68419 -16.38766 -16.33795 -15.34189 -14.92835 -14.37126 -13.98423 -13.78889 -13.64764 -13.32489 -13.09354 -12.82643 -12.43357 -12.29011 -12.00085 -11.45370 -11.24174 -10.87935 -10.83224 -10.76935 -10.29802 -9.86524 -9.85205 -9.52955 -9.19465 -9.11905 -8.73016 -8.58415 -7.35290 -6.22094 -3.64311 0.41260 1.36968 2.01486 2.48079 2.91967 3.19144 3.25041 3.35977 3.40873 3.45291 3.46556 4.34747 4.49779 4.85587 4.93535 4.98634 5.00484 5.05866 5.22889 5.35209 5.46250 5.52699 5.75268 5.94275 6.15420 6.24214 6.30099 6.40333 6.55232 7.70466 7.71501 8.08315 8.16041 8.25946 8.62766 9.41906 9.71131 10.90899 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.022762 B = 0.005302 C = 0.004644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.817768 B = 5279.928890 C = 6027.912672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.171 4.171 3 C 0.238 3.762 4 N -0.571 5.571 5 C -0.277 4.277 6 H 0.086 0.914 7 C 0.057 3.943 8 N -0.870 5.870 9 Si 0.863 3.137 10 H -0.278 1.278 11 H -0.294 1.294 12 H -0.259 1.259 13 C 0.190 3.810 14 C 0.083 3.917 15 N -0.469 5.469 16 C 0.145 3.855 17 C -0.335 4.335 18 C 0.554 3.446 19 O -0.517 6.517 20 O -0.351 6.351 21 C 0.039 3.961 22 S 0.176 5.824 23 H 0.206 0.794 24 H 0.087 0.913 25 H 0.067 0.933 26 H 0.269 0.731 27 H 0.073 0.927 28 H 0.093 0.907 29 H 0.183 0.817 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.420 4.207 11.548 13.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C -0.174 4.174 3 C 0.113 3.887 4 N -0.290 5.290 5 C -0.406 4.406 6 H 0.104 0.896 7 C -0.148 4.148 8 N -0.508 5.508 9 Si 0.692 3.308 10 H -0.206 1.206 11 H -0.221 1.221 12 H -0.183 1.183 13 C 0.060 3.940 14 C -0.193 4.193 15 N -0.183 5.183 16 C -0.017 4.017 17 C -0.458 4.458 18 C 0.399 3.601 19 O -0.407 6.407 20 O -0.268 6.268 21 C -0.055 4.055 22 S 0.435 5.565 23 H 0.223 0.777 24 H 0.105 0.895 25 H 0.085 0.915 26 H 0.079 0.921 27 H 0.091 0.909 28 H 0.110 0.890 29 H 0.200 0.800 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 4.742 3.997 12.103 13.599 hybrid contribution 0.191 0.899 -0.556 1.074 sum 4.933 4.897 11.546 13.477 Atomic orbital electron populations 1.24719 0.95787 1.02719 1.03003 1.24749 0.95846 0.98611 0.98171 1.18214 0.82295 0.96116 0.92075 1.44204 1.71140 1.04285 1.09327 1.18762 1.37625 1.04547 0.79644 0.89641 1.25408 0.96657 0.97843 0.94939 1.69862 1.38444 1.40144 1.02308 0.87125 0.83758 0.82040 0.77920 1.20570 1.22083 1.18317 1.20440 0.84849 0.88493 1.00172 1.29706 1.02744 0.95477 0.91372 1.66196 0.98228 1.16646 1.37210 1.22772 0.96534 0.93124 0.89307 1.24671 0.97049 1.26157 0.97898 1.19450 0.81988 0.72709 0.85956 1.90866 1.85675 1.47770 1.16396 1.86586 1.16937 1.82122 1.41163 1.23266 0.86935 1.02506 0.92790 1.83826 0.97598 1.63582 1.11454 0.77725 0.89537 0.91458 0.92119 0.90910 0.89002 0.80012 0.91915 0.91852 0.87955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -4.18 19.25 29.55 0.57 -3.61 16 2 C -0.17 -3.22 13.68 -37.12 -0.51 -3.73 16 3 C 0.24 4.41 6.14 -6.83 -0.04 4.36 16 4 N -0.57 -12.60 2.01 -177.95 -0.36 -12.95 16 5 C -0.28 -7.26 9.90 -15.06 -0.15 -7.41 16 6 H 0.09 2.43 8.06 -52.49 -0.42 2.00 16 7 C 0.06 1.54 5.29 -17.43 -0.09 1.45 16 8 N -0.87 -25.29 13.97 55.49 0.78 -24.52 16 9 Si 0.86 20.84 25.10 -169.99 -4.27 16.58 16 10 H -0.28 -6.55 6.68 56.52 0.38 -6.17 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 12 H -0.26 -6.11 7.11 56.52 0.40 -5.71 16 13 C 0.19 3.89 5.09 -5.19 -0.03 3.87 16 14 C 0.08 1.61 6.96 -13.31 -0.09 1.52 16 15 N -0.47 -9.64 10.50 -11.26 -0.12 -9.76 16 16 C 0.15 2.50 11.20 -18.48 -0.21 2.30 16 17 C -0.34 -5.60 6.51 -36.79 -0.24 -5.84 16 18 C 0.55 8.82 7.92 34.06 0.27 9.08 16 19 O -0.52 -9.06 16.76 -19.35 -0.32 -9.39 16 20 O -0.35 -4.71 10.37 -40.98 -0.42 -5.13 16 21 C 0.04 0.37 10.57 101.05 1.07 1.43 16 22 S 0.18 2.89 23.00 -107.50 -2.47 0.42 16 23 H 0.21 2.72 7.80 -54.08 -0.42 2.30 16 24 H 0.09 1.56 8.03 -51.93 -0.42 1.14 16 25 H 0.07 1.06 8.08 -51.93 -0.42 0.64 16 26 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 27 H 0.07 1.27 8.07 -51.93 -0.42 0.85 16 28 H 0.09 2.09 3.38 -51.93 -0.18 1.92 16 29 H 0.18 2.62 8.06 -52.49 -0.42 2.20 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 309.32 15.07 4.66 4.66 Total: -1.00 -31.61 309.32 -5.10 -36.71 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: -3.13 Total: -0.06 kcal Atomic # 6 Polarization: 2.89 SS G_CDS: 0.55 Total: 3.44 kcal Atomic # 7 Polarization: -47.53 SS G_CDS: 0.30 Total: -47.23 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: -0.75 Total: -14.52 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.27 Total: 16.58 kcal Atomic # 16 Polarization: 2.89 SS G_CDS: -2.47 Total: 0.42 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.61 -5.10 -36.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897164391.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.659 kcal (2) G-P(sol) polarization free energy of solvation -31.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.714 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds