Wall clock time and date at job start Tue Mar 31 2020 01:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46657 * 131.45285 * 3 2 1 5 5 C 1.36939 * 119.99938 * 268.76649 * 4 3 2 6 6 H 1.08001 * 119.99978 * 322.08294 * 5 4 3 7 7 C 1.38811 * 119.99822 * 142.07816 * 5 4 3 8 8 N 1.31620 * 119.99667 * 156.98353 * 7 5 4 9 9 Si 1.86794 * 120.00272 * 336.98476 * 7 5 4 10 10 H 1.48498 * 109.47218 * 95.69743 * 9 7 5 11 11 H 1.48504 * 109.47401 * 215.70315 * 9 7 5 12 12 H 1.48504 * 109.47010 * 335.69750 * 9 7 5 13 13 C 1.46497 * 120.00245 * 88.77457 * 4 3 2 14 14 C 1.50701 * 109.47360 * 89.99461 * 13 4 3 15 15 N 1.29391 * 124.70310 * 89.97976 * 14 13 4 16 16 C 1.30917 * 117.46707 * 180.02562 * 15 14 13 17 17 C 1.36756 * 113.92898 * 359.97438 * 16 15 14 18 18 C 1.46505 * 126.17777 * 179.97438 * 17 16 15 19 19 O 1.21616 * 119.99994 * 180.02562 * 18 17 16 20 20 O 1.34879 * 119.99762 * 0.03179 * 18 17 16 21 21 C 1.45206 * 116.99801 * 179.97438 * 20 18 17 22 22 S 1.70924 * 124.70640 * 269.99880 * 14 13 4 23 23 H 4.40638 * 5.51397 * 179.97438 * 4 1 2 24 24 H 1.09000 * 109.47768 * 11.45354 * 3 2 1 25 25 H 1.09000 * 109.47277 * 251.44388 * 3 2 1 26 26 H 0.97002 * 119.99912 * 179.97438 * 8 7 5 27 27 H 1.09004 * 109.47255 * 329.99557 * 13 4 3 28 28 H 1.08995 * 109.47124 * 209.99557 * 13 4 3 29 29 H 1.07997 * 123.03803 * 179.72957 * 16 15 14 30 30 H 1.09006 * 109.47177 * 300.00289 * 21 20 18 31 31 H 1.08997 * 109.46900 * 59.99920 * 21 20 18 32 32 H 1.08994 * 109.47313 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1338 0.9153 -1.0353 5 6 3.3863 0.4485 -2.2976 6 1 3.8225 -0.5300 -2.4343 7 6 3.0814 1.2329 -3.4015 8 7 3.7009 1.0291 -4.5449 9 14 1.7922 2.5776 -3.2645 10 1 2.4583 3.8758 -2.9886 11 1 1.0359 2.6702 -4.5392 12 1 0.8571 2.2557 -2.1566 13 6 3.3518 2.3293 -0.7200 14 6 4.7659 2.5241 -0.2369 15 7 5.7749 2.7930 -1.0009 16 6 6.9444 2.9335 -0.4295 17 6 6.9216 2.7706 0.9281 18 6 8.0718 2.8684 1.8303 19 8 7.9229 2.7016 3.0257 20 8 9.2958 3.1435 1.3350 21 6 10.3890 3.2260 2.2872 22 16 5.2593 2.4201 1.3963 23 1 -1.0501 -0.0004 0.0001 24 1 3.0099 -1.0063 -0.2041 25 1 3.0092 0.3279 0.9742 26 1 3.4876 1.5770 -5.3164 27 1 2.6556 2.6393 0.0593 28 1 3.1873 2.9304 -1.6142 29 1 7.8464 3.1541 -0.9810 30 1 10.1818 4.0144 3.0109 31 1 10.4906 2.2733 2.8070 32 1 11.3149 3.4526 1.7588 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897164391.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:33:59 Heat of formation + Delta-G solvation = 30.544771 kcal Electronic energy + Delta-G solvation = -18866.479527 eV Core-core repulsion = 15728.534999 eV Total energy + Delta-G solvation = -3137.944529 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.51636 -40.55858 -38.16919 -37.53239 -34.36422 -33.58344 -32.17534 -29.86398 -28.31830 -28.02168 -25.74663 -23.68296 -23.31608 -21.20062 -19.61679 -19.05267 -18.87083 -18.17879 -17.59721 -17.50103 -17.11702 -16.46002 -15.76555 -15.49497 -15.17081 -14.95904 -14.84484 -14.36788 -14.32511 -14.14727 -13.58146 -13.18337 -13.11389 -12.64943 -12.55831 -12.25956 -11.98614 -11.86427 -11.75506 -11.30658 -10.90746 -10.74945 -10.58183 -10.51236 -9.97684 -9.14318 -8.24868 -5.68141 -0.95390 0.01922 0.58607 1.14642 1.29002 1.40675 1.50709 1.80434 1.86577 2.04442 2.09256 2.38652 2.96256 3.20194 3.42634 3.72382 3.76862 4.01735 4.16773 4.26702 4.29657 4.34158 4.52738 4.56829 4.70672 4.85235 5.00602 5.14649 5.26135 5.83353 6.11361 6.50531 6.72551 6.77473 6.91132 7.46728 7.82729 8.93188 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.022762 B = 0.005302 C = 0.004644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.817768 B = 5279.928890 C = 6027.912672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.216 4.216 3 C 0.237 3.763 4 N -0.585 5.585 5 C -0.266 4.266 6 H 0.047 0.953 7 C 0.005 3.995 8 N -0.929 5.929 9 Si 0.921 3.079 10 H -0.272 1.272 11 H -0.304 1.304 12 H -0.247 1.247 13 C 0.189 3.811 14 C 0.060 3.940 15 N -0.506 5.506 16 C 0.139 3.861 17 C -0.335 4.335 18 C 0.559 3.441 19 O -0.534 6.534 20 O -0.351 6.351 21 C 0.030 3.970 22 S 0.250 5.750 23 H 0.241 0.759 24 H 0.081 0.919 25 H 0.096 0.904 26 H 0.265 0.735 27 H 0.105 0.895 28 H 0.067 0.933 29 H 0.205 0.795 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.561 5.312 14.330 16.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.218 4.218 3 C 0.113 3.887 4 N -0.305 5.305 5 C -0.395 4.395 6 H 0.065 0.935 7 C -0.194 4.194 8 N -0.570 5.570 9 Si 0.749 3.251 10 H -0.200 1.200 11 H -0.232 1.232 12 H -0.170 1.170 13 C 0.060 3.940 14 C -0.215 4.215 15 N -0.221 5.221 16 C -0.023 4.023 17 C -0.458 4.458 18 C 0.404 3.596 19 O -0.425 6.425 20 O -0.268 6.268 21 C -0.063 4.063 22 S 0.509 5.491 23 H 0.257 0.743 24 H 0.099 0.901 25 H 0.114 0.886 26 H 0.074 0.926 27 H 0.123 0.877 28 H 0.085 0.915 29 H 0.222 0.778 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 4.888 5.106 14.927 16.516 hybrid contribution 0.361 0.594 -1.118 1.316 sum 5.249 5.700 13.809 15.834 Atomic orbital electron populations 1.25597 0.96747 1.00703 1.01044 1.24915 0.96467 1.00464 0.99986 1.18284 0.82723 0.95369 0.92298 1.44157 1.72746 1.04983 1.08599 1.18500 1.36128 1.03139 0.81760 0.93505 1.25936 0.98414 1.00400 0.94669 1.69983 1.41158 1.42604 1.03270 0.86195 0.81496 0.80007 0.77427 1.19959 1.23239 1.17001 1.20326 0.86336 0.87090 1.00249 1.29298 1.02095 0.96617 0.93538 1.66212 0.99475 1.17364 1.39028 1.23040 0.96421 0.93142 0.89696 1.25031 0.97992 1.24673 0.98093 1.19302 0.82628 0.72352 0.85332 1.90864 1.86113 1.48616 1.16957 1.86581 1.16689 1.81248 1.42236 1.23676 0.86656 1.02953 0.93023 1.83506 0.96643 1.61188 1.07795 0.74301 0.90052 0.88600 0.92597 0.87661 0.91524 0.77846 0.91373 0.91627 0.84476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -6.99 19.25 74.32 1.43 -5.56 16 2 C -0.22 -7.73 13.68 31.13 0.43 -7.30 16 3 C 0.24 8.55 6.14 84.57 0.52 9.07 16 4 N -0.58 -25.66 2.01 -716.90 -1.44 -27.10 16 5 C -0.27 -14.40 9.90 84.03 0.83 -13.57 16 6 H 0.05 2.84 8.06 -2.91 -0.02 2.81 16 7 C 0.01 0.29 5.29 84.86 0.45 0.74 16 8 N -0.93 -56.72 13.97 21.65 0.30 -56.42 16 9 Si 0.92 44.08 25.10 68.60 1.72 45.80 16 10 H -0.27 -12.57 6.68 99.48 0.66 -11.91 16 11 H -0.30 -14.85 7.11 99.48 0.71 -14.14 16 12 H -0.25 -11.09 7.11 99.48 0.71 -10.38 16 13 C 0.19 7.52 5.09 85.63 0.44 7.96 16 14 C 0.06 2.24 6.96 88.47 0.62 2.86 16 15 N -0.51 -20.47 10.50 -189.53 -1.99 -22.46 16 16 C 0.14 4.57 11.20 84.48 0.95 5.51 16 17 C -0.34 -10.41 6.51 24.08 0.16 -10.25 16 18 C 0.56 16.29 7.92 69.98 0.55 16.85 16 19 O -0.53 -17.25 16.76 19.46 0.33 -16.92 16 20 O -0.35 -8.41 10.37 -57.93 -0.60 -9.01 16 21 C 0.03 0.46 10.57 113.37 1.20 1.66 16 22 S 0.25 7.49 23.00 -56.49 -1.30 6.19 16 23 H 0.24 5.38 7.80 -4.41 -0.03 5.35 16 24 H 0.08 2.95 8.03 -2.39 -0.02 2.93 16 25 H 0.10 2.81 8.08 -2.39 -0.02 2.79 16 26 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 27 H 0.11 3.40 8.07 -2.39 -0.02 3.38 16 28 H 0.07 3.00 3.38 -2.39 -0.01 2.99 16 29 H 0.20 5.54 8.06 -2.91 -0.02 5.52 16 30 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 31 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.14 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -70.55 309.32 5.69 -64.86 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: 1.10 Total: 7.11 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: 7.56 Total: 7.96 kcal Atomic # 7 Polarization: -102.86 SS G_CDS: -3.13 Total: -105.99 kcal Atomic # 8 Polarization: -25.66 SS G_CDS: -0.27 Total: -25.93 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 1.72 Total: 45.80 kcal Atomic # 16 Polarization: 7.49 SS G_CDS: -1.30 Total: 6.19 kcal Total: -70.55 5.69 -64.86 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897164391.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.406 kcal (2) G-P(sol) polarization free energy of solvation -70.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds