Wall clock time and date at job start Tue Mar 31 2020 02:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 5 5 H 1.07995 * 119.99755 * 240.00383 * 4 2 1 6 6 C 1.37873 * 119.99729 * 60.00006 * 4 2 1 7 7 N 1.31516 * 119.99909 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99980 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46755 * 90.00221 * 8 6 4 10 10 H 1.48498 * 109.46866 * 210.00208 * 8 6 4 11 11 H 1.48496 * 109.47178 * 330.00271 * 8 6 4 12 12 N 1.46506 * 109.47289 * 119.99984 * 2 1 3 13 13 N 1.39509 * 119.11875 * 59.99852 * 12 2 1 14 14 C 1.29982 * 122.67642 * 180.02562 * 13 12 2 15 15 C 1.46272 * 120.00052 * 0.02562 * 14 13 12 16 16 C 1.39768 * 121.82918 * 180.02562 * 15 14 13 17 17 F 1.35096 * 120.20959 * 359.97438 * 16 15 14 18 18 C 1.37969 * 119.57461 * 179.97438 * 16 15 14 19 19 C 1.38765 * 120.77896 * 359.97438 * 18 16 15 20 20 C 1.38053 * 120.70753 * 359.97438 * 19 18 16 21 21 F 1.35099 * 120.23814 * 180.02562 * 20 19 18 22 22 C 1.39627 * 119.52697 * 0.02562 * 20 19 18 23 23 C 1.34923 * 119.12159 * 239.73454 * 12 2 1 24 24 O 1.21829 * 120.61730 * 359.97438 * 23 12 2 25 25 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 26 26 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 27 27 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 28 28 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 29 29 H 1.07996 * 120.00705 * 179.97438 * 14 13 12 30 30 H 1.07996 * 119.60700 * 180.02562 * 18 16 15 31 31 H 1.08004 * 119.64482 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.3447 -2.1617 -4.4123 10 1 2.4872 -0.1403 -5.1120 11 1 3.6308 -1.7567 -3.7120 12 7 2.0184 -0.6906 1.1962 13 7 1.6701 -2.0263 1.3987 14 6 2.0642 -2.7049 2.4349 15 6 2.9074 -2.0700 3.4475 16 6 3.3532 -2.7637 4.5760 17 9 3.0086 -4.0571 4.7590 18 6 4.1475 -2.1191 5.5019 19 6 4.5089 -0.7910 5.3253 20 6 4.0818 -0.0853 4.2184 21 9 4.4398 1.2072 4.0557 22 6 3.2772 -0.7169 3.2680 23 6 2.7973 -0.0195 2.0698 24 8 3.0931 1.1453 1.8696 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 0.7089 1.1613 -3.4844 29 1 1.7684 -3.7373 2.5488 30 1 4.4926 -2.6547 6.3738 31 1 5.1317 -0.3045 6.0615 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000899350171.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:20:39 Heat of formation + Delta-G solvation = -50.266951 kcal Electronic energy + Delta-G solvation = -21518.434707 eV Core-core repulsion = 17823.145532 eV Total energy + Delta-G solvation = -3695.289174 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.076 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.16225 -48.93137 -40.47224 -38.12724 -36.60675 -34.42908 -32.19914 -30.95461 -30.30039 -28.92952 -25.32746 -24.91712 -24.13708 -21.95865 -21.31531 -18.72049 -18.59604 -17.70689 -16.97836 -16.45970 -16.17148 -16.03319 -15.48317 -15.36723 -14.87058 -14.70890 -14.56433 -14.35276 -13.60093 -13.07326 -12.77747 -12.55602 -12.41830 -12.10198 -12.01680 -11.61272 -11.27684 -10.93991 -10.89470 -10.75817 -10.25932 -10.23970 -9.64554 -9.24499 -9.18996 -8.91071 -8.51404 -7.83137 -6.15195 -4.22384 0.28559 0.46753 2.17099 2.66384 2.80332 3.26183 3.32193 3.36521 3.72695 3.77749 3.86518 4.10690 4.26957 4.34837 4.38176 4.59337 5.12144 5.17908 5.28284 5.40130 5.59345 5.72585 5.88555 6.19824 6.41801 6.59988 6.75241 6.87994 6.94915 7.47006 7.66598 7.85918 8.03130 8.24944 8.54704 8.79876 9.42244 10.90941 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.023084 B = 0.005525 C = 0.004946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.676924 B = 5066.328849 C = 5659.500748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.268 3.732 3 H 0.079 0.921 4 C -0.521 4.521 5 H 0.063 0.937 6 C 0.065 3.935 7 N -0.889 5.889 8 Si 0.906 3.094 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.274 1.274 12 N -0.389 5.389 13 N -0.173 5.173 14 C 0.055 3.945 15 C -0.055 4.055 16 C 0.100 3.900 17 F -0.125 7.125 18 C -0.100 4.100 19 C -0.138 4.138 20 C 0.158 3.842 21 F -0.108 7.108 22 C -0.143 4.143 23 C 0.517 3.483 24 O -0.509 6.509 25 H 0.100 0.900 26 H 0.011 0.989 27 H 0.043 0.957 28 H 0.266 0.734 29 H 0.194 0.806 30 H 0.152 0.848 31 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.328 -7.410 15.967 18.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.171 3.829 3 H 0.097 0.903 4 C -0.559 4.559 5 H 0.081 0.919 6 C -0.137 4.137 7 N -0.527 5.527 8 Si 0.733 3.267 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.199 1.199 12 N -0.208 5.208 13 N 0.018 4.982 14 C -0.149 4.149 15 C -0.060 4.060 16 C 0.078 3.922 17 F -0.103 7.103 18 C -0.120 4.120 19 C -0.158 4.158 20 C 0.137 3.863 21 F -0.086 7.086 22 C -0.151 4.151 23 C 0.306 3.694 24 O -0.384 6.384 25 H 0.119 0.881 26 H 0.030 0.970 27 H 0.062 0.938 28 H 0.076 0.924 29 H 0.210 0.790 30 H 0.170 0.830 31 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 3.860 -6.529 14.757 16.592 hybrid contribution 0.824 -0.406 -0.064 0.921 sum 4.684 -6.935 14.694 16.910 Atomic orbital electron populations 1.22078 0.96600 1.00679 1.01017 1.19464 0.92301 0.93248 0.77912 0.90330 1.21175 1.32308 1.12916 0.89520 0.91863 1.24870 0.94856 0.94973 0.99016 1.69864 1.36200 1.22494 1.24123 0.86366 0.79234 0.79236 0.81838 1.20361 1.21006 1.19917 1.50183 1.42491 1.05138 1.22972 1.74518 1.13335 0.93408 1.16959 1.24809 0.98886 1.00866 0.90307 1.19702 0.98321 0.92552 0.95448 1.17298 0.99970 0.79518 0.95411 1.91525 1.90541 1.33266 1.94998 1.21023 0.97235 0.94402 0.99299 1.20995 1.02844 0.94289 0.97667 1.17363 0.95233 0.79704 0.93975 1.91621 1.89075 1.32789 1.95137 1.20269 1.02813 0.94109 0.97920 1.18238 0.80626 0.87238 0.83293 1.90925 1.56865 1.15061 1.75597 0.88129 0.97013 0.93761 0.92427 0.78970 0.83011 0.82895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 9.08 37.16 0.34 -3.23 16 2 C 0.27 7.03 2.68 -69.08 -0.18 6.85 16 3 H 0.08 2.30 6.85 -51.93 -0.36 1.94 16 4 C -0.52 -14.41 8.55 -34.44 -0.29 -14.70 16 5 H 0.06 1.77 7.81 -52.49 -0.41 1.35 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 7 N -0.89 -24.95 11.32 55.43 0.63 -24.32 16 8 Si 0.91 21.27 29.54 -169.99 -5.02 16.25 16 9 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 11 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 12 N -0.39 -9.01 3.28 -56.16 -0.18 -9.20 16 13 N -0.17 -3.46 10.67 31.91 0.34 -3.12 16 14 C 0.05 0.84 11.17 -15.11 -0.17 0.67 16 15 C -0.05 -0.80 5.89 -104.89 -0.62 -1.42 16 16 C 0.10 1.13 7.30 -39.11 -0.29 0.84 16 17 F -0.12 -1.31 16.77 2.25 0.04 -1.27 16 18 C -0.10 -0.90 9.99 -39.48 -0.39 -1.29 16 19 C -0.14 -1.39 9.99 -39.45 -0.39 -1.79 16 20 C 0.16 2.36 7.29 -39.13 -0.29 2.08 16 21 F -0.11 -1.84 15.80 2.25 0.04 -1.81 16 22 C -0.14 -2.51 5.90 -104.75 -0.62 -3.12 16 23 C 0.52 11.59 7.70 -12.78 -0.10 11.50 16 24 O -0.51 -12.91 14.93 5.07 0.08 -12.84 16 25 H 0.10 2.64 6.07 -51.93 -0.32 2.32 16 26 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.04 1.04 7.96 -51.93 -0.41 0.63 16 28 H 0.27 7.06 8.31 -40.82 -0.34 6.73 16 29 H 0.19 2.13 7.85 -52.49 -0.41 1.72 16 30 H 0.15 0.82 8.06 -52.49 -0.42 0.39 16 31 H 0.15 1.05 8.06 -52.48 -0.42 0.62 16 LS Contribution 283.55 15.07 4.27 4.27 Total: -1.00 -31.42 283.55 -5.22 -36.65 By element: Atomic # 1 Polarization: -0.39 SS G_CDS: -2.31 Total: -2.70 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: -3.10 Total: -1.91 kcal Atomic # 7 Polarization: -37.42 SS G_CDS: 0.78 Total: -36.64 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: 0.08 Total: -12.84 kcal Atomic # 9 Polarization: -3.15 SS G_CDS: 0.07 Total: -3.08 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -31.42 -5.22 -36.65 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899350171.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.620 kcal (2) G-P(sol) polarization free energy of solvation -31.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds