Wall clock time and date at job start Tue Mar 31 2020 02:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47313 * 2 1 4 4 C 1.50699 * 109.47203 * 120.00650 * 2 1 3 5 5 H 1.08002 * 120.00516 * 119.99366 * 4 2 1 6 6 C 1.37884 * 119.99783 * 299.99666 * 4 2 1 7 7 N 1.31514 * 119.99707 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99956 * 180.27458 * 6 4 2 9 9 H 1.48497 * 109.47172 * 179.72730 * 8 6 4 10 10 H 1.48506 * 109.47132 * 299.72429 * 8 6 4 11 11 H 1.48501 * 109.47173 * 59.72550 * 8 6 4 12 12 N 1.46506 * 109.46957 * 240.00311 * 2 1 3 13 13 N 1.39510 * 119.12054 * 299.72946 * 12 2 1 14 14 C 1.29986 * 122.67355 * 179.72484 * 13 12 2 15 15 C 1.46269 * 119.99773 * 0.55062 * 14 13 12 16 16 C 1.39772 * 121.81640 * 179.70989 * 15 14 13 17 17 F 1.35094 * 120.21561 * 0.03559 * 16 15 14 18 18 C 1.37964 * 119.57033 * 180.02562 * 16 15 14 19 19 C 1.38769 * 120.78059 * 0.02562 * 18 16 15 20 20 C 1.38055 * 120.70426 * 359.97438 * 19 18 16 21 21 F 1.35099 * 120.23544 * 180.02562 * 20 19 18 22 22 C 1.39621 * 119.53130 * 0.02562 * 20 19 18 23 23 C 1.34927 * 119.11978 * 120.00033 * 12 2 1 24 24 O 1.21825 * 120.61699 * 359.97438 * 23 12 2 25 25 H 1.08994 * 109.46844 * 299.99958 * 1 2 3 26 26 H 1.08998 * 109.46846 * 59.99273 * 1 2 3 27 27 H 1.08997 * 109.47361 * 179.97438 * 1 2 3 28 28 H 0.97005 * 119.99656 * 179.97438 * 7 6 4 29 29 H 1.07998 * 119.99685 * 180.25276 * 14 13 12 30 30 H 1.08000 * 119.60836 * 180.02562 * 18 16 15 31 31 H 1.07996 * 119.64915 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5887 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9428 0.8295 2.6034 8 14 2.3283 -1.1157 4.0078 9 1 1.8377 -0.4127 5.2203 10 1 1.8338 -2.5160 4.0136 11 1 3.8133 -1.1152 4.0020 12 7 2.0183 -0.6906 -1.1963 13 7 1.6748 -2.0279 -1.3960 14 6 2.0652 -2.7052 -2.4345 15 6 2.9095 -2.0705 -3.4463 16 6 3.3559 -2.7645 -4.5744 17 9 3.0108 -4.0577 -4.7577 18 6 4.1511 -2.1203 -5.4997 19 6 4.5129 -0.7923 -5.3230 20 6 4.0843 -0.0861 -4.2169 21 9 4.4418 1.2066 -4.0547 22 6 3.2787 -0.7172 -3.2671 23 6 2.7928 -0.0178 -2.0726 24 8 3.0839 1.1486 -1.8753 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 0.7082 1.1606 3.4845 29 1 1.7702 -3.7379 -2.5477 30 1 4.4960 -2.6559 -6.3718 31 1 5.1357 -0.3058 -6.0591 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000899350172.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:20:41 Heat of formation + Delta-G solvation = -71.026061 kcal Electronic energy + Delta-G solvation = -21519.206696 eV Core-core repulsion = 17823.017339 eV Total energy + Delta-G solvation = -3696.189357 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 280.076 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.11405 -50.05633 -41.89567 -39.39317 -38.15306 -36.21689 -33.93900 -32.18567 -31.63013 -30.55646 -27.41463 -26.18458 -25.42350 -23.28699 -22.91042 -20.08739 -19.87752 -18.92935 -18.40480 -18.04507 -17.45543 -17.30934 -17.01431 -16.51321 -16.31905 -16.24538 -16.03022 -15.49989 -14.84856 -14.67906 -14.10170 -14.01586 -13.72413 -13.67525 -13.30896 -13.13870 -13.01731 -12.81373 -12.66170 -12.52823 -12.27111 -11.96883 -11.37308 -10.77803 -10.64333 -10.58541 -10.18464 -9.31314 -8.23639 -6.39686 -0.82702 -0.57555 0.87665 1.23638 1.38963 1.41449 1.49611 1.52721 2.35544 2.46209 2.62362 2.81200 2.91451 3.06169 3.20267 3.47762 3.59741 4.04421 4.22419 4.51361 4.58895 4.68982 4.72301 4.78793 4.82136 4.85557 4.96012 5.12021 5.40461 5.49485 5.61423 5.80463 6.00031 6.56098 6.64781 7.06291 7.28729 8.82032 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.023070 B = 0.005526 C = 0.004948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.410364 B = 5066.006506 C = 5658.019766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.275 3.725 3 H 0.030 0.970 4 C -0.538 4.538 5 H 0.054 0.946 6 C 0.018 3.982 7 N -0.915 5.915 8 Si 0.972 3.028 9 H -0.275 1.275 10 H -0.264 1.264 11 H -0.277 1.277 12 N -0.410 5.410 13 N -0.230 5.230 14 C 0.096 3.904 15 C -0.078 4.078 16 C 0.125 3.875 17 F -0.112 7.112 18 C -0.070 4.070 19 C -0.100 4.100 20 C 0.128 3.872 21 F -0.131 7.131 22 C -0.168 4.168 23 C 0.500 3.500 24 O -0.567 6.567 25 H 0.080 0.920 26 H 0.017 0.983 27 H 0.049 0.951 28 H 0.269 0.731 29 H 0.240 0.760 30 H 0.209 0.791 31 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.713 -10.808 -19.021 22.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.175 3.825 3 H 0.048 0.952 4 C -0.576 4.576 5 H 0.072 0.928 6 C -0.182 4.182 7 N -0.553 5.553 8 Si 0.796 3.204 9 H -0.200 1.200 10 H -0.188 1.188 11 H -0.203 1.203 12 N -0.226 5.226 13 N -0.038 5.038 14 C -0.108 4.108 15 C -0.083 4.083 16 C 0.102 3.898 17 F -0.090 7.090 18 C -0.089 4.089 19 C -0.119 4.119 20 C 0.107 3.893 21 F -0.109 7.109 22 C -0.176 4.176 23 C 0.292 3.708 24 O -0.447 6.447 25 H 0.099 0.901 26 H 0.037 0.963 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.256 0.744 30 H 0.226 0.774 31 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 5.227 -9.966 -17.825 21.080 hybrid contribution 0.503 0.477 0.697 0.983 sum 5.730 -9.489 -17.128 20.402 Atomic orbital electron populations 1.21831 0.95824 1.00623 1.00250 1.18917 0.92801 0.91355 0.79429 0.95213 1.21301 1.32706 1.12894 0.90679 0.92781 1.25735 0.94876 0.95645 1.01910 1.69981 1.36771 1.23560 1.25002 0.85403 0.78354 0.78928 0.77709 1.20030 1.18835 1.20255 1.49780 1.43817 1.06673 1.22374 1.74537 1.17009 0.91996 1.20245 1.25747 0.95190 1.01726 0.88124 1.19687 0.99737 0.91773 0.97146 1.17289 0.98768 0.79639 0.94060 1.91579 1.90305 1.32378 1.94711 1.21652 0.94187 0.93502 0.99520 1.21535 1.00504 0.94281 0.95589 1.17873 0.96460 0.79435 0.95521 1.91564 1.89420 1.34446 1.95455 1.20080 1.05062 0.95444 0.96975 1.19043 0.80083 0.87058 0.84660 1.90855 1.59263 1.17299 1.77250 0.90131 0.96344 0.93206 0.92130 0.74402 0.77413 0.78475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.64 9.08 71.98 0.65 -5.99 16 2 C 0.27 15.56 2.68 44.24 0.12 15.68 16 3 H 0.03 1.95 6.85 -2.39 -0.02 1.93 16 4 C -0.54 -31.40 8.54 25.60 0.22 -31.18 16 5 H 0.05 3.16 7.81 -2.91 -0.02 3.14 16 6 C 0.02 1.05 5.30 84.66 0.45 1.50 16 7 N -0.91 -53.74 11.32 21.45 0.24 -53.49 16 8 Si 0.97 44.61 29.54 68.60 2.03 46.63 16 9 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 10 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 11 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 12 N -0.41 -20.29 3.28 -449.69 -1.47 -21.77 16 13 N -0.23 -9.46 10.67 -52.97 -0.57 -10.02 16 14 C 0.10 2.79 11.17 87.05 0.97 3.76 16 15 C -0.08 -2.11 5.89 -20.04 -0.12 -2.23 16 16 C 0.12 2.13 7.30 22.58 0.16 2.30 16 17 F -0.11 -1.63 16.77 44.97 0.75 -0.88 16 18 C -0.07 -0.75 9.99 22.33 0.22 -0.53 16 19 C -0.10 -1.49 9.99 22.35 0.22 -1.26 16 20 C 0.13 3.68 7.29 22.56 0.16 3.84 16 21 F -0.13 -4.58 15.80 44.97 0.71 -3.87 16 22 C -0.17 -5.94 5.90 -19.95 -0.12 -6.05 16 23 C 0.50 24.13 7.70 86.43 0.67 24.79 16 24 O -0.57 -31.69 14.93 -4.75 -0.07 -31.76 16 25 H 0.08 4.50 6.07 -2.39 -0.01 4.49 16 26 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.05 2.47 7.96 -2.39 -0.02 2.45 16 28 H 0.27 14.85 8.31 -92.70 -0.77 14.08 16 29 H 0.24 4.34 7.85 -2.91 -0.02 4.32 16 30 H 0.21 0.16 8.06 -2.91 -0.02 0.14 16 31 H 0.20 1.31 8.06 -2.91 -0.02 1.29 16 Total: -1.00 -78.48 283.55 6.43 -72.06 By element: Atomic # 1 Polarization: -2.70 SS G_CDS: 1.19 Total: -1.51 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: 3.62 Total: 4.62 kcal Atomic # 7 Polarization: -83.49 SS G_CDS: -1.80 Total: -85.28 kcal Atomic # 8 Polarization: -31.69 SS G_CDS: -0.07 Total: -31.76 kcal Atomic # 9 Polarization: -6.21 SS G_CDS: 1.46 Total: -4.75 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.63 kcal Total: -78.48 6.43 -72.06 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899350172.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.029 kcal (2) G-P(sol) polarization free energy of solvation -78.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds