Wall clock time and date at job start Tue Mar 31 2020 01:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21282 * 119.99477 * 2 1 4 4 N 1.34767 * 120.00254 * 180.02562 * 2 1 3 5 5 N 1.40100 * 120.00157 * 179.97438 * 4 2 1 6 6 C 1.34777 * 120.00412 * 180.27441 * 5 4 2 7 7 O 1.21612 * 119.99706 * 359.72309 * 6 5 4 8 8 C 1.47428 * 120.00636 * 179.72706 * 6 5 4 9 9 C 1.39683 * 120.21008 * 359.97438 * 8 6 5 10 10 C 1.37808 * 119.93489 * 179.97438 * 9 8 6 11 11 C 1.38653 * 120.38277 * 0.02562 * 10 9 8 12 12 C 1.37906 * 120.44077 * 359.97438 * 11 10 9 13 13 C 1.39121 * 120.04829 * 359.74804 * 12 11 10 14 14 S 1.76198 * 120.18973 * 180.25088 * 13 12 11 15 15 C 1.76201 * 100.00230 * 6.85424 * 14 13 12 16 16 H 1.08001 * 119.99907 * 5.65852 * 15 14 13 17 17 C 1.38797 * 120.00292 * 185.65398 * 15 14 13 18 18 N 1.31555 * 119.99797 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00155 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47158 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46746 * 120.00526 * 19 17 15 22 22 H 1.48500 * 109.47257 * 240.00064 * 19 17 15 23 23 H 1.09001 * 109.47107 * 239.99633 * 1 2 3 24 24 H 1.08997 * 109.46942 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.46918 * 119.99664 * 1 2 3 26 26 H 0.97006 * 120.00235 * 0.02562 * 4 2 1 27 27 H 0.97005 * 120.00187 * 0.02562 * 5 4 2 28 28 H 1.08003 * 120.03035 * 359.95720 * 9 8 6 29 29 H 1.07998 * 119.80613 * 179.97438 * 10 9 8 30 30 H 1.08004 * 119.77899 * 179.97438 * 11 10 9 31 31 H 1.08004 * 119.97893 * 180.02562 * 12 11 10 32 32 H 0.97002 * 120.00018 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 7 3.5819 -1.1671 -0.0011 6 6 4.2559 -2.3342 -0.0072 7 8 3.6479 -3.3874 -0.0071 8 6 5.7302 -2.3342 -0.0138 9 6 6.4330 -1.1271 -0.0144 10 6 7.8111 -1.1337 -0.0201 11 6 8.5066 -2.3332 -0.0258 12 6 7.8285 -3.5340 -0.0254 13 6 6.4374 -3.5485 -0.0138 14 16 5.5673 -5.0807 -0.0066 15 6 6.9160 -6.1976 0.1894 16 1 7.9128 -5.8166 0.3554 17 6 6.6972 -7.5669 0.1304 18 7 5.4830 -8.0309 -0.0722 19 14 8.1272 -8.7510 0.3375 20 1 9.3795 -7.9821 0.5512 21 1 7.8784 -9.6272 1.5104 22 1 8.2601 -9.5850 -0.8840 23 1 -0.3633 -0.5139 0.8900 24 1 -0.3633 1.0276 0.0005 25 1 -0.3633 -0.5138 -0.8900 26 1 1.6960 -2.0072 -0.0013 27 1 4.0670 -0.3270 -0.0007 28 1 5.8970 -0.1895 -0.0106 29 1 8.3524 -0.1992 -0.0209 30 1 9.5866 -2.3270 -0.0307 31 1 8.3778 -4.4640 -0.0295 32 1 5.3302 -8.9879 -0.1138 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000912694076.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:28:55 Heat of formation + Delta-G solvation = -11.220363 kcal Electronic energy + Delta-G solvation = -18644.392021 eV Core-core repulsion = 15504.636420 eV Total energy + Delta-G solvation = -3139.755601 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.22786 -39.00135 -37.51156 -35.12325 -32.82344 -32.23732 -30.59660 -30.36215 -28.63533 -25.89655 -23.49439 -22.08092 -21.38702 -20.55411 -18.34774 -17.67250 -17.38941 -16.49733 -15.64216 -15.63435 -15.17962 -14.76125 -14.42733 -14.16490 -14.00767 -13.83702 -13.11218 -12.95273 -12.83923 -12.60502 -12.14377 -11.67223 -11.29745 -11.25990 -11.10274 -10.98774 -10.39904 -10.28883 -9.96788 -9.79835 -9.58716 -8.81083 -8.50895 -8.21218 -8.16897 -6.61963 -6.53291 -4.24219 1.38810 1.94878 1.99196 2.40437 3.05671 3.08043 3.16812 3.34611 3.35509 3.98503 4.17159 4.38310 4.65034 4.88551 5.01253 5.04052 5.13216 5.22389 5.32966 5.54648 5.59761 5.84259 6.03692 6.29101 6.49479 6.70986 6.81276 6.83095 7.00707 7.06992 7.38254 7.51535 7.71499 7.98753 8.10065 8.63557 8.93555 10.50168 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.022273 B = 0.004770 C = 0.003941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.808525 B = 5869.123619 C = 7102.878894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.507 3.493 3 O -0.555 6.555 4 N -0.517 5.517 5 N -0.535 5.535 6 C 0.555 3.445 7 O -0.510 6.510 8 C -0.173 4.173 9 C -0.059 4.059 10 C -0.183 4.183 11 C -0.073 4.073 12 C -0.152 4.152 13 C -0.054 4.054 14 S 0.188 5.812 15 C -0.596 4.596 16 H 0.093 0.907 17 C 0.084 3.916 18 N -0.857 5.857 19 Si 0.921 3.079 20 H -0.267 1.267 21 H -0.276 1.276 22 H -0.276 1.276 23 H 0.093 0.907 24 H 0.098 0.902 25 H 0.093 0.907 26 H 0.432 0.568 27 H 0.426 0.574 28 H 0.112 0.888 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.141 0.859 32 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.186 11.950 -0.024 12.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.294 3.706 3 O -0.433 6.433 4 N -0.264 5.264 5 N -0.286 5.286 6 C 0.346 3.654 7 O -0.386 6.386 8 C -0.190 4.190 9 C -0.080 4.080 10 C -0.208 4.208 11 C -0.095 4.095 12 C -0.177 4.177 13 C -0.174 4.174 14 S 0.453 5.547 15 C -0.742 4.742 16 H 0.110 0.890 17 C -0.127 4.127 18 N -0.490 5.490 19 Si 0.746 3.254 20 H -0.191 1.191 21 H -0.202 1.202 22 H -0.202 1.202 23 H 0.111 0.889 24 H 0.117 0.883 25 H 0.111 0.889 26 H 0.275 0.725 27 H 0.269 0.731 28 H 0.130 0.870 29 H 0.132 0.868 30 H 0.132 0.868 31 H 0.158 0.842 32 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.669 11.079 -0.136 12.446 hybrid contribution 2.255 -0.403 0.204 2.300 sum -3.414 10.675 0.068 11.208 Atomic orbital electron populations 1.21834 0.89646 1.05970 1.04942 1.21065 0.90697 0.82323 0.76491 1.90730 1.70525 1.31044 1.50966 1.44941 0.95736 1.10607 1.75144 1.44958 0.94033 1.10680 1.78978 1.18498 0.87718 0.82100 0.77132 1.90800 1.68803 1.29670 1.49356 1.18721 0.89649 0.93386 1.17259 1.20944 0.94676 0.95438 0.96902 1.20657 0.93686 0.97574 1.08875 1.21126 0.99132 0.92519 0.96717 1.21444 0.93201 0.98945 1.04060 1.23042 0.97255 1.00260 0.96839 1.84683 1.07320 0.87859 1.74886 1.24094 0.98450 0.94379 1.57285 0.88950 1.25109 0.96887 0.97745 0.93005 1.69977 1.20353 1.15067 1.43576 0.86077 0.81131 0.79932 0.78282 1.19086 1.20185 1.20181 0.88854 0.88297 0.88852 0.72540 0.73071 0.86988 0.86774 0.86780 0.84152 0.91498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.10 10.32 36.01 0.37 -0.73 16 2 C 0.51 6.04 8.06 -10.99 -0.09 5.95 16 3 O -0.56 -8.66 16.92 5.56 0.09 -8.56 16 4 N -0.52 -6.77 6.26 31.22 0.20 -6.58 16 5 N -0.53 -8.26 6.21 30.43 0.19 -8.07 16 6 C 0.56 10.52 7.87 -12.52 -0.10 10.42 16 7 O -0.51 -11.18 13.61 5.27 0.07 -11.11 16 8 C -0.17 -3.35 5.89 -104.75 -0.62 -3.97 16 9 C -0.06 -0.94 9.53 -39.20 -0.37 -1.32 16 10 C -0.18 -2.78 10.02 -39.59 -0.40 -3.18 16 11 C -0.07 -1.20 10.02 -39.55 -0.40 -1.60 16 12 C -0.15 -3.06 9.22 -39.38 -0.36 -3.43 16 13 C -0.05 -1.19 6.14 -38.39 -0.24 -1.42 16 14 S 0.19 4.86 18.56 -107.50 -2.00 2.86 16 15 C -0.60 -15.97 9.00 30.94 0.28 -15.69 16 16 H 0.09 2.35 4.98 -52.49 -0.26 2.09 16 17 C 0.08 2.24 5.49 -17.46 -0.10 2.14 16 18 N -0.86 -24.07 13.22 55.49 0.73 -23.34 16 19 Si 0.92 20.19 29.55 -169.99 -5.02 15.17 16 20 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 21 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 22 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 23 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.10 0.62 8.12 -51.93 -0.42 0.20 16 25 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.43 5.16 8.00 -182.59 -1.46 3.70 16 27 H 0.43 6.04 6.03 -182.59 -1.10 4.94 16 28 H 0.11 1.42 6.40 -52.48 -0.34 1.09 16 29 H 0.11 1.38 8.06 -52.49 -0.42 0.95 16 30 H 0.11 1.55 8.06 -52.48 -0.42 1.12 16 31 H 0.14 2.95 5.04 -52.48 -0.26 2.69 16 32 H 0.28 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 296.50 15.07 4.47 4.47 Total: -1.00 -32.80 296.50 -7.95 -40.75 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -4.67 Total: 7.23 kcal Atomic # 6 Polarization: -10.80 SS G_CDS: -2.02 Total: -12.81 kcal Atomic # 7 Polarization: -39.10 SS G_CDS: 1.12 Total: -37.99 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: 0.17 Total: -19.68 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -5.02 Total: 15.17 kcal Atomic # 16 Polarization: 4.86 SS G_CDS: -2.00 Total: 2.86 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -32.80 -7.95 -40.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912694076.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.530 kcal (2) G-P(sol) polarization free energy of solvation -32.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds