Wall clock time and date at job start Tue Mar 31 2020 01:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21282 * 119.99477 * 2 1 4 4 N 1.34767 * 120.00254 * 180.02562 * 2 1 3 5 5 N 1.40100 * 120.00157 * 179.97438 * 4 2 1 6 6 C 1.34777 * 120.00412 * 180.27441 * 5 4 2 7 7 O 1.21612 * 119.99706 * 359.72309 * 6 5 4 8 8 C 1.47428 * 120.00636 * 179.72706 * 6 5 4 9 9 C 1.39683 * 120.21008 * 359.97438 * 8 6 5 10 10 C 1.37808 * 119.93489 * 179.97438 * 9 8 6 11 11 C 1.38653 * 120.38277 * 0.02562 * 10 9 8 12 12 C 1.37906 * 120.44077 * 359.97438 * 11 10 9 13 13 C 1.39121 * 120.04829 * 359.74804 * 12 11 10 14 14 S 1.76198 * 120.18973 * 180.25088 * 13 12 11 15 15 C 1.76201 * 100.00230 * 6.85424 * 14 13 12 16 16 H 1.08001 * 119.99907 * 5.65852 * 15 14 13 17 17 C 1.38797 * 120.00292 * 185.65398 * 15 14 13 18 18 N 1.31555 * 119.99797 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00155 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.47158 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46746 * 120.00526 * 19 17 15 22 22 H 1.48500 * 109.47257 * 240.00064 * 19 17 15 23 23 H 1.09001 * 109.47107 * 239.99633 * 1 2 3 24 24 H 1.08997 * 109.46942 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.46918 * 119.99664 * 1 2 3 26 26 H 0.97006 * 120.00235 * 0.02562 * 4 2 1 27 27 H 0.97005 * 120.00187 * 0.02562 * 5 4 2 28 28 H 1.08003 * 120.03035 * 359.95720 * 9 8 6 29 29 H 1.07998 * 119.80613 * 179.97438 * 10 9 8 30 30 H 1.08004 * 119.77899 * 179.97438 * 11 10 9 31 31 H 1.08004 * 119.97893 * 180.02562 * 12 11 10 32 32 H 0.97002 * 120.00018 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1671 -0.0005 5 7 3.5819 -1.1671 -0.0011 6 6 4.2559 -2.3342 -0.0072 7 8 3.6479 -3.3874 -0.0071 8 6 5.7302 -2.3342 -0.0138 9 6 6.4330 -1.1271 -0.0144 10 6 7.8111 -1.1337 -0.0201 11 6 8.5066 -2.3332 -0.0258 12 6 7.8285 -3.5340 -0.0254 13 6 6.4374 -3.5485 -0.0138 14 16 5.5673 -5.0807 -0.0066 15 6 6.9160 -6.1976 0.1894 16 1 7.9128 -5.8166 0.3554 17 6 6.6972 -7.5669 0.1304 18 7 5.4830 -8.0309 -0.0722 19 14 8.1272 -8.7510 0.3375 20 1 9.3795 -7.9821 0.5512 21 1 7.8784 -9.6272 1.5104 22 1 8.2601 -9.5850 -0.8840 23 1 -0.3633 -0.5139 0.8900 24 1 -0.3633 1.0276 0.0005 25 1 -0.3633 -0.5138 -0.8900 26 1 1.6960 -2.0072 -0.0013 27 1 4.0670 -0.3270 -0.0007 28 1 5.8970 -0.1895 -0.0106 29 1 8.3524 -0.1992 -0.0209 30 1 9.5866 -2.3270 -0.0307 31 1 8.3778 -4.4640 -0.0295 32 1 5.3302 -8.9879 -0.1138 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000912694076.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:28:55 Heat of formation + Delta-G solvation = -35.263909 kcal Electronic energy + Delta-G solvation = -18645.434627 eV Core-core repulsion = 15504.636420 eV Total energy + Delta-G solvation = -3140.798207 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 280.067 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.51060 -40.27368 -38.96312 -36.41030 -34.76942 -33.48914 -31.85387 -31.78082 -29.59263 -27.84640 -24.92023 -23.51058 -22.55305 -21.92428 -19.95247 -19.02432 -18.80211 -17.76974 -17.20263 -16.84109 -16.72618 -16.21185 -15.76049 -15.62018 -15.37043 -15.11820 -14.74462 -14.49517 -13.71117 -13.39864 -13.34380 -13.16546 -13.00428 -12.90459 -12.57998 -12.38493 -12.05551 -11.67631 -11.46596 -11.38610 -11.22467 -10.44680 -10.02023 -9.94288 -9.43013 -8.48076 -8.46208 -6.24971 -0.07167 0.49719 0.83753 1.27771 1.36500 1.40947 1.46497 1.62750 1.92266 2.20379 2.85741 2.98883 3.04238 3.23776 3.64240 3.94961 3.98082 4.24444 4.53065 4.55528 4.59205 4.66948 4.79629 5.03773 5.08837 5.30291 5.43486 5.50001 5.59405 5.64958 5.79795 6.07207 6.14958 6.50518 6.86028 6.95985 7.32844 8.59591 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.022273 B = 0.004770 C = 0.003941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.808525 B = 5869.123619 C = 7102.878894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.508 3.492 3 O -0.592 6.592 4 N -0.520 5.520 5 N -0.524 5.524 6 C 0.553 3.447 7 O -0.545 6.545 8 C -0.176 4.176 9 C -0.056 4.056 10 C -0.156 4.156 11 C -0.063 4.063 12 C -0.172 4.172 13 C -0.068 4.068 14 S 0.076 5.924 15 C -0.603 4.603 16 H 0.096 0.904 17 C 0.027 3.973 18 N -0.903 5.903 19 Si 0.993 3.007 20 H -0.257 1.257 21 H -0.271 1.271 22 H -0.270 1.270 23 H 0.115 0.885 24 H 0.107 0.893 25 H 0.115 0.885 26 H 0.437 0.563 27 H 0.434 0.566 28 H 0.152 0.848 29 H 0.166 0.834 30 H 0.153 0.847 31 H 0.124 0.876 32 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.913 15.143 0.102 15.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.298 3.702 3 O -0.471 6.471 4 N -0.268 5.268 5 N -0.274 5.274 6 C 0.342 3.658 7 O -0.423 6.423 8 C -0.192 4.192 9 C -0.076 4.076 10 C -0.179 4.179 11 C -0.084 4.084 12 C -0.197 4.197 13 C -0.186 4.186 14 S 0.335 5.665 15 C -0.750 4.750 16 H 0.114 0.886 17 C -0.179 4.179 18 N -0.538 5.538 19 Si 0.814 3.186 20 H -0.180 1.180 21 H -0.197 1.197 22 H -0.195 1.195 23 H 0.134 0.866 24 H 0.126 0.874 25 H 0.134 0.866 26 H 0.280 0.720 27 H 0.278 0.722 28 H 0.169 0.831 29 H 0.183 0.817 30 H 0.171 0.829 31 H 0.141 0.859 32 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.379 14.398 -0.011 15.049 hybrid contribution 1.874 -0.910 0.158 2.089 sum -2.505 13.488 0.148 13.719 Atomic orbital electron populations 1.21932 0.85187 1.07258 1.07063 1.22118 0.92459 0.81063 0.74590 1.90712 1.71672 1.32165 1.52571 1.45305 0.94340 1.11623 1.75552 1.44709 0.95676 1.09799 1.77196 1.18536 0.87933 0.82439 0.76870 1.90802 1.69401 1.31192 1.50930 1.19070 0.90318 0.93803 1.15961 1.21411 0.95511 0.95357 0.95347 1.21311 0.93394 0.98974 1.04182 1.21576 1.01175 0.91353 0.94327 1.21475 0.92527 1.00168 1.05505 1.22954 0.98041 0.98858 0.98758 1.84802 1.09746 0.91531 1.80412 1.24290 0.98361 0.94912 1.57389 0.88609 1.26114 0.99600 0.99456 0.92766 1.70118 1.22584 1.15291 1.45834 0.85000 0.77803 0.77459 0.78352 1.18035 1.19663 1.19543 0.86634 0.87399 0.86629 0.71996 0.72163 0.83098 0.81698 0.82931 0.85878 0.91454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 10.32 71.24 0.74 -0.90 16 2 C 0.51 11.14 8.06 87.66 0.71 11.84 16 3 O -0.59 -17.37 16.92 -3.04 -0.05 -17.42 16 4 N -0.52 -13.06 6.26 -173.54 -1.09 -14.14 16 5 N -0.52 -15.57 6.21 -175.88 -1.09 -16.66 16 6 C 0.55 21.10 7.87 86.66 0.68 21.78 16 7 O -0.54 -25.09 13.61 -4.07 -0.06 -25.15 16 8 C -0.18 -6.71 5.89 -19.95 -0.12 -6.83 16 9 C -0.06 -1.57 9.53 22.52 0.21 -1.35 16 10 C -0.16 -3.84 10.02 22.27 0.22 -3.62 16 11 C -0.06 -1.85 10.02 22.29 0.22 -1.62 16 12 C -0.17 -6.89 9.22 22.40 0.21 -6.68 16 13 C -0.07 -3.08 6.14 23.04 0.14 -2.93 16 14 S 0.08 4.21 18.56 -56.49 -1.05 3.16 16 15 C -0.60 -34.23 9.00 67.95 0.61 -33.61 16 16 H 0.10 5.12 4.98 -2.91 -0.01 5.11 16 17 C 0.03 1.48 5.49 84.87 0.47 1.95 16 18 N -0.90 -53.86 13.22 21.64 0.29 -53.57 16 19 Si 0.99 42.86 29.55 68.60 2.03 44.89 16 20 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 21 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 22 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 23 H 0.12 0.78 8.14 -2.39 -0.02 0.77 16 24 H 0.11 1.03 8.12 -2.39 -0.02 1.01 16 25 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.44 10.24 8.00 -213.31 -1.71 8.53 16 27 H 0.43 11.29 6.03 -213.31 -1.29 10.00 16 28 H 0.15 3.05 6.40 -2.91 -0.02 3.03 16 29 H 0.17 2.61 8.06 -2.91 -0.02 2.58 16 30 H 0.15 3.32 8.06 -2.91 -0.02 3.30 16 31 H 0.12 5.33 5.04 -2.91 -0.01 5.31 16 32 H 0.28 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -78.31 296.50 1.28 -77.04 By element: Atomic # 1 Polarization: 25.63 SS G_CDS: -1.80 Total: 23.84 kcal Atomic # 6 Polarization: -26.07 SS G_CDS: 4.09 Total: -21.98 kcal Atomic # 7 Polarization: -82.49 SS G_CDS: -1.89 Total: -84.38 kcal Atomic # 8 Polarization: -42.46 SS G_CDS: -0.11 Total: -42.57 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Atomic # 16 Polarization: 4.21 SS G_CDS: -1.05 Total: 3.16 kcal Total: -78.31 1.28 -77.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000912694076.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.773 kcal (2) G-P(sol) polarization free energy of solvation -78.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds