Wall clock time and date at job start Tue Mar 31 2020 01:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46507 * 109.46901 * 2 1 4 4 C 1.46496 * 119.99980 * 274.99783 * 3 2 1 5 5 C 1.50697 * 109.47521 * 276.45349 * 4 3 2 6 6 H 1.07997 * 120.00054 * 4.76577 * 5 4 3 7 7 C 1.37877 * 120.00298 * 184.77305 * 5 4 3 8 8 N 1.31511 * 120.00316 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 119.99820 * 359.97438 * 7 5 4 10 10 H 1.48494 * 109.47057 * 90.00435 * 9 7 5 11 11 H 1.48502 * 109.47296 * 210.00644 * 9 7 5 12 12 H 1.48497 * 109.47128 * 330.00287 * 9 7 5 13 13 S 1.65599 * 119.99836 * 95.00290 * 3 2 1 14 14 O 1.42095 * 106.40297 * 342.14595 * 13 3 2 15 15 O 1.42105 * 106.39846 * 209.22656 * 13 3 2 16 16 N 1.65601 * 107.21851 * 95.68899 * 13 3 2 17 17 C 1.46497 * 119.99980 * 294.67100 * 16 13 3 18 18 C 1.53047 * 113.15067 * 144.65275 * 17 16 13 19 19 S 1.81425 * 89.93272 * 148.12844 * 18 17 16 20 20 C 1.53036 * 113.15367 * 245.02558 * 17 16 13 21 21 H 1.08997 * 109.47565 * 299.99829 * 1 2 3 22 22 H 1.09000 * 109.47658 * 60.00022 * 1 2 3 23 23 H 1.09005 * 109.47118 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47265 * 240.00558 * 2 1 3 25 25 H 1.09000 * 109.47658 * 119.99978 * 2 1 3 26 26 H 1.09002 * 109.47255 * 36.45423 * 4 3 2 27 27 H 1.08997 * 109.47032 * 156.44815 * 4 3 2 28 28 H 0.97001 * 120.00035 * 179.97438 * 8 7 5 29 29 H 0.97000 * 120.00064 * 114.67468 * 16 13 3 30 30 H 1.09003 * 112.52862 * 14.84408 * 17 16 13 31 31 H 1.08993 * 113.15226 * 263.41174 * 18 17 16 32 32 H 1.09005 * 113.14399 * 32.85131 * 18 17 16 33 33 H 1.08997 * 113.15073 * 327.11958 * 20 17 16 34 34 H 1.09004 * 113.14438 * 96.55411 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1581 2.1087 -1.2639 5 6 3.4794 1.7614 -1.8999 6 1 4.1138 1.0111 -1.4516 7 6 3.8786 2.4016 -3.0539 8 7 5.0315 2.0982 -3.6092 9 14 2.7811 3.6992 -3.8295 10 1 3.1186 5.0322 -3.2690 11 1 2.9926 3.7122 -5.2993 12 1 1.3597 3.3845 -3.5368 13 16 2.4121 2.1202 1.4287 14 8 1.7938 1.3598 2.4576 15 8 2.1768 3.5090 1.2403 16 7 4.0458 1.9467 1.6363 17 6 4.6219 0.6140 1.8317 18 6 5.9995 0.4531 1.1848 19 16 6.4788 -0.7035 2.4978 20 6 5.2531 0.4280 3.2134 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5137 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.3468 1.8290 -1.9359 27 1 2.1178 3.1810 -1.0723 28 1 5.3121 2.5484 -4.4213 29 1 4.6214 2.7274 1.6284 30 1 3.9281 -0.1839 1.5666 31 1 5.9586 -0.0106 0.1992 32 1 6.5849 1.3726 1.1890 33 1 5.6947 1.3424 3.6094 34 1 4.5866 -0.0562 3.9273 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000921867676.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:27:13 Heat of formation + Delta-G solvation = -55.345820 kcal Electronic energy + Delta-G solvation = -19175.130534 eV Core-core repulsion = 16168.905462 eV Total energy + Delta-G solvation = -3006.225073 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 280.070 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -37.52109 -36.73260 -36.24583 -35.40617 -32.71421 -31.38299 -30.29454 -27.22593 -26.19644 -23.03018 -21.80642 -21.64358 -19.22916 -17.46144 -17.01774 -16.85214 -16.65337 -15.84156 -15.27666 -14.67836 -14.24470 -14.08317 -13.59337 -13.33503 -12.88046 -12.80546 -12.60291 -12.13760 -12.06338 -11.98549 -11.90800 -11.68102 -11.55653 -11.19323 -11.07571 -11.01866 -10.58068 -10.48087 -10.25030 -10.23757 -9.66755 -9.44081 -8.71000 -8.22014 -7.79656 -6.22719 -4.23231 1.08313 1.80785 1.95219 3.21333 3.27845 3.32407 3.34684 3.95618 4.29642 4.43193 4.70104 4.78259 4.89436 5.10998 5.22261 5.34268 5.42229 5.54042 5.63453 5.68363 5.86086 5.95163 6.08557 6.21853 6.44937 6.52572 6.78402 6.99331 7.13209 7.35429 7.48558 8.33937 8.80307 9.38488 10.89290 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.015817 B = 0.007948 C = 0.006335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.826080 B = 3522.065648 C = 4419.108123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.125 3.875 3 N -0.986 5.986 4 C 0.216 3.784 5 C -0.541 4.541 6 H 0.082 0.918 7 C 0.077 3.923 8 N -0.892 5.892 9 Si 0.868 3.132 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.264 1.264 13 S 2.785 3.215 14 O -0.992 6.992 15 O -0.981 6.981 16 N -1.105 6.105 17 C 0.167 3.833 18 C -0.083 4.083 19 S -0.294 6.294 20 C -0.099 4.099 21 H 0.054 0.946 22 H 0.059 0.941 23 H 0.061 0.939 24 H 0.085 0.915 25 H 0.068 0.932 26 H 0.036 0.964 27 H 0.041 0.959 28 H 0.265 0.735 29 H 0.417 0.583 30 H 0.127 0.873 31 H 0.112 0.888 32 H 0.111 0.889 33 H 0.108 0.892 34 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.114 -3.290 9.411 10.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.001 4.001 3 N -0.827 5.827 4 C 0.092 3.908 5 C -0.580 4.580 6 H 0.100 0.900 7 C -0.127 4.127 8 N -0.530 5.530 9 Si 0.695 3.305 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.188 1.188 13 S 2.793 3.207 14 O -0.975 6.975 15 O -0.966 6.966 16 N -0.862 5.862 17 C 0.056 3.944 18 C -0.233 4.233 19 S -0.069 6.069 20 C -0.250 4.250 21 H 0.073 0.927 22 H 0.078 0.922 23 H 0.080 0.920 24 H 0.103 0.897 25 H 0.086 0.914 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.075 0.925 29 H 0.251 0.749 30 H 0.144 0.856 31 H 0.130 0.870 32 H 0.129 0.871 33 H 0.126 0.874 34 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -1.878 -4.089 10.136 11.090 hybrid contribution -0.386 1.734 -1.165 2.124 sum -2.264 -2.354 8.971 9.547 Atomic orbital electron populations 1.22200 0.96777 1.01695 1.02242 1.21100 0.93806 0.82517 1.02716 1.57511 1.78686 1.23110 1.23370 1.19562 0.98300 0.91948 0.80957 1.21420 1.02782 1.23911 1.09839 0.90026 1.24849 0.94790 0.96473 0.96589 1.69877 1.20369 1.42318 1.20407 0.86972 0.81865 0.82846 0.78866 1.19769 1.21048 1.18841 1.01806 0.72816 0.73098 0.73007 1.93566 1.74841 1.73056 1.56067 1.93588 1.84134 1.32361 1.86479 1.56039 1.28735 1.12900 1.88490 1.22049 0.94903 0.85723 0.91750 1.24860 0.96896 0.99755 1.01758 1.88929 1.60389 1.41176 1.16441 1.25063 0.97634 1.00117 1.02200 0.92713 0.92182 0.92005 0.89703 0.91381 0.94577 0.94097 0.92467 0.74865 0.85562 0.86989 0.87107 0.87391 0.87981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.39 10.23 37.15 0.38 -2.01 16 2 C 0.12 1.94 6.06 -4.04 -0.02 1.92 16 3 N -0.99 -18.12 2.83 -115.67 -0.33 -18.45 16 4 C 0.22 4.70 4.52 -5.20 -0.02 4.67 16 5 C -0.54 -13.36 9.93 -34.44 -0.34 -13.70 16 6 H 0.08 2.10 8.06 -52.49 -0.42 1.68 16 7 C 0.08 2.01 5.47 -17.82 -0.10 1.92 16 8 N -0.89 -24.97 13.96 55.43 0.77 -24.19 16 9 Si 0.87 20.12 27.38 -169.99 -4.65 15.46 16 10 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.26 -5.86 6.68 56.52 0.38 -5.48 16 13 S 2.79 49.37 6.05 -107.50 -0.65 48.72 16 14 O -0.99 -18.05 16.67 -57.17 -0.95 -19.00 16 15 O -0.98 -20.48 16.81 -57.17 -0.96 -21.45 16 16 N -1.10 -16.22 5.80 -13.75 -0.08 -16.30 16 17 C 0.17 2.23 4.03 -67.89 -0.27 1.96 16 18 C -0.08 -1.12 7.73 37.18 0.29 -0.84 16 19 S -0.29 -3.95 24.80 -107.50 -2.67 -6.61 16 20 C -0.10 -1.17 7.76 37.18 0.29 -0.88 16 21 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 22 H 0.06 0.86 8.13 -51.93 -0.42 0.44 16 23 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.08 1.33 8.11 -51.93 -0.42 0.91 16 25 H 0.07 0.94 6.59 -51.93 -0.34 0.60 16 26 H 0.04 0.78 7.50 -51.93 -0.39 0.39 16 27 H 0.04 0.94 6.14 -51.93 -0.32 0.62 16 28 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.42 5.51 8.93 -34.47 -0.31 5.21 16 30 H 0.13 1.66 7.15 -51.93 -0.37 1.29 16 31 H 0.11 1.68 8.14 -51.93 -0.42 1.26 16 32 H 0.11 1.41 8.14 -51.93 -0.42 0.99 16 33 H 0.11 1.12 8.14 -51.93 -0.42 0.69 16 34 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 LS Contribution 308.69 15.07 4.65 4.65 Total: -1.00 -30.21 308.69 -9.36 -39.57 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -4.69 Total: 4.56 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: 0.20 Total: -6.96 kcal Atomic # 7 Polarization: -59.31 SS G_CDS: 0.37 Total: -58.94 kcal Atomic # 8 Polarization: -38.53 SS G_CDS: -1.91 Total: -40.45 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -4.65 Total: 15.46 kcal Atomic # 16 Polarization: 45.42 SS G_CDS: -3.32 Total: 42.11 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.21 -9.36 -39.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921867676.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.773 kcal (2) G-P(sol) polarization free energy of solvation -30.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds