Wall clock time and date at job start Tue Mar 31 2020 01:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46507 * 109.46901 * 2 1 4 4 C 1.46496 * 119.99980 * 274.99783 * 3 2 1 5 5 C 1.50697 * 109.47521 * 276.45349 * 4 3 2 6 6 H 1.07997 * 120.00054 * 4.76577 * 5 4 3 7 7 C 1.37877 * 120.00298 * 184.77305 * 5 4 3 8 8 N 1.31511 * 120.00316 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 119.99820 * 359.97438 * 7 5 4 10 10 H 1.48494 * 109.47057 * 90.00435 * 9 7 5 11 11 H 1.48502 * 109.47296 * 210.00644 * 9 7 5 12 12 H 1.48497 * 109.47128 * 330.00287 * 9 7 5 13 13 S 1.65599 * 119.99836 * 95.00290 * 3 2 1 14 14 O 1.42095 * 106.40297 * 342.14595 * 13 3 2 15 15 O 1.42105 * 106.39846 * 209.22656 * 13 3 2 16 16 N 1.65601 * 107.21851 * 95.68899 * 13 3 2 17 17 C 1.46497 * 119.99980 * 294.67100 * 16 13 3 18 18 C 1.53047 * 113.15067 * 144.65275 * 17 16 13 19 19 S 1.81425 * 89.93272 * 148.12844 * 18 17 16 20 20 C 1.53036 * 113.15367 * 245.02558 * 17 16 13 21 21 H 1.08997 * 109.47565 * 299.99829 * 1 2 3 22 22 H 1.09000 * 109.47658 * 60.00022 * 1 2 3 23 23 H 1.09005 * 109.47118 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.47265 * 240.00558 * 2 1 3 25 25 H 1.09000 * 109.47658 * 119.99978 * 2 1 3 26 26 H 1.09002 * 109.47255 * 36.45423 * 4 3 2 27 27 H 1.08997 * 109.47032 * 156.44815 * 4 3 2 28 28 H 0.97001 * 120.00035 * 179.97438 * 8 7 5 29 29 H 0.97000 * 120.00064 * 114.67468 * 16 13 3 30 30 H 1.09003 * 112.52862 * 14.84408 * 17 16 13 31 31 H 1.08993 * 113.15226 * 263.41174 * 18 17 16 32 32 H 1.09005 * 113.14399 * 32.85131 * 18 17 16 33 33 H 1.08997 * 113.15073 * 327.11958 * 20 17 16 34 34 H 1.09004 * 113.14438 * 96.55411 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1581 2.1087 -1.2639 5 6 3.4794 1.7614 -1.8999 6 1 4.1138 1.0111 -1.4516 7 6 3.8786 2.4016 -3.0539 8 7 5.0315 2.0982 -3.6092 9 14 2.7811 3.6992 -3.8295 10 1 3.1186 5.0322 -3.2690 11 1 2.9926 3.7122 -5.2993 12 1 1.3597 3.3845 -3.5368 13 16 2.4121 2.1202 1.4287 14 8 1.7938 1.3598 2.4576 15 8 2.1768 3.5090 1.2403 16 7 4.0458 1.9467 1.6363 17 6 4.6219 0.6140 1.8317 18 6 5.9995 0.4531 1.1848 19 16 6.4788 -0.7035 2.4978 20 6 5.2531 0.4280 3.2134 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5137 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.3468 1.8290 -1.9359 27 1 2.1178 3.1810 -1.0723 28 1 5.3121 2.5484 -4.4213 29 1 4.6214 2.7274 1.6284 30 1 3.9281 -0.1839 1.5666 31 1 5.9586 -0.0106 0.1992 32 1 6.5849 1.3726 1.1890 33 1 5.6947 1.3424 3.6094 34 1 4.5866 -0.0562 3.9273 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000921867676.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:27:13 Heat of formation + Delta-G solvation = -77.404454 kcal Electronic energy + Delta-G solvation = -19176.087069 eV Core-core repulsion = 16168.905462 eV Total energy + Delta-G solvation = -3007.181607 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 280.070 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -38.71151 -38.15086 -37.72190 -36.90125 -34.62066 -32.58031 -31.76162 -28.89960 -27.23077 -24.58800 -23.16183 -22.92627 -20.58841 -19.03962 -18.67567 -18.38168 -17.83814 -17.16300 -16.55933 -16.17732 -15.72086 -15.53099 -14.83164 -14.56283 -14.48575 -14.10039 -13.88483 -13.70704 -13.50026 -13.31176 -13.18532 -13.17049 -13.04111 -12.75586 -12.59327 -12.21223 -12.13857 -12.05410 -11.67441 -11.57930 -11.36001 -10.74203 -10.62366 -9.76269 -8.87184 -8.24428 -6.26800 -0.32083 0.77265 0.87352 1.38453 1.43273 1.49123 1.95467 2.37668 2.58940 3.11295 3.33428 3.40851 3.68724 3.78301 3.95506 4.23612 4.37898 4.45029 4.48376 4.57340 4.72440 4.74528 4.95292 4.97962 5.04991 5.10278 5.41604 5.46895 5.52225 5.78618 6.06686 6.36184 6.79770 7.37505 8.89808 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.015817 B = 0.007948 C = 0.006335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.826080 B = 3522.065648 C = 4419.108123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.115 3.885 3 N -0.991 5.991 4 C 0.222 3.778 5 C -0.527 4.527 6 H 0.063 0.937 7 C 0.025 3.975 8 N -0.934 5.934 9 Si 0.915 3.085 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.246 1.246 13 S 2.799 3.201 14 O -0.994 6.994 15 O -1.013 7.013 16 N -1.098 6.098 17 C 0.160 3.840 18 C -0.081 4.081 19 S -0.310 6.310 20 C -0.085 4.085 21 H 0.049 0.951 22 H 0.054 0.946 23 H 0.089 0.911 24 H 0.081 0.919 25 H 0.087 0.913 26 H 0.043 0.957 27 H 0.034 0.966 28 H 0.264 0.736 29 H 0.425 0.575 30 H 0.129 0.871 31 H 0.092 0.908 32 H 0.118 0.882 33 H 0.126 0.874 34 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.103 -3.441 10.408 11.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.010 4.010 3 N -0.831 5.831 4 C 0.098 3.902 5 C -0.566 4.566 6 H 0.082 0.918 7 C -0.174 4.174 8 N -0.575 5.575 9 Si 0.740 3.260 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.170 1.170 13 S 2.807 3.193 14 O -0.977 6.977 15 O -0.997 6.997 16 N -0.858 5.858 17 C 0.050 3.950 18 C -0.231 4.231 19 S -0.085 6.085 20 C -0.236 4.236 21 H 0.068 0.932 22 H 0.073 0.927 23 H 0.108 0.892 24 H 0.099 0.901 25 H 0.105 0.895 26 H 0.061 0.939 27 H 0.052 0.948 28 H 0.074 0.926 29 H 0.260 0.740 30 H 0.147 0.853 31 H 0.111 0.889 32 H 0.136 0.864 33 H 0.145 0.855 34 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -2.890 -4.255 11.153 12.281 hybrid contribution -0.034 1.694 -1.399 2.197 sum -2.924 -2.561 9.754 10.500 Atomic orbital electron populations 1.22194 0.95433 1.03401 1.01707 1.21355 0.95015 0.81096 1.03507 1.57478 1.79261 1.24143 1.22211 1.19299 0.96745 0.91875 0.82320 1.21638 1.03473 1.22388 1.09133 0.91837 1.25534 0.95856 0.98520 0.97507 1.69994 1.22218 1.44049 1.21191 0.86195 0.81346 0.80504 0.77958 1.19914 1.21080 1.16968 1.01275 0.73227 0.72142 0.72683 1.93559 1.75399 1.72892 1.55883 1.93544 1.84989 1.34353 1.86845 1.55798 1.27866 1.13889 1.88243 1.22235 0.94736 0.84971 0.93077 1.24829 0.97360 1.00017 1.00885 1.89033 1.61065 1.41721 1.16719 1.25056 0.96849 1.00436 1.01215 0.93194 0.92732 0.89249 0.90067 0.89497 0.93876 0.94850 0.92640 0.73961 0.85293 0.88949 0.86366 0.85533 0.86661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.35 10.23 71.98 0.74 -3.61 16 2 C 0.12 3.38 6.06 86.37 0.52 3.90 16 3 N -0.99 -35.08 2.83 -519.86 -1.47 -36.55 16 4 C 0.22 9.42 4.52 85.63 0.39 9.81 16 5 C -0.53 -25.90 9.93 25.60 0.25 -25.65 16 6 H 0.06 3.30 8.06 -2.91 -0.02 3.27 16 7 C 0.03 1.32 5.47 84.66 0.46 1.78 16 8 N -0.93 -52.94 13.96 21.45 0.30 -52.64 16 9 Si 0.92 40.80 27.38 68.60 1.88 42.68 16 10 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 11 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 12 H -0.25 -10.17 6.68 99.48 0.66 -9.51 16 13 S 2.80 95.13 6.05 -56.49 -0.34 94.79 16 14 O -0.99 -34.04 16.67 -128.00 -2.13 -36.18 16 15 O -1.01 -41.23 16.81 -128.00 -2.15 -43.38 16 16 N -1.10 -30.68 5.80 -197.42 -1.15 -31.82 16 17 C 0.16 4.04 4.03 45.02 0.18 4.22 16 18 C -0.08 -2.14 7.73 72.00 0.56 -1.58 16 19 S -0.31 -7.90 24.80 -56.49 -1.40 -9.31 16 20 C -0.09 -1.80 7.76 71.99 0.56 -1.24 16 21 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 22 H 0.05 1.45 8.13 -2.39 -0.02 1.44 16 23 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 24 H 0.08 2.44 8.11 -2.39 -0.02 2.42 16 25 H 0.09 2.20 6.59 -2.39 -0.02 2.18 16 26 H 0.04 1.78 7.50 -2.39 -0.02 1.76 16 27 H 0.03 1.49 6.14 -2.39 -0.01 1.47 16 28 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 29 H 0.42 10.66 8.93 -96.74 -0.86 9.80 16 30 H 0.13 3.18 7.15 -2.39 -0.02 3.16 16 31 H 0.09 2.82 8.14 -2.39 -0.02 2.80 16 32 H 0.12 2.92 8.14 -2.38 -0.02 2.90 16 33 H 0.13 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.11 2.19 8.14 -2.38 -0.02 2.17 16 Total: -1.00 -62.88 308.69 -2.61 -65.49 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: 0.20 Total: 19.27 kcal Atomic # 6 Polarization: -16.03 SS G_CDS: 3.66 Total: -12.37 kcal Atomic # 7 Polarization: -118.69 SS G_CDS: -2.32 Total: -121.01 kcal Atomic # 8 Polarization: -75.27 SS G_CDS: -4.29 Total: -79.56 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 1.88 Total: 42.68 kcal Atomic # 16 Polarization: 87.23 SS G_CDS: -1.74 Total: 85.49 kcal Total: -62.88 -2.61 -65.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921867676.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.916 kcal (2) G-P(sol) polarization free energy of solvation -62.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds