Wall clock time and date at job start Tue Mar 31 2020 01:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.46624 * 2 1 4 4 C 1.50702 * 109.46918 * 240.00522 * 2 1 3 5 5 H 1.08002 * 119.99446 * 239.99482 * 4 2 1 6 6 C 1.37871 * 120.00072 * 60.00109 * 4 2 1 7 7 N 1.31516 * 119.99826 * 179.72119 * 6 4 2 8 8 Si 1.86800 * 120.00406 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46758 * 269.72576 * 8 6 4 10 10 H 1.48499 * 109.47026 * 29.72423 * 8 6 4 11 11 H 1.48496 * 109.47474 * 149.72459 * 8 6 4 12 12 N 1.46495 * 109.47194 * 120.00052 * 2 1 3 13 13 C 1.46507 * 119.99848 * 60.00407 * 12 2 1 14 14 S 1.65600 * 120.00190 * 240.00150 * 12 2 1 15 15 O 1.42105 * 106.39904 * 203.53992 * 14 12 2 16 16 O 1.42096 * 106.39936 * 336.46149 * 14 12 2 17 17 N 1.65595 * 107.21701 * 90.00283 * 14 12 2 18 18 C 1.46497 * 120.00498 * 64.99908 * 17 14 12 19 19 C 1.53043 * 113.15530 * 245.37598 * 18 17 14 20 20 S 1.81422 * 89.89213 * 211.84820 * 19 18 17 21 21 C 1.53036 * 113.15712 * 144.99793 * 18 17 14 22 22 H 1.08994 * 109.46846 * 59.99893 * 1 2 3 23 23 H 1.09001 * 109.46592 * 179.97438 * 1 2 3 24 24 H 1.08990 * 109.47127 * 299.99571 * 1 2 3 25 25 H 0.96999 * 120.00128 * 180.27192 * 7 6 4 26 26 H 1.08993 * 109.47215 * 89.99564 * 13 12 2 27 27 H 1.09001 * 109.46606 * 210.00169 * 13 12 2 28 28 H 1.09004 * 109.46774 * 329.99892 * 13 12 2 29 29 H 0.96997 * 120.00146 * 245.00072 * 17 14 12 30 30 H 1.09002 * 112.49212 * 15.21383 * 18 17 14 31 31 H 1.09002 * 113.14928 * 327.10954 * 19 18 17 32 32 H 1.08999 * 113.15067 * 96.58885 * 19 18 17 33 33 H 1.09006 * 113.15394 * 263.40891 * 21 18 17 34 34 H 1.09004 * 113.14789 * 32.84848 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4827 7 7 2.1422 -0.8559 -3.5566 8 14 0.6248 1.2792 -2.6541 9 1 -0.8024 0.8723 -2.7065 10 1 0.8421 2.1735 -1.4886 11 1 0.9805 1.9990 -3.9033 12 7 2.0184 -0.6906 1.1961 13 6 1.6646 -2.0933 1.4279 14 16 2.9705 0.1142 2.2862 15 8 3.7119 -0.8790 2.9814 16 8 3.5794 1.1829 1.5748 17 7 1.9607 0.8089 3.3998 18 6 1.1510 -0.0354 4.2817 19 6 -0.3528 0.1038 4.0338 20 16 -0.6685 -0.2133 5.7920 21 6 0.9712 0.5553 5.6819 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8899 25 1 1.9111 -0.5221 -4.4375 26 1 2.4158 -2.7377 0.9715 27 1 1.6239 -2.2853 2.5001 28 1 0.6905 -2.3002 0.9845 29 1 1.9054 1.7748 3.4682 30 1 1.4899 -1.0713 4.2938 31 1 -0.6444 1.1061 3.7201 32 1 -0.7529 -0.6712 3.3801 33 1 1.6801 0.1586 6.4087 34 1 0.9356 1.6448 5.6860 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000921868757.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:25:25 Heat of formation + Delta-G solvation = -41.214882 kcal Electronic energy + Delta-G solvation = -19205.358177 eV Core-core repulsion = 16199.745868 eV Total energy + Delta-G solvation = -3005.612309 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 280.070 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -37.82247 -36.84114 -36.46243 -35.43958 -32.55424 -31.67450 -30.11367 -26.56573 -25.89494 -25.06402 -22.12999 -21.03693 -19.30997 -17.61838 -17.24912 -16.98675 -16.39489 -15.96928 -15.49071 -14.96210 -14.57038 -13.78862 -13.68748 -13.39865 -13.22249 -12.91849 -12.47494 -12.36500 -12.25344 -12.03866 -11.94976 -11.69246 -11.57238 -11.39045 -11.26102 -11.13023 -10.60235 -10.49143 -10.21553 -9.83201 -9.59302 -9.46036 -8.68248 -8.21211 -8.07307 -6.16543 -4.17508 0.91100 1.50888 1.63880 3.17918 3.22957 3.29823 3.32856 3.88868 4.04299 4.30281 4.45351 4.51374 4.73170 5.02881 5.06854 5.12900 5.20205 5.39051 5.44341 5.77974 5.94288 6.11195 6.16172 6.24733 6.40403 6.50230 6.71908 6.82941 7.21360 7.32155 7.57280 8.42361 8.87902 9.42927 10.96433 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.024288 B = 0.006343 C = 0.005739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.574922 B = 4413.306132 C = 4877.764933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.240 3.760 3 H 0.057 0.943 4 C -0.523 4.523 5 H 0.082 0.918 6 C 0.074 3.926 7 N -0.893 5.893 8 Si 0.882 3.118 9 H -0.277 1.277 10 H -0.265 1.265 11 H -0.293 1.293 12 N -0.982 5.982 13 C 0.106 3.894 14 S 2.778 3.222 15 O -0.986 6.986 16 O -0.969 6.969 17 N -1.118 6.118 18 C 0.156 3.844 19 C -0.102 4.102 20 S -0.280 6.280 21 C -0.093 4.093 22 H 0.049 0.951 23 H 0.060 0.940 24 H 0.032 0.968 25 H 0.266 0.734 26 H 0.056 0.944 27 H 0.050 0.950 28 H 0.074 0.926 29 H 0.415 0.585 30 H 0.135 0.865 31 H 0.111 0.889 32 H 0.106 0.894 33 H 0.104 0.896 34 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.455 2.824 16.014 17.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.136 3.864 3 H 0.075 0.925 4 C -0.563 4.563 5 H 0.100 0.900 6 C -0.129 4.129 7 N -0.531 5.531 8 Si 0.712 3.288 9 H -0.204 1.204 10 H -0.190 1.190 11 H -0.221 1.221 12 N -0.824 5.824 13 C -0.040 4.040 14 S 2.786 3.214 15 O -0.969 6.969 16 O -0.953 6.953 17 N -0.875 5.875 18 C 0.045 3.955 19 C -0.252 4.252 20 S -0.056 6.056 21 C -0.243 4.243 22 H 0.068 0.932 23 H 0.079 0.921 24 H 0.051 0.949 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.068 0.932 28 H 0.093 0.907 29 H 0.249 0.751 30 H 0.153 0.847 31 H 0.130 0.870 32 H 0.125 0.875 33 H 0.123 0.877 34 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -5.425 2.128 16.726 17.712 hybrid contribution -0.476 1.633 -0.992 1.969 sum -5.901 3.761 15.734 17.220 Atomic orbital electron populations 1.22506 0.99141 1.01461 0.99069 1.19087 0.90318 0.93614 0.83406 0.92510 1.21147 1.32571 1.14372 0.88160 0.89950 1.24907 0.95744 0.96513 0.95721 1.69870 1.45041 1.40166 0.97982 0.86955 0.80451 0.83846 0.77569 1.20436 1.18958 1.22073 1.57418 1.70039 1.20011 1.34923 1.21247 1.02252 0.81696 0.98780 1.02100 0.73516 0.73326 0.72460 1.93573 1.68516 1.60506 1.74318 1.93628 1.73976 1.55995 1.71723 1.56437 1.61479 1.17345 1.52190 1.22242 0.89010 0.96423 0.87851 1.25113 0.98126 1.06894 0.95084 1.89030 1.26459 1.79430 1.10650 1.24826 0.95579 1.04010 0.99898 0.93243 0.92116 0.94864 0.92408 0.92503 0.93177 0.90746 0.75103 0.84721 0.87048 0.87511 0.87746 0.87193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.06 8.65 37.16 0.32 -2.74 16 2 C 0.24 5.22 2.21 -69.08 -0.15 5.07 16 3 H 0.06 1.31 5.97 -51.93 -0.31 1.00 16 4 C -0.52 -13.92 8.95 -34.44 -0.31 -14.23 16 5 H 0.08 2.39 7.89 -52.49 -0.41 1.98 16 6 C 0.07 2.05 5.45 -17.82 -0.10 1.96 16 7 N -0.89 -26.41 13.96 55.43 0.77 -25.64 16 8 Si 0.88 20.82 24.37 -169.99 -4.14 16.68 16 9 H -0.28 -6.25 6.88 56.52 0.39 -5.86 16 10 H -0.26 -5.94 6.52 56.52 0.37 -5.57 16 11 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 12 N -0.98 -17.92 3.12 -115.85 -0.36 -18.29 16 13 C 0.11 1.68 9.53 59.85 0.57 2.25 16 14 S 2.78 47.31 6.07 -107.50 -0.65 46.66 16 15 O -0.99 -18.32 16.71 -57.17 -0.96 -19.27 16 16 O -0.97 -20.23 16.70 -57.17 -0.95 -21.18 16 17 N -1.12 -12.91 5.80 -13.90 -0.08 -12.99 16 18 C 0.16 1.55 4.11 -67.89 -0.28 1.27 16 19 C -0.10 -0.96 7.75 37.18 0.29 -0.67 16 20 S -0.28 -2.88 24.80 -107.50 -2.67 -5.55 16 21 C -0.09 -0.78 7.73 37.18 0.29 -0.50 16 22 H 0.05 1.00 3.28 -51.93 -0.17 0.83 16 23 H 0.06 1.08 6.66 -51.93 -0.35 0.74 16 24 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 26 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 27 H 0.05 0.62 6.92 -51.93 -0.36 0.26 16 28 H 0.07 1.11 6.43 -51.93 -0.33 0.78 16 29 H 0.42 3.88 8.93 -34.47 -0.31 3.57 16 30 H 0.14 1.36 6.87 -51.93 -0.36 1.00 16 31 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.11 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 296.52 15.07 4.47 4.47 Total: -1.00 -32.86 296.52 -8.26 -41.12 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -4.32 Total: 1.59 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: 0.63 Total: -7.60 kcal Atomic # 7 Polarization: -57.25 SS G_CDS: 0.33 Total: -56.92 kcal Atomic # 8 Polarization: -38.55 SS G_CDS: -1.91 Total: -40.46 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.14 Total: 16.68 kcal Atomic # 16 Polarization: 44.43 SS G_CDS: -3.32 Total: 41.12 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -32.86 -8.26 -41.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921868757.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.098 kcal (2) G-P(sol) polarization free energy of solvation -32.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds