Wall clock time and date at job start Tue Mar 31 2020 01:25:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.46624 * 2 1 4 4 C 1.50702 * 109.46918 * 240.00522 * 2 1 3 5 5 H 1.08002 * 119.99446 * 239.99482 * 4 2 1 6 6 C 1.37871 * 120.00072 * 60.00109 * 4 2 1 7 7 N 1.31516 * 119.99826 * 179.72119 * 6 4 2 8 8 Si 1.86800 * 120.00406 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46758 * 269.72576 * 8 6 4 10 10 H 1.48499 * 109.47026 * 29.72423 * 8 6 4 11 11 H 1.48496 * 109.47474 * 149.72459 * 8 6 4 12 12 N 1.46495 * 109.47194 * 120.00052 * 2 1 3 13 13 C 1.46507 * 119.99848 * 60.00407 * 12 2 1 14 14 S 1.65600 * 120.00190 * 240.00150 * 12 2 1 15 15 O 1.42105 * 106.39904 * 203.53992 * 14 12 2 16 16 O 1.42096 * 106.39936 * 336.46149 * 14 12 2 17 17 N 1.65595 * 107.21701 * 90.00283 * 14 12 2 18 18 C 1.46497 * 120.00498 * 64.99908 * 17 14 12 19 19 C 1.53043 * 113.15530 * 245.37598 * 18 17 14 20 20 S 1.81422 * 89.89213 * 211.84820 * 19 18 17 21 21 C 1.53036 * 113.15712 * 144.99793 * 18 17 14 22 22 H 1.08994 * 109.46846 * 59.99893 * 1 2 3 23 23 H 1.09001 * 109.46592 * 179.97438 * 1 2 3 24 24 H 1.08990 * 109.47127 * 299.99571 * 1 2 3 25 25 H 0.96999 * 120.00128 * 180.27192 * 7 6 4 26 26 H 1.08993 * 109.47215 * 89.99564 * 13 12 2 27 27 H 1.09001 * 109.46606 * 210.00169 * 13 12 2 28 28 H 1.09004 * 109.46774 * 329.99892 * 13 12 2 29 29 H 0.96997 * 120.00146 * 245.00072 * 17 14 12 30 30 H 1.09002 * 112.49212 * 15.21383 * 18 17 14 31 31 H 1.09002 * 113.14928 * 327.10954 * 19 18 17 32 32 H 1.08999 * 113.15067 * 96.58885 * 19 18 17 33 33 H 1.09006 * 113.15394 * 263.40891 * 21 18 17 34 34 H 1.09004 * 113.14789 * 32.84848 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4827 7 7 2.1422 -0.8559 -3.5566 8 14 0.6248 1.2792 -2.6541 9 1 -0.8024 0.8723 -2.7065 10 1 0.8421 2.1735 -1.4886 11 1 0.9805 1.9990 -3.9033 12 7 2.0184 -0.6906 1.1961 13 6 1.6646 -2.0933 1.4279 14 16 2.9705 0.1142 2.2862 15 8 3.7119 -0.8790 2.9814 16 8 3.5794 1.1829 1.5748 17 7 1.9607 0.8089 3.3998 18 6 1.1510 -0.0354 4.2817 19 6 -0.3528 0.1038 4.0338 20 16 -0.6685 -0.2133 5.7920 21 6 0.9712 0.5553 5.6819 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3632 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8899 25 1 1.9111 -0.5221 -4.4375 26 1 2.4158 -2.7377 0.9715 27 1 1.6239 -2.2853 2.5001 28 1 0.6905 -2.3002 0.9845 29 1 1.9054 1.7748 3.4682 30 1 1.4899 -1.0713 4.2938 31 1 -0.6444 1.1061 3.7201 32 1 -0.7529 -0.6712 3.3801 33 1 1.6801 0.1586 6.4087 34 1 0.9356 1.6448 5.6860 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000921868757.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:25:25 Heat of formation + Delta-G solvation = -68.038787 kcal Electronic energy + Delta-G solvation = -19206.521349 eV Core-core repulsion = 16199.745868 eV Total energy + Delta-G solvation = -3006.775481 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 280.070 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -38.73526 -38.29982 -37.95920 -36.91637 -34.51116 -32.61443 -31.76324 -27.37314 -27.18427 -26.91642 -22.96490 -22.68084 -20.56081 -18.99437 -18.92928 -18.16041 -17.74312 -17.25055 -16.70192 -16.19567 -15.84445 -15.22239 -15.03725 -14.55094 -14.50893 -14.11298 -13.87785 -13.79975 -13.53290 -13.31552 -13.25990 -13.10952 -13.03144 -12.89649 -12.71145 -12.17608 -12.07688 -11.95582 -11.45028 -11.34320 -11.28789 -10.76874 -10.66003 -9.74697 -8.83799 -8.27381 -6.32424 -0.42672 0.82025 0.89007 1.32472 1.41405 1.49413 1.98375 2.34117 2.60708 3.07933 3.25334 3.42880 3.73555 3.78860 3.94071 4.25880 4.41251 4.50594 4.56265 4.65995 4.71739 4.75449 4.82641 4.89581 5.04708 5.17573 5.26211 5.51684 5.64272 5.82720 6.07488 6.36717 6.73064 7.32389 8.89464 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.024288 B = 0.006343 C = 0.005739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.574922 B = 4413.306132 C = 4877.764933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.243 3.757 3 H 0.048 0.952 4 C -0.526 4.526 5 H 0.039 0.961 6 C 0.013 3.987 7 N -0.947 5.947 8 Si 0.942 3.058 9 H -0.255 1.255 10 H -0.242 1.242 11 H -0.303 1.303 12 N -0.989 5.989 13 C 0.101 3.899 14 S 2.796 3.204 15 O -1.004 7.004 16 O -1.011 7.011 17 N -1.096 6.096 18 C 0.147 3.853 19 C -0.094 4.094 20 S -0.316 6.316 21 C -0.079 4.079 22 H 0.038 0.962 23 H 0.067 0.933 24 H 0.077 0.923 25 H 0.266 0.734 26 H 0.031 0.969 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.430 0.570 30 H 0.134 0.866 31 H 0.126 0.874 32 H 0.111 0.889 33 H 0.113 0.887 34 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.412 4.326 18.172 20.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.137 3.863 3 H 0.065 0.935 4 C -0.565 4.565 5 H 0.057 0.943 6 C -0.185 4.185 7 N -0.587 5.587 8 Si 0.768 3.232 9 H -0.180 1.180 10 H -0.166 1.166 11 H -0.231 1.231 12 N -0.830 5.830 13 C -0.045 4.045 14 S 2.805 3.195 15 O -0.988 6.988 16 O -0.995 6.995 17 N -0.858 5.858 18 C 0.037 3.963 19 C -0.244 4.244 20 S -0.091 6.091 21 C -0.229 4.229 22 H 0.056 0.944 23 H 0.086 0.914 24 H 0.096 0.904 25 H 0.075 0.925 26 H 0.050 0.950 27 H 0.105 0.895 28 H 0.102 0.898 29 H 0.267 0.733 30 H 0.152 0.848 31 H 0.144 0.856 32 H 0.129 0.871 33 H 0.131 0.869 34 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -7.391 3.622 18.919 20.632 hybrid contribution 0.218 1.076 -1.549 1.898 sum -7.173 4.698 17.370 19.371 Atomic orbital electron populations 1.22381 0.96101 1.02581 1.00620 1.18846 0.92527 0.92495 0.82460 0.93462 1.21498 1.31329 1.13064 0.90629 0.94277 1.25810 0.97463 0.99909 0.95316 1.70043 1.47499 1.42541 0.98643 0.85986 0.79551 0.79993 0.77699 1.18022 1.16607 1.23135 1.57339 1.70072 1.21049 1.34528 1.21406 1.01854 0.80137 1.01068 1.01301 0.73401 0.72417 0.72379 1.93548 1.69430 1.61290 1.74485 1.93567 1.75483 1.57285 1.73182 1.55845 1.60917 1.18235 1.50805 1.22486 0.89143 0.96299 0.88420 1.25130 0.97066 1.07919 0.94280 1.89274 1.27952 1.80006 1.11907 1.24845 0.94232 1.05098 0.98719 0.94355 0.91410 0.90405 0.92533 0.94978 0.89499 0.89764 0.73321 0.84802 0.85594 0.87074 0.86856 0.85124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.40 8.65 71.99 0.62 -4.77 16 2 C 0.24 10.20 2.21 44.25 0.10 10.30 16 3 H 0.05 2.10 5.97 -2.39 -0.01 2.09 16 4 C -0.53 -28.53 8.95 25.60 0.23 -28.30 16 5 H 0.04 2.39 7.89 -2.91 -0.02 2.36 16 6 C 0.01 0.72 5.45 84.65 0.46 1.18 16 7 N -0.95 -58.00 13.96 21.45 0.30 -57.70 16 8 Si 0.94 42.26 24.37 68.60 1.67 43.93 16 9 H -0.25 -10.44 6.88 99.48 0.68 -9.76 16 10 H -0.24 -9.91 6.52 99.48 0.65 -9.26 16 11 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 12 N -0.99 -34.78 3.12 -520.42 -1.62 -36.41 16 13 C 0.10 3.06 9.53 127.77 1.22 4.27 16 14 S 2.80 90.90 6.07 -56.49 -0.34 90.55 16 15 O -1.00 -36.07 16.71 -128.00 -2.14 -38.21 16 16 O -1.01 -41.44 16.70 -128.00 -2.14 -43.58 16 17 N -1.10 -21.65 5.80 -197.90 -1.15 -22.80 16 18 C 0.15 2.39 4.11 45.02 0.19 2.57 16 19 C -0.09 -1.39 7.75 72.00 0.56 -0.83 16 20 S -0.32 -5.55 24.80 -56.49 -1.40 -6.95 16 21 C -0.08 -1.03 7.73 71.99 0.56 -0.48 16 22 H 0.04 1.40 3.28 -2.39 -0.01 1.40 16 23 H 0.07 2.20 6.66 -2.39 -0.02 2.19 16 24 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 25 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 26 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.09 1.96 6.92 -2.39 -0.02 1.94 16 28 H 0.08 2.37 6.43 -2.38 -0.02 2.35 16 29 H 0.43 6.37 8.93 -96.75 -0.86 5.51 16 30 H 0.13 2.26 6.87 -2.39 -0.02 2.24 16 31 H 0.13 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.11 1.34 8.14 -2.38 -0.02 1.32 16 34 H 0.13 1.22 8.14 -2.38 -0.02 1.20 16 Total: -1.00 -73.58 296.52 -2.71 -76.30 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: 0.18 Total: 10.93 kcal Atomic # 6 Polarization: -19.98 SS G_CDS: 3.93 Total: -16.06 kcal Atomic # 7 Polarization: -114.44 SS G_CDS: -2.47 Total: -116.91 kcal Atomic # 8 Polarization: -77.51 SS G_CDS: -4.28 Total: -81.79 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 1.67 Total: 43.93 kcal Atomic # 16 Polarization: 85.34 SS G_CDS: -1.74 Total: 83.60 kcal Total: -73.58 -2.71 -76.30 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921868757.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.257 kcal (2) G-P(sol) polarization free energy of solvation -73.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds