Wall clock time and date at job start Tue Mar 31 2020 01:25:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.46503 * 119.99817 * 300.00252 * 12 2 1 14 14 S 1.65597 * 120.00227 * 119.99787 * 12 2 1 15 15 O 1.42100 * 106.40587 * 203.53991 * 14 12 2 16 16 O 1.42101 * 106.40301 * 336.46074 * 14 12 2 17 17 N 1.65598 * 107.21541 * 89.99985 * 14 12 2 18 18 C 1.46501 * 120.00034 * 65.00515 * 17 14 12 19 19 C 1.53051 * 113.15089 * 245.37184 * 18 17 14 20 20 S 1.81424 * 89.89068 * 211.85364 * 19 18 17 21 21 C 1.53045 * 113.15337 * 145.00028 * 18 17 14 22 22 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 24 24 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 25 25 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 26 26 H 1.08994 * 109.47665 * 90.00431 * 13 12 2 27 27 H 1.09008 * 109.46786 * 210.00039 * 13 12 2 28 28 H 1.08997 * 109.47360 * 329.99480 * 13 12 2 29 29 H 0.96998 * 120.00285 * 244.99932 * 17 14 12 30 30 H 1.08998 * 112.49653 * 15.21030 * 18 17 14 31 31 H 1.09003 * 113.14354 * 327.11474 * 19 18 17 32 32 H 1.08994 * 113.14959 * 96.58640 * 19 18 17 33 33 H 1.09005 * 113.14709 * 263.40517 * 21 18 17 34 34 H 1.08999 * 113.15047 * 32.84464 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0183 -0.6905 -1.1962 13 6 1.6643 -2.0930 -1.4282 14 16 2.9703 0.1144 -2.2862 15 8 2.8227 -0.5643 -3.5260 16 8 2.6903 1.4975 -2.1192 17 7 4.5436 -0.1041 -1.8180 18 6 5.1357 -1.4439 -1.8417 19 6 5.5002 -1.9654 -0.4497 20 16 6.8916 -2.8857 -1.1627 21 6 6.6175 -1.4404 -2.2244 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5139 -0.8900 25 1 0.7089 1.1611 3.4845 26 1 0.7376 -2.1442 -1.9996 27 1 2.4629 -2.5817 -1.9866 28 1 1.5295 -2.5968 -0.4711 29 1 5.0733 0.6551 -1.5281 30 1 4.5444 -2.1509 -2.4236 31 1 5.8137 -1.1769 0.2346 32 1 4.7345 -2.6111 -0.0199 33 1 6.7876 -1.6465 -3.2812 34 1 7.1462 -0.5505 -1.8828 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000921868759.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:25:27 Heat of formation + Delta-G solvation = -74.425176 kcal Electronic energy + Delta-G solvation = -19267.041943 eV Core-core repulsion = 16259.989527 eV Total energy + Delta-G solvation = -3007.052416 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 280.070 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.70044 -38.18909 -37.80454 -36.88973 -34.47040 -32.57078 -30.89311 -27.29304 -27.15096 -26.95694 -22.95182 -22.58204 -20.59569 -18.85553 -18.36195 -18.31441 -17.66331 -17.08804 -16.63440 -16.18761 -15.73406 -15.10659 -14.82662 -14.59660 -14.38266 -13.86107 -13.69290 -13.49256 -13.30182 -13.20953 -13.16271 -13.01197 -12.95115 -12.68055 -12.65916 -12.21382 -12.14472 -12.03980 -11.87658 -11.37541 -11.13075 -10.63876 -10.45319 -9.63430 -8.85385 -8.05624 -6.19310 -0.31518 0.79873 0.89026 1.47871 1.49667 1.55279 2.01713 2.47657 2.64411 3.23669 3.28030 3.49019 3.73088 3.79813 4.06173 4.31237 4.40831 4.56522 4.73696 4.76208 4.84182 4.96211 5.01830 5.12795 5.20080 5.31142 5.64857 5.70598 5.87904 6.04710 6.16563 6.33176 6.90320 7.50220 8.98784 Molecular weight = 280.07amu Principal moments of inertia in cm(-1) A = 0.015309 B = 0.008452 C = 0.006127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.495436 B = 3311.962223 C = 4568.999104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.274 3.726 3 H 0.027 0.973 4 C -0.522 4.522 5 H 0.075 0.925 6 C 0.018 3.982 7 N -0.919 5.919 8 Si 0.952 3.048 9 H -0.294 1.294 10 H -0.271 1.271 11 H -0.270 1.270 12 N -0.994 5.994 13 C 0.097 3.903 14 S 2.797 3.203 15 O -1.003 7.003 16 O -1.015 7.015 17 N -1.100 6.100 18 C 0.153 3.847 19 C -0.093 4.093 20 S -0.313 6.313 21 C -0.076 4.076 22 H 0.043 0.957 23 H 0.068 0.932 24 H 0.018 0.982 25 H 0.262 0.738 26 H 0.051 0.949 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.426 0.574 30 H 0.137 0.863 31 H 0.113 0.887 32 H 0.101 0.899 33 H 0.119 0.881 34 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.769 -5.591 -7.200 12.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.170 3.830 3 H 0.045 0.955 4 C -0.561 4.561 5 H 0.093 0.907 6 C -0.182 4.182 7 N -0.558 5.558 8 Si 0.778 3.222 9 H -0.221 1.221 10 H -0.197 1.197 11 H -0.195 1.195 12 N -0.836 5.836 13 C -0.049 4.049 14 S 2.806 3.194 15 O -0.987 6.987 16 O -1.000 7.000 17 N -0.860 5.860 18 C 0.042 3.958 19 C -0.243 4.243 20 S -0.089 6.089 21 C -0.226 4.226 22 H 0.062 0.938 23 H 0.086 0.914 24 H 0.037 0.963 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.262 0.738 30 H 0.155 0.845 31 H 0.132 0.868 32 H 0.120 0.880 33 H 0.138 0.862 34 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 9.103 -6.309 -7.737 13.511 hybrid contribution -0.263 0.888 1.521 1.781 sum 8.841 -5.422 -6.216 12.091 Atomic orbital electron populations 1.21953 0.98196 1.00000 0.99830 1.18379 0.91730 0.91519 0.81384 0.95486 1.21600 1.31255 1.12996 0.90277 0.90706 1.25627 0.95333 0.95562 1.01663 1.70011 1.37578 1.24057 1.24186 0.85710 0.78828 0.78700 0.78925 1.22061 1.19653 1.19530 1.57565 1.65056 1.22420 1.38540 1.21436 1.00560 0.80531 1.02341 1.01238 0.73111 0.72033 0.72979 1.93544 1.86436 1.76278 1.42396 1.93556 1.84428 1.34756 1.87228 1.55839 1.31162 1.15007 1.83969 1.22408 0.94728 0.83936 0.94689 1.25085 0.96866 1.00666 1.01713 1.89093 1.48921 1.33101 1.37763 1.24826 0.96153 0.97330 1.04289 0.93799 0.91375 0.96335 0.92921 0.93083 0.90537 0.90364 0.73804 0.84546 0.86813 0.88027 0.86234 0.85454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.44 8.97 71.98 0.65 -5.79 16 2 C 0.27 12.57 2.62 44.24 0.12 12.68 16 3 H 0.03 1.42 6.91 -2.39 -0.02 1.41 16 4 C -0.52 -24.61 7.99 25.60 0.20 -24.40 16 5 H 0.07 3.28 7.33 -2.91 -0.02 3.26 16 6 C 0.02 0.89 5.30 84.66 0.45 1.34 16 7 N -0.92 -49.49 11.32 21.45 0.24 -49.24 16 8 Si 0.95 39.86 29.54 68.60 2.03 41.88 16 9 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 10 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 11 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 12 N -0.99 -36.77 3.12 -520.45 -1.62 -38.39 16 13 C 0.10 2.97 9.28 127.77 1.19 4.15 16 14 S 2.80 96.89 6.06 -56.49 -0.34 96.55 16 15 O -1.00 -36.04 16.71 -128.00 -2.14 -38.18 16 16 O -1.02 -43.36 16.70 -128.00 -2.14 -45.50 16 17 N -1.10 -28.06 5.80 -197.85 -1.15 -29.21 16 18 C 0.15 3.34 4.11 45.02 0.19 3.53 16 19 C -0.09 -2.16 7.75 72.00 0.56 -1.60 16 20 S -0.31 -7.12 24.79 -56.49 -1.40 -8.52 16 21 C -0.08 -1.34 7.73 72.00 0.56 -0.78 16 22 H 0.04 1.86 7.67 -2.39 -0.02 1.84 16 23 H 0.07 3.48 6.07 -2.39 -0.01 3.47 16 24 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 25 H 0.26 13.61 8.31 -92.71 -0.77 12.84 16 26 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.08 1.89 6.92 -2.38 -0.02 1.88 16 28 H 0.08 2.45 7.02 -2.39 -0.02 2.43 16 29 H 0.43 9.31 8.93 -96.75 -0.86 8.45 16 30 H 0.14 2.88 6.87 -2.39 -0.02 2.87 16 31 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 32 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 33 H 0.12 1.75 8.14 -2.38 -0.02 1.73 16 34 H 0.13 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -62.23 304.03 -2.37 -64.60 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: 0.25 Total: 16.90 kcal Atomic # 6 Polarization: -14.78 SS G_CDS: 3.90 Total: -10.88 kcal Atomic # 7 Polarization: -114.32 SS G_CDS: -2.53 Total: -116.85 kcal Atomic # 8 Polarization: -79.40 SS G_CDS: -4.28 Total: -83.67 kcal Atomic # 14 Polarization: 39.86 SS G_CDS: 2.03 Total: 41.88 kcal Atomic # 16 Polarization: 89.77 SS G_CDS: -1.74 Total: 88.03 kcal Total: -62.23 -2.37 -64.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921868759.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.827 kcal (2) G-P(sol) polarization free energy of solvation -62.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds