Wall clock time and date at job start Tue Mar 31 2020 01:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99707 * 2 1 4 4 H 1.48505 * 109.46698 * 239.99916 * 3 2 1 5 5 H 1.48495 * 109.47266 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47057 * 120.00013 * 3 2 1 7 7 C 1.37877 * 119.99980 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99603 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99905 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.46834 * 60.00091 * 9 7 2 11 11 N 1.46502 * 109.47052 * 179.97438 * 9 7 2 12 12 C 1.34777 * 120.00033 * 205.00266 * 11 9 7 13 13 O 1.21277 * 119.99901 * 359.97438 * 12 11 9 14 14 C 1.50696 * 119.99830 * 180.02562 * 12 11 9 15 15 H 1.08998 * 115.56755 * 61.46685 * 14 12 11 16 16 C 1.53000 * 117.49577 * 207.15990 * 14 12 11 17 17 C 1.53004 * 60.00297 * 107.48930 * 16 14 12 18 18 H 1.09001 * 117.49872 * 107.48643 * 17 16 14 19 19 C 1.50695 * 117.49720 * 252.51384 * 17 16 14 20 20 N 1.34783 * 119.99921 * 201.34624 * 19 17 16 21 21 O 1.21278 * 120.00518 * 21.34273 * 19 17 16 22 22 C 1.52999 * 109.47204 * 300.00042 * 9 7 2 23 23 F 1.39904 * 109.46581 * 299.99655 * 22 9 7 24 24 F 1.39896 * 109.47220 * 59.99958 * 22 9 7 25 25 F 1.39899 * 109.46822 * 180.02562 * 22 9 7 26 26 H 0.97000 * 120.00235 * 359.97438 * 1 2 3 27 27 H 0.96997 * 119.99861 * 24.99836 * 11 9 7 28 28 H 1.08993 * 117.50153 * 0.02562 * 16 14 12 29 29 H 1.09008 * 117.51501 * 214.96396 * 16 14 12 30 30 H 0.97008 * 119.99937 * 0.02562 * 20 19 17 31 31 H 0.96998 * 120.00099 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.6247 -2.5570 -0.8897 11 7 2.2030 -3.6127 0.0005 12 6 1.8369 -4.8123 -0.4928 13 8 0.7192 -4.9701 -0.9363 14 6 2.8160 -5.9578 -0.4922 15 1 3.1673 -6.2760 0.4893 16 6 2.6425 -7.0359 -1.5640 17 6 3.8035 -6.0437 -1.6579 18 1 4.8043 -6.4184 -1.4430 19 6 3.7225 -4.9763 -2.7184 20 7 4.8445 -4.3624 -3.1438 21 8 2.6478 -4.6695 -3.1893 22 6 0.3709 -2.5799 1.2494 23 9 1.1749 -2.5056 2.3920 24 9 -0.5382 -1.5166 1.2489 25 9 -0.3281 -3.7917 1.2496 26 1 -0.4850 0.8400 0.0004 27 1 3.0968 -3.4866 0.3555 28 1 1.8205 -6.9163 -2.2697 29 1 2.8798 -8.0634 -1.2878 30 1 5.7042 -4.6080 -2.7674 31 1 4.7924 -3.6755 -3.8267 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928799469.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:57 Heat of formation + Delta-G solvation = -186.031158 kcal Electronic energy + Delta-G solvation = -23263.062996 eV Core-core repulsion = 19131.117419 eV Total energy + Delta-G solvation = -4131.945577 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.082 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.30185 -45.95708 -45.56483 -40.15242 -38.36485 -35.75299 -34.47320 -33.48950 -32.47544 -28.55483 -25.00500 -24.52687 -23.70447 -21.16313 -20.25970 -19.46823 -17.98688 -17.04851 -16.89202 -16.77903 -16.53860 -15.98796 -15.45396 -15.06525 -14.81079 -14.31666 -14.21741 -13.63639 -13.02376 -12.86589 -12.82552 -12.43309 -12.35480 -12.23089 -11.94251 -11.83776 -11.74601 -11.18434 -10.87221 -10.77372 -10.63342 -10.55942 -10.32146 -9.83153 -9.62552 -9.55129 -9.11289 -8.67544 -8.16571 -6.18774 -4.42418 2.48371 3.20882 3.25114 3.27307 3.32630 3.47838 3.71999 4.06922 4.23884 4.61557 4.71406 4.80719 4.95558 4.97625 5.03622 5.43202 5.65702 5.73572 5.91941 5.93689 6.18933 6.27802 6.88426 7.04094 7.26672 7.40817 7.52934 7.68345 8.40662 8.42310 8.54506 9.00428 9.24783 10.72956 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.018555 B = 0.007502 C = 0.005935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.682649 B = 3731.245827 C = 4716.371560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.064 3.936 3 Si 0.915 3.085 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.549 4.549 8 H 0.075 0.925 9 C 0.248 3.752 10 H 0.085 0.915 11 N -0.708 5.708 12 C 0.535 3.465 13 O -0.517 6.517 14 C -0.153 4.153 15 H 0.135 0.865 16 C -0.116 4.116 17 C -0.181 4.181 18 H 0.126 0.874 19 C 0.536 3.464 20 N -0.853 5.853 21 O -0.515 6.515 22 C 0.417 3.583 23 F -0.210 7.210 24 F -0.137 7.137 25 F -0.218 7.218 26 H 0.268 0.732 27 H 0.395 0.605 28 H 0.117 0.883 29 H 0.110 0.890 30 H 0.398 0.602 31 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.431 -9.387 -1.102 14.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.145 4.145 3 Si 0.741 3.259 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.586 4.586 8 H 0.093 0.907 9 C 0.142 3.858 10 H 0.103 0.897 11 N -0.357 5.357 12 C 0.319 3.681 13 O -0.392 6.392 14 C -0.175 4.175 15 H 0.152 0.848 16 C -0.153 4.153 17 C -0.202 4.202 18 H 0.144 0.856 19 C 0.319 3.681 20 N -0.417 5.417 21 O -0.389 6.389 22 C 0.360 3.640 23 F -0.192 7.192 24 F -0.118 7.118 25 F -0.200 7.200 26 H 0.079 0.921 27 H 0.228 0.772 28 H 0.135 0.865 29 H 0.128 0.872 30 H 0.226 0.774 31 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 9.578 -9.284 -1.606 13.435 hybrid contribution 1.317 1.105 0.521 1.796 sum 10.895 -8.179 -1.085 13.666 Atomic orbital electron populations 1.70395 1.05835 1.27377 1.43670 1.25085 0.95154 1.00060 0.94163 0.86284 0.79342 0.81473 0.78774 1.19883 1.20860 1.19876 1.20796 0.93576 0.88175 1.56046 0.90727 1.19678 0.88785 0.85777 0.91568 0.89735 1.45926 1.16901 1.10427 1.62471 1.19354 0.87688 0.83010 0.78054 1.90697 1.21051 1.82574 1.44853 1.22353 0.99641 0.99824 0.95644 0.84755 1.22990 0.98102 0.93956 1.00279 1.22302 0.97561 1.01643 0.98736 0.85582 1.19602 0.84166 0.81885 0.82405 1.43709 1.09315 1.43388 1.45289 1.90880 1.27831 1.63596 1.56559 1.23170 0.80918 0.72776 0.87093 1.92981 1.74464 1.96196 1.55583 1.93401 1.68413 1.53787 1.96195 1.93066 1.81526 1.48413 1.96974 0.92108 0.77153 0.86481 0.87155 0.77427 0.76629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.72 9.50 55.43 0.53 -23.19 16 2 C 0.06 1.71 5.20 -17.82 -0.09 1.62 16 3 Si 0.91 20.48 29.54 -169.99 -5.02 15.45 16 4 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 7 C -0.55 -14.41 8.46 -34.44 -0.29 -14.70 16 8 H 0.07 1.84 7.74 -52.49 -0.41 1.43 16 9 C 0.25 6.43 2.21 -69.08 -0.15 6.28 16 10 H 0.09 2.53 7.58 -51.93 -0.39 2.14 16 11 N -0.71 -15.10 4.99 -54.93 -0.27 -15.37 16 12 C 0.54 11.10 5.19 -10.99 -0.06 11.04 16 13 O -0.52 -13.07 15.11 5.56 0.08 -12.98 16 14 C -0.15 -2.18 6.18 -91.77 -0.57 -2.74 16 15 H 0.13 1.47 8.14 -51.93 -0.42 1.05 16 16 C -0.12 -1.45 9.56 -26.73 -0.26 -1.71 16 17 C -0.18 -2.10 6.19 -91.77 -0.57 -2.67 16 18 H 0.13 0.90 8.14 -51.93 -0.42 0.48 16 19 C 0.54 7.94 7.38 -10.99 -0.08 7.86 16 20 N -0.85 -8.77 8.87 31.22 0.28 -8.49 16 21 O -0.51 -10.67 15.97 5.56 0.09 -10.58 16 22 C 0.42 11.05 2.81 37.16 0.10 11.15 16 23 F -0.21 -5.29 16.94 2.25 0.04 -5.25 16 24 F -0.14 -3.91 12.91 2.25 0.03 -3.88 16 25 F -0.22 -5.74 15.68 2.25 0.04 -5.71 16 26 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 27 H 0.40 7.22 8.54 -40.82 -0.35 6.87 16 28 H 0.12 1.85 7.62 -51.93 -0.40 1.46 16 29 H 0.11 0.96 8.14 -51.92 -0.42 0.54 16 30 H 0.40 2.52 8.83 -40.82 -0.36 2.16 16 31 H 0.40 4.09 8.93 -40.82 -0.36 3.72 16 LS Contribution 285.98 15.07 4.31 4.31 Total: -1.00 -35.45 285.98 -4.54 -39.99 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -2.67 Total: 9.57 kcal Atomic # 6 Polarization: 18.10 SS G_CDS: -1.96 Total: 16.14 kcal Atomic # 7 Polarization: -47.59 SS G_CDS: 0.53 Total: -47.06 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: 0.17 Total: -23.57 kcal Atomic # 9 Polarization: -14.93 SS G_CDS: 0.10 Total: -14.83 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -35.45 -4.54 -39.99 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928799469.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.046 kcal (2) G-P(sol) polarization free energy of solvation -35.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds