Wall clock time and date at job start Tue Mar 31 2020 01:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99707 * 2 1 4 4 H 1.48505 * 109.46698 * 239.99916 * 3 2 1 5 5 H 1.48495 * 109.47266 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47057 * 120.00013 * 3 2 1 7 7 C 1.37877 * 119.99980 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99603 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99905 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.46834 * 60.00091 * 9 7 2 11 11 N 1.46502 * 109.47052 * 179.97438 * 9 7 2 12 12 C 1.34777 * 120.00033 * 205.00266 * 11 9 7 13 13 O 1.21277 * 119.99901 * 359.97438 * 12 11 9 14 14 C 1.50696 * 119.99830 * 180.02562 * 12 11 9 15 15 H 1.08998 * 115.56755 * 61.46685 * 14 12 11 16 16 C 1.53000 * 117.49577 * 207.15990 * 14 12 11 17 17 C 1.53004 * 60.00297 * 107.48930 * 16 14 12 18 18 H 1.09001 * 117.49872 * 107.48643 * 17 16 14 19 19 C 1.50695 * 117.49720 * 252.51384 * 17 16 14 20 20 N 1.34783 * 119.99921 * 201.34624 * 19 17 16 21 21 O 1.21278 * 120.00518 * 21.34273 * 19 17 16 22 22 C 1.52999 * 109.47204 * 300.00042 * 9 7 2 23 23 F 1.39904 * 109.46581 * 299.99655 * 22 9 7 24 24 F 1.39896 * 109.47220 * 59.99958 * 22 9 7 25 25 F 1.39899 * 109.46822 * 180.02562 * 22 9 7 26 26 H 0.97000 * 120.00235 * 359.97438 * 1 2 3 27 27 H 0.96997 * 119.99861 * 24.99836 * 11 9 7 28 28 H 1.08993 * 117.50153 * 0.02562 * 16 14 12 29 29 H 1.09008 * 117.51501 * 214.96396 * 16 14 12 30 30 H 0.97008 * 119.99937 * 0.02562 * 20 19 17 31 31 H 0.96998 * 120.00099 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.6247 -2.5570 -0.8897 11 7 2.2030 -3.6127 0.0005 12 6 1.8369 -4.8123 -0.4928 13 8 0.7192 -4.9701 -0.9363 14 6 2.8160 -5.9578 -0.4922 15 1 3.1673 -6.2760 0.4893 16 6 2.6425 -7.0359 -1.5640 17 6 3.8035 -6.0437 -1.6579 18 1 4.8043 -6.4184 -1.4430 19 6 3.7225 -4.9763 -2.7184 20 7 4.8445 -4.3624 -3.1438 21 8 2.6478 -4.6695 -3.1893 22 6 0.3709 -2.5799 1.2494 23 9 1.1749 -2.5056 2.3920 24 9 -0.5382 -1.5166 1.2489 25 9 -0.3281 -3.7917 1.2496 26 1 -0.4850 0.8400 0.0004 27 1 3.0968 -3.4866 0.3555 28 1 1.8205 -6.9163 -2.2697 29 1 2.8798 -8.0634 -1.2878 30 1 5.7042 -4.6080 -2.7674 31 1 4.7924 -3.6755 -3.8267 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928799469.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:56 Heat of formation + Delta-G solvation = -216.014750 kcal Electronic energy + Delta-G solvation = -23264.363182 eV Core-core repulsion = 19131.117419 eV Total energy + Delta-G solvation = -4133.245763 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.082 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.45070 -48.08187 -47.76053 -41.43368 -39.86513 -37.02623 -36.30657 -34.56619 -34.43700 -30.49996 -26.69228 -26.10299 -25.03243 -23.00420 -21.54118 -20.92376 -19.47956 -18.89061 -18.78034 -18.55479 -18.02726 -17.76239 -16.98541 -16.79043 -16.29232 -15.90567 -15.36182 -15.14687 -15.01852 -14.79342 -14.50657 -14.44809 -14.33338 -14.16461 -14.04985 -13.86933 -13.09920 -12.90499 -12.78290 -12.62729 -12.26272 -11.67111 -11.61522 -11.52613 -11.08908 -10.76042 -10.69625 -10.57850 -10.03415 -8.22444 -6.54204 1.30829 1.43104 1.46845 1.55266 1.83214 2.14353 2.36820 2.49933 2.60977 2.90707 2.95822 3.63667 3.73242 3.78048 3.82500 3.91170 4.11022 4.21548 4.39403 4.76353 4.87706 4.94258 5.17312 5.42495 5.54761 5.63598 5.93650 6.49823 6.55134 6.75672 7.15175 7.42955 7.45059 8.70518 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.018555 B = 0.007502 C = 0.005935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.682649 B = 3731.245827 C = 4716.371560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.010 3.990 3 Si 0.987 3.013 4 H -0.263 1.263 5 H -0.285 1.285 6 H -0.261 1.261 7 C -0.559 4.559 8 H 0.092 0.908 9 C 0.255 3.745 10 H 0.031 0.969 11 N -0.701 5.701 12 C 0.524 3.476 13 O -0.575 6.575 14 C -0.164 4.164 15 H 0.180 0.820 16 C -0.115 4.115 17 C -0.154 4.154 18 H 0.191 0.809 19 C 0.520 3.480 20 N -0.829 5.829 21 O -0.589 6.589 22 C 0.415 3.585 23 F -0.200 7.200 24 F -0.151 7.151 25 F -0.220 7.220 26 H 0.268 0.732 27 H 0.412 0.588 28 H 0.072 0.928 29 H 0.160 0.840 30 H 0.421 0.579 31 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.193 -10.149 -0.236 18.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.195 4.195 3 Si 0.809 3.191 4 H -0.188 1.188 5 H -0.210 1.210 6 H -0.185 1.185 7 C -0.595 4.595 8 H 0.110 0.890 9 C 0.147 3.853 10 H 0.049 0.951 11 N -0.352 5.352 12 C 0.312 3.688 13 O -0.453 6.453 14 C -0.185 4.185 15 H 0.197 0.803 16 C -0.153 4.153 17 C -0.174 4.174 18 H 0.208 0.792 19 C 0.305 3.695 20 N -0.393 5.393 21 O -0.468 6.468 22 C 0.359 3.641 23 F -0.182 7.182 24 F -0.132 7.132 25 F -0.202 7.202 26 H 0.078 0.922 27 H 0.248 0.752 28 H 0.091 0.909 29 H 0.178 0.822 30 H 0.253 0.747 31 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 13.458 -10.072 -0.721 16.825 hybrid contribution 0.143 1.309 0.195 1.331 sum 13.601 -8.763 -0.526 16.188 Atomic orbital electron populations 1.70550 1.07673 1.28205 1.44745 1.26101 0.95956 1.03998 0.93454 0.85168 0.77985 0.76441 0.79468 1.18761 1.21004 1.18503 1.21160 0.94403 0.88267 1.55714 0.88981 1.19183 0.89009 0.87901 0.89177 0.95111 1.45799 1.16800 1.09813 1.62794 1.20567 0.88246 0.83979 0.76016 1.90664 1.24113 1.83601 1.46930 1.22366 0.99658 0.97750 0.98765 0.80254 1.23114 0.97471 0.96281 0.98432 1.22560 0.99935 0.99550 0.95399 0.79228 1.20361 0.83912 0.82475 0.82763 1.43569 1.09406 1.42045 1.44266 1.90870 1.30709 1.65996 1.59250 1.23238 0.80842 0.72322 0.87708 1.92983 1.74056 1.96145 1.54973 1.93372 1.69008 1.54538 1.96318 1.93056 1.81658 1.48443 1.97026 0.92212 0.75187 0.90893 0.82191 0.74663 0.76543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -50.96 9.50 21.45 0.20 -50.76 16 2 C 0.01 0.52 5.20 84.65 0.44 0.96 16 3 Si 0.99 41.52 29.54 68.60 2.03 43.55 16 4 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 5 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 6 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 7 C -0.56 -29.43 8.46 25.60 0.22 -29.22 16 8 H 0.09 4.40 7.74 -2.91 -0.02 4.38 16 9 C 0.25 13.66 2.21 44.24 0.10 13.76 16 10 H 0.03 1.99 7.58 -2.38 -0.02 1.97 16 11 N -0.70 -29.97 4.99 -446.09 -2.22 -32.20 16 12 C 0.52 21.94 5.19 87.66 0.45 22.39 16 13 O -0.57 -30.59 15.11 -3.02 -0.05 -30.64 16 14 C -0.16 -4.21 6.18 -11.54 -0.07 -4.28 16 15 H 0.18 2.99 8.14 -2.39 -0.02 2.97 16 16 C -0.12 -2.61 9.56 30.60 0.29 -2.32 16 17 C -0.15 -2.96 6.19 -11.54 -0.07 -3.03 16 18 H 0.19 1.28 8.14 -2.39 -0.02 1.26 16 19 C 0.52 14.64 7.38 87.65 0.65 15.29 16 20 N -0.83 -14.88 8.87 -173.53 -1.54 -16.42 16 21 O -0.59 -25.26 15.97 -3.02 -0.05 -25.31 16 22 C 0.42 22.58 2.81 71.98 0.20 22.79 16 23 F -0.20 -10.00 16.94 44.97 0.76 -9.23 16 24 F -0.15 -8.93 12.91 44.97 0.58 -8.35 16 25 F -0.22 -11.98 15.68 44.97 0.70 -11.27 16 26 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 27 H 0.41 14.42 8.54 -92.71 -0.79 13.63 16 28 H 0.07 2.36 7.62 -2.39 -0.02 2.34 16 29 H 0.16 1.99 8.14 -2.38 -0.02 1.97 16 30 H 0.42 3.50 8.83 -92.70 -0.82 2.68 16 31 H 0.40 7.54 8.93 -92.71 -0.83 6.71 16 Total: -1.00 -84.56 285.98 1.42 -83.14 By element: Atomic # 1 Polarization: 22.36 SS G_CDS: -1.20 Total: 21.15 kcal Atomic # 6 Polarization: 34.14 SS G_CDS: 2.21 Total: 36.35 kcal Atomic # 7 Polarization: -95.82 SS G_CDS: -3.56 Total: -99.38 kcal Atomic # 8 Polarization: -55.85 SS G_CDS: -0.09 Total: -55.95 kcal Atomic # 9 Polarization: -30.90 SS G_CDS: 2.05 Total: -28.86 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.55 kcal Total: -84.56 1.42 -83.14 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928799469.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.878 kcal (2) G-P(sol) polarization free energy of solvation -84.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -217.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -216.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds