Wall clock time and date at job start Tue Mar 31 2020 01:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00263 * 2 1 4 4 H 1.48495 * 109.47271 * 239.99793 * 3 2 1 5 5 H 1.48502 * 109.46731 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46803 * 119.99840 * 3 2 1 7 7 C 1.37883 * 119.99710 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99891 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00063 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.47023 * 299.99797 * 9 7 2 11 11 N 1.46494 * 109.46978 * 179.97438 * 9 7 2 12 12 C 1.34775 * 119.99694 * 154.99766 * 11 9 7 13 13 O 1.21280 * 120.00487 * 0.02562 * 12 11 9 14 14 C 1.50703 * 120.00002 * 179.97438 * 12 11 9 15 15 H 1.09004 * 115.55105 * 59.85830 * 14 12 11 16 16 C 1.53002 * 117.50273 * 205.52847 * 14 12 11 17 17 C 1.53001 * 60.00185 * 107.48881 * 16 14 12 18 18 H 1.09001 * 117.49934 * 107.48773 * 17 16 14 19 19 C 1.50700 * 117.50243 * 252.51158 * 17 16 14 20 20 N 1.34773 * 120.00163 * 182.20992 * 19 17 16 21 21 O 1.21280 * 119.99500 * 2.21375 * 19 17 16 22 22 C 1.52999 * 109.47009 * 59.99697 * 9 7 2 23 23 F 1.39899 * 109.47062 * 60.00140 * 22 9 7 24 24 F 1.39902 * 109.46719 * 180.02562 * 22 9 7 25 25 F 1.39894 * 109.47328 * 299.99993 * 22 9 7 26 26 H 0.96998 * 119.99753 * 359.97438 * 1 2 3 27 27 H 0.96995 * 120.00102 * 334.99999 * 11 9 7 28 28 H 1.09001 * 117.49936 * 214.98138 * 16 14 12 29 29 H 1.08997 * 117.49592 * 0.02562 * 16 14 12 30 30 H 0.97002 * 120.00083 * 0.02562 * 20 19 17 31 31 H 0.97000 * 119.99842 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 1 0.6239 -2.5575 0.8880 11 7 2.2029 -3.6127 -0.0027 12 6 1.8367 -4.8127 0.4896 13 8 0.7190 -4.9709 0.9329 14 6 2.8157 -5.9584 0.4880 15 1 3.7349 -5.7921 1.0499 16 6 2.2431 -7.3771 0.4744 17 6 2.9070 -6.8081 -0.7811 18 1 3.8863 -7.2007 -1.0546 19 6 2.0109 -6.4352 -1.9340 20 7 2.5459 -5.9713 -3.0807 21 8 0.8083 -6.5526 -1.8298 22 6 0.3717 -2.5793 -1.2513 23 9 1.1765 -2.5045 -2.3932 24 9 -0.3282 -3.7906 -1.2520 25 9 -0.5373 -1.5160 -1.2509 26 1 -0.4850 0.8400 0.0004 27 1 3.0967 -3.4863 -0.3576 28 1 2.7856 -8.1442 1.0270 29 1 1.1582 -7.4818 0.4661 30 1 3.5078 -5.8777 -3.1641 31 1 1.9691 -5.7309 -3.8226 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928799480.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:59 Heat of formation + Delta-G solvation = -186.411274 kcal Electronic energy + Delta-G solvation = -23674.359855 eV Core-core repulsion = 19542.397795 eV Total energy + Delta-G solvation = -4131.962060 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.082 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.24571 -45.88627 -45.53152 -40.11735 -38.41493 -35.75390 -34.53591 -33.41228 -32.52556 -28.59868 -25.00785 -24.50800 -23.70178 -21.16232 -20.23419 -19.48211 -17.97489 -16.95472 -16.88417 -16.75254 -16.53558 -15.94077 -15.49901 -15.31385 -14.83811 -14.32855 -13.93178 -13.50449 -13.29024 -12.83068 -12.78065 -12.41226 -12.27607 -12.19747 -11.92238 -11.79740 -11.72166 -11.19401 -10.89045 -10.81095 -10.63038 -10.55242 -10.34898 -9.79685 -9.65638 -9.47157 -9.18256 -8.71301 -8.22641 -6.22270 -4.46839 2.56741 3.17877 3.20767 3.23817 3.25386 3.51241 3.66939 4.06508 4.22152 4.62706 4.73647 4.83064 4.94738 4.97077 5.09802 5.40668 5.66889 5.74124 5.92470 5.94808 6.24634 6.29049 6.95004 6.96839 7.19995 7.47631 7.48103 7.63898 8.33723 8.47651 8.50274 8.92074 9.20797 10.69196 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.025734 B = 0.006803 C = 0.006448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.807130 B = 4114.701658 C = 4341.636313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.064 3.936 3 Si 0.915 3.085 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.553 4.553 8 H 0.076 0.924 9 C 0.246 3.754 10 H 0.083 0.917 11 N -0.707 5.707 12 C 0.529 3.471 13 O -0.518 6.518 14 C -0.157 4.157 15 H 0.135 0.865 16 C -0.116 4.116 17 C -0.179 4.179 18 H 0.129 0.871 19 C 0.535 3.465 20 N -0.851 5.851 21 O -0.515 6.515 22 C 0.416 3.584 23 F -0.211 7.211 24 F -0.208 7.208 25 F -0.140 7.140 26 H 0.269 0.731 27 H 0.396 0.604 28 H 0.110 0.890 29 H 0.119 0.881 30 H 0.398 0.602 31 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.928 -9.541 -2.986 14.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.145 4.145 3 Si 0.741 3.259 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.590 4.590 8 H 0.094 0.906 9 C 0.140 3.860 10 H 0.101 0.899 11 N -0.357 5.357 12 C 0.313 3.687 13 O -0.393 6.393 14 C -0.179 4.179 15 H 0.153 0.847 16 C -0.154 4.154 17 C -0.201 4.201 18 H 0.147 0.853 19 C 0.319 3.681 20 N -0.414 5.414 21 O -0.389 6.389 22 C 0.360 3.640 23 F -0.193 7.193 24 F -0.190 7.190 25 F -0.121 7.121 26 H 0.079 0.921 27 H 0.230 0.770 28 H 0.128 0.872 29 H 0.137 0.863 30 H 0.226 0.774 31 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 8.102 -9.655 -2.424 12.835 hybrid contribution 1.142 1.157 -0.933 1.874 sum 9.244 -8.498 -3.357 12.998 Atomic orbital electron populations 1.70406 1.05858 1.27438 1.43452 1.25093 0.95147 1.00097 0.94117 0.86280 0.79330 0.81414 0.78840 1.19875 1.20865 1.19804 1.20820 0.93646 0.88150 1.56397 0.90593 1.19698 0.88746 0.85733 0.91806 0.89934 1.45965 1.17039 1.10450 1.62198 1.19494 0.87516 0.83134 0.78572 1.90718 1.20587 1.82624 1.45369 1.22362 1.02243 0.93148 1.00122 0.84682 1.22990 1.03053 0.93665 0.95652 1.22307 1.01771 1.06756 0.89258 0.85331 1.19573 0.88355 0.76938 0.83261 1.43683 1.11645 1.69449 1.16661 1.90839 1.14718 1.51935 1.81358 1.23029 0.80942 0.73090 0.86949 1.92965 1.74479 1.96225 1.55663 1.93143 1.81219 1.47714 1.96906 1.93390 1.68455 1.54036 1.96202 0.92072 0.77013 0.87197 0.86299 0.77389 0.76665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.35 9.50 55.43 0.53 -22.83 16 2 C 0.06 1.69 5.20 -17.82 -0.09 1.60 16 3 Si 0.91 20.09 29.54 -169.99 -5.02 15.07 16 4 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 5 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 6 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 7 C -0.55 -14.14 8.46 -34.44 -0.29 -14.44 16 8 H 0.08 1.81 7.74 -52.49 -0.41 1.40 16 9 C 0.25 6.23 2.21 -69.09 -0.15 6.07 16 10 H 0.08 2.37 7.58 -51.93 -0.39 1.97 16 11 N -0.71 -14.52 4.98 -54.94 -0.27 -14.79 16 12 C 0.53 10.65 5.88 -10.98 -0.06 10.58 16 13 O -0.52 -12.83 15.14 5.56 0.08 -12.75 16 14 C -0.16 -2.18 6.18 -91.77 -0.57 -2.75 16 15 H 0.14 1.39 8.14 -51.93 -0.42 0.96 16 16 C -0.12 -1.49 9.56 -26.73 -0.26 -1.75 16 17 C -0.18 -2.15 6.19 -91.77 -0.57 -2.72 16 18 H 0.13 0.98 8.14 -51.93 -0.42 0.56 16 19 C 0.54 8.36 6.99 -10.99 -0.08 8.28 16 20 N -0.85 -9.97 8.87 31.22 0.28 -9.69 16 21 O -0.51 -10.84 16.85 5.56 0.09 -10.75 16 22 C 0.42 11.04 2.81 37.16 0.10 11.15 16 23 F -0.21 -5.28 16.94 2.25 0.04 -5.24 16 24 F -0.21 -5.71 15.68 2.25 0.04 -5.67 16 25 F -0.14 -4.00 12.91 2.25 0.03 -3.97 16 26 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 27 H 0.40 6.90 8.54 -40.82 -0.35 6.55 16 28 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.12 1.96 7.42 -51.93 -0.39 1.57 16 30 H 0.40 3.11 8.83 -40.82 -0.36 2.75 16 31 H 0.40 4.81 8.93 -40.82 -0.36 4.44 16 LS Contribution 286.98 15.07 4.32 4.32 Total: -1.00 -34.99 286.98 -4.51 -39.50 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -2.66 Total: 10.76 kcal Atomic # 6 Polarization: 18.00 SS G_CDS: -1.96 Total: 16.03 kcal Atomic # 7 Polarization: -47.83 SS G_CDS: 0.53 Total: -47.30 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: 0.18 Total: -23.50 kcal Atomic # 9 Polarization: -14.98 SS G_CDS: 0.10 Total: -14.88 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -34.99 -4.51 -39.50 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928799480.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.913 kcal (2) G-P(sol) polarization free energy of solvation -34.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds