Wall clock time and date at job start Tue Mar 31 2020 01:51:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 119.99911 * 2 1 4 4 H 1.48496 * 109.47548 * 264.64150 * 3 2 1 5 5 H 1.48499 * 109.47027 * 24.64247 * 3 2 1 6 6 H 1.48501 * 109.46769 * 144.63909 * 3 2 1 7 7 C 1.37882 * 119.99997 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00012 * 5.07178 * 7 2 1 9 9 C 1.50701 * 119.99622 * 185.07524 * 7 2 1 10 10 H 1.08993 * 109.47631 * 325.36830 * 9 7 2 11 11 N 1.46497 * 109.47095 * 85.37027 * 9 7 2 12 12 C 1.34771 * 120.00280 * 204.99652 * 11 9 7 13 13 O 1.21285 * 119.99833 * 0.02562 * 12 11 9 14 14 C 1.50700 * 120.00463 * 179.97438 * 12 11 9 15 15 H 1.09006 * 110.21353 * 40.70834 * 14 12 11 16 16 C 1.54473 * 110.24880 * 278.77385 * 14 12 11 17 17 C 1.54628 * 101.76569 * 215.58146 * 16 14 12 18 18 C 1.51281 * 104.19501 * 24.79670 * 17 16 14 19 19 O 1.21284 * 124.94190 * 163.77343 * 18 17 16 20 20 N 1.34563 * 110.14298 * 343.67549 * 18 17 16 21 21 C 1.53005 * 109.46544 * 205.36500 * 9 7 2 22 22 F 1.39892 * 109.46906 * 64.10168 * 21 9 7 23 23 F 1.39906 * 109.46641 * 184.09571 * 21 9 7 24 24 F 1.39896 * 109.47330 * 304.09524 * 21 9 7 25 25 H 0.97003 * 120.00176 * 359.97438 * 1 2 3 26 26 H 0.97004 * 120.00125 * 24.99472 * 11 9 7 27 27 H 1.09004 * 110.97133 * 333.70107 * 16 14 12 28 28 H 1.08995 * 110.97011 * 97.46199 * 16 14 12 29 29 H 1.09000 * 110.48770 * 143.47345 * 17 16 14 30 30 H 1.08998 * 110.48593 * 265.98796 * 17 16 14 31 31 H 0.96999 * 124.44135 * 179.64179 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6098 1.9812 -1.3939 5 1 1.3945 2.6827 0.5838 6 1 3.4854 1.4755 0.8103 7 6 2.0045 -1.1941 -0.0005 8 1 1.4677 -2.1275 -0.0836 9 6 3.5071 -1.1966 0.1149 10 1 3.9127 -0.3265 -0.4011 11 7 3.8883 -1.1476 1.5286 12 6 5.0872 -0.6465 1.8863 13 8 5.8504 -0.2358 1.0378 14 6 5.4792 -0.5955 3.3405 15 1 5.1665 -1.5087 3.8471 16 6 4.8458 0.6376 4.0220 17 6 5.9533 1.0504 5.0191 18 6 7.2246 0.5024 4.4091 19 8 8.3468 0.8391 4.7228 20 7 6.9299 -0.4146 3.4695 21 6 4.0651 -2.4721 -0.5198 22 9 3.7814 -2.4738 -1.8897 23 9 5.4505 -2.5195 -0.3304 24 9 3.4738 -3.5889 0.0804 25 1 -0.4850 0.8401 0.0004 26 1 3.2778 -1.4757 2.2072 27 1 4.6580 1.4302 3.2976 28 1 3.9300 0.3659 4.5468 29 1 6.0069 2.1359 5.1017 30 1 5.7729 0.6027 5.9963 31 1 7.5900 -0.8936 2.9443 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928801471.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:35 Heat of formation + Delta-G solvation = -233.817008 kcal Electronic energy + Delta-G solvation = -22989.383429 eV Core-core repulsion = 18855.365702 eV Total energy + Delta-G solvation = -4134.017727 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.082 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.19399 -46.71234 -46.67851 -40.63868 -38.78544 -36.17650 -34.92392 -32.70594 -31.37164 -29.91766 -27.58620 -25.09760 -22.92121 -21.43058 -20.56951 -20.15693 -18.50591 -17.67445 -17.47550 -17.19302 -16.83114 -16.53982 -15.74680 -15.38565 -14.76368 -14.41507 -13.85632 -13.65854 -13.64318 -13.56863 -13.23215 -13.15975 -13.08189 -12.88973 -12.86948 -12.76658 -12.66160 -11.97800 -11.83410 -11.34332 -11.17605 -10.81694 -10.30926 -9.97322 -9.95581 -9.79978 -9.15714 -8.96733 -8.61770 -6.63970 -4.79545 2.52935 2.79207 2.99348 3.12013 3.17697 3.19044 3.59073 3.79829 3.99060 4.24972 4.34802 4.65034 4.79638 4.86951 4.92982 5.04546 5.12111 5.26478 5.39506 5.51985 5.67852 5.83543 6.17550 6.67697 6.76786 6.92949 6.99564 7.71883 8.08129 8.21709 8.41634 8.60323 8.90880 10.44115 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.017842 B = 0.007320 C = 0.005826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.958435 B = 3824.255325 C = 4804.482373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.100 3.900 3 Si 0.870 3.130 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.255 1.255 7 C -0.539 4.539 8 H 0.095 0.905 9 C 0.205 3.795 10 H 0.088 0.912 11 N -0.707 5.707 12 C 0.493 3.507 13 O -0.533 6.533 14 C 0.109 3.891 15 H 0.106 0.894 16 C -0.123 4.123 17 C -0.154 4.154 18 C 0.523 3.477 19 O -0.539 6.539 20 N -0.706 5.706 21 C 0.441 3.559 22 F -0.183 7.183 23 F -0.196 7.196 24 F -0.189 7.189 25 H 0.276 0.724 26 H 0.402 0.598 27 H 0.089 0.911 28 H 0.103 0.897 29 H 0.104 0.896 30 H 0.108 0.892 31 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.682 -0.893 7.794 9.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.110 4.110 3 Si 0.695 3.305 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.178 1.178 7 C -0.577 4.577 8 H 0.113 0.887 9 C 0.102 3.898 10 H 0.106 0.894 11 N -0.359 5.359 12 C 0.276 3.724 13 O -0.410 6.410 14 C 0.000 4.000 15 H 0.123 0.877 16 C -0.161 4.161 17 C -0.194 4.194 18 C 0.309 3.691 19 O -0.416 6.416 20 N -0.361 5.361 21 C 0.386 3.614 22 F -0.165 7.165 23 F -0.178 7.178 24 F -0.170 7.170 25 H 0.087 0.913 26 H 0.239 0.761 27 H 0.107 0.893 28 H 0.121 0.879 29 H 0.122 0.878 30 H 0.126 0.874 31 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 5.556 -0.281 7.389 9.249 hybrid contribution 0.288 0.187 -0.180 0.388 sum 5.844 -0.095 7.209 9.280 Atomic orbital electron populations 1.69855 1.06433 1.28500 1.44107 1.24975 0.94779 0.99276 0.91987 0.86924 0.80643 0.82747 0.80208 1.19236 1.20533 1.17844 1.20762 0.86195 0.96549 1.54182 0.88656 1.20023 0.98155 0.90492 0.81160 0.89410 1.47564 1.16595 1.61673 1.10117 1.20836 0.82852 0.78479 0.90209 1.90706 1.51292 1.47063 1.51911 1.21711 0.82043 1.01092 0.95169 0.87681 1.22629 0.98593 0.96619 0.98287 1.22357 0.92999 1.03833 1.00207 1.20875 0.90555 0.78410 0.79271 1.90744 1.24850 1.61554 1.64489 1.45984 1.07198 1.42884 1.40076 1.21524 0.74762 0.88144 0.76990 1.93108 1.93397 1.96873 1.33107 1.93138 1.32632 1.97005 1.94998 1.93085 1.83946 1.56468 1.83531 0.91346 0.76131 0.89280 0.87856 0.87755 0.87402 0.74485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.23 13.96 55.43 0.77 -21.46 16 2 C 0.10 2.45 5.47 -17.82 -0.10 2.35 16 3 Si 0.87 18.78 26.92 -169.99 -4.58 14.20 16 4 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 6 H -0.25 -5.37 6.84 56.52 0.39 -4.99 16 7 C -0.54 -12.83 8.68 -34.44 -0.30 -13.13 16 8 H 0.10 2.48 7.69 -52.49 -0.40 2.08 16 9 C 0.20 4.35 1.45 -69.08 -0.10 4.25 16 10 H 0.09 2.01 5.33 -51.93 -0.28 1.73 16 11 N -0.71 -12.47 4.94 -54.93 -0.27 -12.74 16 12 C 0.49 8.39 6.32 -10.99 -0.07 8.32 16 13 O -0.53 -11.12 15.17 5.55 0.08 -11.03 16 14 C 0.11 1.35 3.92 -68.16 -0.27 1.09 16 15 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 16 C -0.12 -1.28 6.67 -25.10 -0.17 -1.45 16 17 C -0.15 -1.53 6.86 -26.74 -0.18 -1.71 16 18 C 0.52 7.36 8.43 -10.80 -0.09 7.27 16 19 O -0.54 -9.61 18.03 5.55 0.10 -9.51 16 20 N -0.71 -9.54 5.48 -53.84 -0.29 -9.83 16 21 C 0.44 9.21 2.83 37.16 0.11 9.32 16 22 F -0.18 -3.95 17.12 2.25 0.04 -3.91 16 23 F -0.20 -4.04 15.57 2.25 0.04 -4.00 16 24 F -0.19 -3.81 16.65 2.25 0.04 -3.77 16 25 H 0.28 6.70 8.31 -40.82 -0.34 6.36 16 26 H 0.40 6.10 8.59 -40.82 -0.35 5.75 16 27 H 0.09 1.10 7.91 -51.93 -0.41 0.69 16 28 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.42 5.69 8.95 -40.82 -0.37 5.32 16 LS Contribution 284.86 15.07 4.29 4.29 Total: -1.00 -30.16 284.86 -3.60 -33.76 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -2.65 Total: 7.71 kcal Atomic # 6 Polarization: 17.47 SS G_CDS: -1.17 Total: 16.30 kcal Atomic # 7 Polarization: -44.24 SS G_CDS: 0.21 Total: -44.04 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: 0.18 Total: -20.54 kcal Atomic # 9 Polarization: -11.80 SS G_CDS: 0.11 Total: -11.69 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -4.58 Total: 14.20 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -30.16 -3.60 -33.76 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928801471.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -200.058 kcal (2) G-P(sol) polarization free energy of solvation -30.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -230.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -233.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds