Wall clock time and date at job start Tue Mar 31 2020 01:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 119.99911 * 2 1 4 4 H 1.48496 * 109.47548 * 264.64150 * 3 2 1 5 5 H 1.48499 * 109.47027 * 24.64247 * 3 2 1 6 6 H 1.48501 * 109.46769 * 144.63909 * 3 2 1 7 7 C 1.37882 * 119.99997 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00012 * 5.07178 * 7 2 1 9 9 C 1.50701 * 119.99622 * 185.07524 * 7 2 1 10 10 H 1.08993 * 109.47631 * 325.36830 * 9 7 2 11 11 N 1.46497 * 109.47095 * 85.37027 * 9 7 2 12 12 C 1.34771 * 120.00280 * 204.99652 * 11 9 7 13 13 O 1.21285 * 119.99833 * 0.02562 * 12 11 9 14 14 C 1.50700 * 120.00463 * 179.97438 * 12 11 9 15 15 H 1.09006 * 110.21353 * 40.70834 * 14 12 11 16 16 C 1.54473 * 110.24880 * 278.77385 * 14 12 11 17 17 C 1.54628 * 101.76569 * 215.58146 * 16 14 12 18 18 C 1.51281 * 104.19501 * 24.79670 * 17 16 14 19 19 O 1.21284 * 124.94190 * 163.77343 * 18 17 16 20 20 N 1.34563 * 110.14298 * 343.67549 * 18 17 16 21 21 C 1.53005 * 109.46544 * 205.36500 * 9 7 2 22 22 F 1.39892 * 109.46906 * 64.10168 * 21 9 7 23 23 F 1.39906 * 109.46641 * 184.09571 * 21 9 7 24 24 F 1.39896 * 109.47330 * 304.09524 * 21 9 7 25 25 H 0.97003 * 120.00176 * 359.97438 * 1 2 3 26 26 H 0.97004 * 120.00125 * 24.99472 * 11 9 7 27 27 H 1.09004 * 110.97133 * 333.70107 * 16 14 12 28 28 H 1.08995 * 110.97011 * 97.46199 * 16 14 12 29 29 H 1.09000 * 110.48770 * 143.47345 * 17 16 14 30 30 H 1.08998 * 110.48593 * 265.98796 * 17 16 14 31 31 H 0.96999 * 124.44135 * 179.64179 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6098 1.9812 -1.3939 5 1 1.3945 2.6827 0.5838 6 1 3.4854 1.4755 0.8103 7 6 2.0045 -1.1941 -0.0005 8 1 1.4677 -2.1275 -0.0836 9 6 3.5071 -1.1966 0.1149 10 1 3.9127 -0.3265 -0.4011 11 7 3.8883 -1.1476 1.5286 12 6 5.0872 -0.6465 1.8863 13 8 5.8504 -0.2358 1.0378 14 6 5.4792 -0.5955 3.3405 15 1 5.1665 -1.5087 3.8471 16 6 4.8458 0.6376 4.0220 17 6 5.9533 1.0504 5.0191 18 6 7.2246 0.5024 4.4091 19 8 8.3468 0.8391 4.7228 20 7 6.9299 -0.4146 3.4695 21 6 4.0651 -2.4721 -0.5198 22 9 3.7814 -2.4738 -1.8897 23 9 5.4505 -2.5195 -0.3304 24 9 3.4738 -3.5889 0.0804 25 1 -0.4850 0.8401 0.0004 26 1 3.2778 -1.4757 2.2072 27 1 4.6580 1.4302 3.2976 28 1 3.9300 0.3659 4.5468 29 1 6.0069 2.1359 5.1017 30 1 5.7729 0.6027 5.9963 31 1 7.5900 -0.8936 2.9443 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928801471.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:34 Heat of formation + Delta-G solvation = -257.692530 kcal Electronic energy + Delta-G solvation = -22990.418750 eV Core-core repulsion = 18855.365702 eV Total energy + Delta-G solvation = -4135.053047 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.082 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -50.89474 -48.41328 -48.37645 -41.77087 -40.13727 -37.37318 -36.53679 -34.48702 -32.30686 -31.44291 -28.78929 -26.90428 -24.06886 -22.91749 -21.67390 -21.44858 -20.14462 -19.35504 -18.89710 -18.58406 -18.38256 -18.04006 -17.09943 -16.75002 -16.12406 -15.82680 -15.41823 -15.27724 -15.07606 -14.87087 -14.78719 -14.70492 -14.58472 -14.51988 -14.44428 -14.12034 -13.67450 -13.55328 -13.03661 -12.89518 -12.55329 -12.12474 -11.96968 -11.82651 -11.23156 -11.03254 -10.93929 -10.19308 -10.15676 -8.52070 -6.70688 1.27000 1.36238 1.41610 1.46459 1.49007 1.91594 2.09580 2.19246 2.43684 2.95970 3.18859 3.31745 3.34499 3.39330 3.57728 3.83478 4.01817 4.11387 4.42351 4.52845 4.81489 4.95032 4.98125 5.04401 5.41351 5.65170 5.89496 5.93830 6.47282 6.65591 7.02177 7.12367 7.24505 8.59999 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.017842 B = 0.007320 C = 0.005826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.958435 B = 3824.255325 C = 4804.482373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.067 3.933 3 Si 0.921 3.079 4 H -0.279 1.279 5 H -0.270 1.270 6 H -0.248 1.248 7 C -0.539 4.539 8 H 0.067 0.933 9 C 0.213 3.787 10 H 0.074 0.926 11 N -0.701 5.701 12 C 0.491 3.509 13 O -0.573 6.573 14 C 0.116 3.884 15 H 0.148 0.852 16 C -0.119 4.119 17 C -0.140 4.140 18 C 0.513 3.487 19 O -0.585 6.585 20 N -0.710 5.710 21 C 0.442 3.558 22 F -0.189 7.189 23 F -0.193 7.193 24 F -0.184 7.184 25 H 0.280 0.720 26 H 0.418 0.582 27 H 0.068 0.932 28 H 0.143 0.857 29 H 0.113 0.887 30 H 0.143 0.857 31 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.723 -0.605 9.706 10.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.745 3.255 4 H -0.205 1.205 5 H -0.195 1.195 6 H -0.171 1.171 7 C -0.576 4.576 8 H 0.085 0.915 9 C 0.108 3.892 10 H 0.092 0.908 11 N -0.355 5.355 12 C 0.277 3.723 13 O -0.452 6.452 14 C 0.007 3.993 15 H 0.165 0.835 16 C -0.157 4.157 17 C -0.180 4.180 18 C 0.301 3.699 19 O -0.466 6.466 20 N -0.363 5.363 21 C 0.386 3.614 22 F -0.171 7.171 23 F -0.174 7.174 24 F -0.165 7.165 25 H 0.090 0.910 26 H 0.257 0.743 27 H 0.087 0.913 28 H 0.161 0.839 29 H 0.132 0.868 30 H 0.161 0.839 31 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 5.570 -0.012 9.329 10.865 hybrid contribution 0.325 0.003 -0.825 0.887 sum 5.895 -0.009 8.504 10.348 Atomic orbital electron populations 1.69926 1.07704 1.29386 1.46111 1.25477 0.95132 1.01634 0.91747 0.86130 0.79871 0.79969 0.79539 1.20469 1.19535 1.17131 1.20666 0.87290 0.95405 1.54267 0.91502 1.19672 0.96475 0.90150 0.82902 0.90834 1.47053 1.17562 1.62031 1.08817 1.21601 0.81669 0.76858 0.92162 1.90698 1.52273 1.48541 1.53709 1.21902 0.81453 1.04192 0.91725 0.83470 1.22754 1.00187 0.94840 0.97944 1.22403 0.89885 1.04465 1.01198 1.21644 0.91300 0.77863 0.79055 1.90718 1.27016 1.62893 1.65984 1.46158 1.07764 1.42629 1.39782 1.21485 0.74900 0.88254 0.76748 1.93096 1.93455 1.96910 1.33629 1.93145 1.32344 1.96999 1.94954 1.93093 1.83888 1.56166 1.83389 0.91010 0.74339 0.91294 0.83935 0.86845 0.83889 0.75110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -46.58 13.96 21.45 0.30 -46.28 16 2 C 0.07 3.24 5.47 84.66 0.46 3.70 16 3 Si 0.92 38.17 26.92 68.60 1.85 40.01 16 4 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 5 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 6 H -0.25 -9.87 6.84 99.48 0.68 -9.19 16 7 C -0.54 -25.50 8.68 25.60 0.22 -25.28 16 8 H 0.07 3.53 7.69 -2.91 -0.02 3.50 16 9 C 0.21 8.86 1.45 44.25 0.06 8.92 16 10 H 0.07 3.31 5.33 -2.39 -0.01 3.30 16 11 N -0.70 -23.24 4.94 -446.10 -2.21 -25.45 16 12 C 0.49 15.60 6.32 87.66 0.55 16.15 16 13 O -0.57 -23.21 15.17 -3.05 -0.05 -23.26 16 14 C 0.12 2.45 3.92 44.69 0.18 2.62 16 15 H 0.15 1.98 8.14 -2.38 -0.02 1.96 16 16 C -0.12 -1.96 6.67 31.65 0.21 -1.75 16 17 C -0.14 -2.20 6.86 30.59 0.21 -1.99 16 18 C 0.51 13.36 8.43 87.88 0.74 14.10 16 19 O -0.59 -20.41 18.03 -3.04 -0.05 -20.47 16 20 N -0.71 -17.65 5.48 -442.77 -2.42 -20.08 16 21 C 0.44 18.11 2.83 71.98 0.20 18.31 16 22 F -0.19 -8.11 17.12 44.97 0.77 -7.34 16 23 F -0.19 -7.75 15.57 44.97 0.70 -7.05 16 24 F -0.18 -7.24 16.65 44.97 0.75 -6.49 16 25 H 0.28 13.55 8.31 -92.71 -0.77 12.78 16 26 H 0.42 11.47 8.59 -92.71 -0.80 10.67 16 27 H 0.07 1.47 7.91 -2.38 -0.02 1.45 16 28 H 0.14 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.11 1.66 8.14 -2.39 -0.02 1.65 16 30 H 0.14 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.41 10.79 8.95 -92.71 -0.83 9.96 16 Total: -1.00 -66.35 284.86 2.04 -64.31 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: -0.43 Total: 17.31 kcal Atomic # 6 Polarization: 31.94 SS G_CDS: 2.84 Total: 34.78 kcal Atomic # 7 Polarization: -87.48 SS G_CDS: -4.33 Total: -91.81 kcal Atomic # 8 Polarization: -43.62 SS G_CDS: -0.10 Total: -43.72 kcal Atomic # 9 Polarization: -23.10 SS G_CDS: 2.22 Total: -20.88 kcal Atomic # 14 Polarization: 38.17 SS G_CDS: 1.85 Total: 40.01 kcal Total: -66.35 2.04 -64.31 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928801471.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -193.383 kcal (2) G-P(sol) polarization free energy of solvation -66.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -259.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -257.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds