Wall clock time and date at job start Tue Mar 31 2020 01:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86806 * 119.99883 * 2 1 4 4 H 1.48500 * 109.47072 * 265.16363 * 3 2 1 5 5 H 1.48504 * 109.47014 * 25.16086 * 3 2 1 6 6 H 1.48495 * 109.47413 * 145.16211 * 3 2 1 7 7 C 1.37871 * 120.00358 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00173 * 354.03457 * 7 2 1 9 9 C 1.50709 * 120.00318 * 174.04093 * 7 2 1 10 10 H 1.09004 * 109.46601 * 56.79773 * 9 7 2 11 11 N 1.46490 * 109.47010 * 296.80123 * 9 7 2 12 12 C 1.34777 * 120.00015 * 154.99759 * 11 9 7 13 13 O 1.21280 * 119.99971 * 359.72779 * 12 11 9 14 14 C 1.50706 * 119.99856 * 179.71884 * 12 11 9 15 15 H 1.09000 * 110.21421 * 39.53390 * 14 12 11 16 16 C 1.54472 * 110.24806 * 277.50282 * 14 12 11 17 17 C 1.54624 * 101.76731 * 266.41771 * 16 14 12 18 18 C 1.51286 * 104.19344 * 335.20160 * 17 16 14 19 19 O 1.21282 * 124.93913 * 196.23184 * 18 17 16 20 20 N 1.34420 * 110.11454 * 16.25434 * 18 17 16 21 21 C 1.52994 * 109.47088 * 176.79592 * 9 7 2 22 22 F 1.39907 * 109.47005 * 185.24834 * 21 9 7 23 23 F 1.39899 * 109.47805 * 305.24999 * 21 9 7 24 24 F 1.39897 * 109.47214 * 65.25158 * 21 9 7 25 25 H 0.96994 * 120.00324 * 359.97438 * 1 2 3 26 26 H 0.97007 * 119.99970 * 334.72298 * 11 9 7 27 27 H 1.08997 * 110.97202 * 24.53759 * 16 14 12 28 28 H 1.09002 * 110.96773 * 148.29780 * 16 14 12 29 29 H 1.09000 * 110.48517 * 216.52504 * 17 16 14 30 30 H 1.09005 * 110.60252 * 93.93659 * 17 16 14 31 31 H 0.97003 * 124.34348 * 180.42870 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.5988 1.9875 -1.3951 5 1 1.3991 2.6801 0.5953 6 1 3.4917 1.4720 0.7998 7 6 2.0045 -1.1940 -0.0005 8 1 1.4690 -2.1268 0.0963 9 6 3.5055 -1.1974 -0.1360 10 1 3.9433 -0.5919 0.6577 11 7 3.8795 -0.6401 -1.4381 12 6 5.0925 -0.0773 -1.6070 13 8 5.8725 -0.0280 -0.6796 14 6 5.4796 0.4904 -2.9483 15 1 4.6296 1.0015 -3.4005 16 6 5.9865 -0.6339 -3.8785 17 6 7.5128 -0.5787 -3.6370 18 6 7.7644 0.8399 -3.1755 19 8 8.8505 1.3788 -3.1471 20 7 6.6090 1.4159 -2.8011 21 6 4.0240 -2.6327 -0.0276 22 9 5.4231 -2.6248 -0.0332 23 9 3.5658 -3.2055 1.1637 24 9 3.5576 -3.3804 -1.1141 25 1 -0.4850 0.8400 0.0004 26 1 3.2556 -0.6796 -2.1799 27 1 5.5792 -1.6000 -3.5807 28 1 5.7482 -0.4159 -4.9196 29 1 8.0529 -0.7804 -4.5620 30 1 7.8046 -1.2890 -2.8633 31 1 6.5317 2.3265 -2.4758 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928801472.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:51:37 Heat of formation + Delta-G solvation = -252.885853 kcal Electronic energy + Delta-G solvation = -23277.535668 eV Core-core repulsion = 19142.691054 eV Total energy + Delta-G solvation = -4134.844614 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.082 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.88569 -48.40471 -48.35690 -41.89521 -40.10687 -37.40251 -36.57530 -34.44580 -32.35603 -31.41396 -28.75050 -26.94208 -24.24057 -22.96308 -21.72271 -21.40114 -20.13106 -19.37382 -18.86967 -18.53449 -18.39212 -18.28676 -17.05834 -16.62935 -16.10962 -15.73291 -15.51127 -15.27349 -15.18581 -14.84267 -14.78287 -14.71377 -14.57003 -14.51069 -14.40787 -14.30204 -13.71442 -13.57620 -12.97200 -12.59979 -12.41655 -12.26187 -12.10421 -11.88965 -11.41595 -11.04559 -10.98074 -10.21712 -10.15870 -8.51536 -6.68979 1.22192 1.30812 1.39888 1.45167 1.49162 1.90032 2.12097 2.19067 2.40951 2.95793 3.14347 3.31173 3.36603 3.44866 3.48403 3.80793 3.93075 4.21701 4.43195 4.54098 4.77952 4.94581 4.95492 5.04005 5.34354 5.64678 5.88922 5.90175 6.44551 6.60428 7.00977 7.11278 7.20326 8.60922 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.018273 B = 0.007924 C = 0.006277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.962279 B = 3532.576741 C = 4459.690592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.063 3.937 3 Si 0.926 3.074 4 H -0.233 1.233 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.541 4.541 8 H 0.064 0.936 9 C 0.212 3.788 10 H 0.073 0.927 11 N -0.706 5.706 12 C 0.481 3.519 13 O -0.566 6.566 14 C 0.111 3.889 15 H 0.151 0.849 16 C -0.107 4.107 17 C -0.153 4.153 18 C 0.519 3.481 19 O -0.584 6.584 20 N -0.706 5.706 21 C 0.446 3.554 22 F -0.191 7.191 23 F -0.190 7.190 24 F -0.181 7.181 25 H 0.279 0.721 26 H 0.418 0.582 27 H 0.102 0.898 28 H 0.138 0.862 29 H 0.132 0.868 30 H 0.097 0.903 31 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.446 -0.242 -10.465 12.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.143 4.143 3 Si 0.750 3.250 4 H -0.156 1.156 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.579 4.579 8 H 0.082 0.918 9 C 0.107 3.893 10 H 0.090 0.910 11 N -0.361 5.361 12 C 0.267 3.733 13 O -0.444 6.444 14 C 0.001 3.999 15 H 0.169 0.831 16 C -0.145 4.145 17 C -0.193 4.193 18 C 0.308 3.692 19 O -0.465 6.465 20 N -0.359 5.359 21 C 0.390 3.610 22 F -0.173 7.173 23 F -0.171 7.171 24 F -0.162 7.162 25 H 0.089 0.911 26 H 0.257 0.743 27 H 0.121 0.879 28 H 0.157 0.843 29 H 0.150 0.850 30 H 0.115 0.885 31 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 7.397 0.029 -9.852 12.319 hybrid contribution -0.242 0.788 0.695 1.078 sum 7.154 0.818 -9.157 11.649 Atomic orbital electron populations 1.69942 1.07779 1.29324 1.46611 1.25439 0.95115 1.01713 0.92007 0.86052 0.78398 0.79411 0.81123 1.15588 1.21565 1.20328 1.20709 0.87646 0.95445 1.54077 0.91809 1.19815 0.96909 0.85667 0.86949 0.90977 1.47092 1.16356 1.58421 1.14243 1.22032 0.81511 0.78018 0.91739 1.90716 1.51452 1.58073 1.44121 1.21929 0.92317 0.93583 0.92027 0.83144 1.22719 0.92912 0.97677 1.01205 1.22403 0.98957 0.92824 1.05124 1.21461 0.82831 0.89758 0.75152 1.90704 1.27035 1.70915 1.57803 1.46001 1.07975 1.15852 1.66043 1.21301 0.74600 0.91860 0.73221 1.93160 1.30748 1.97121 1.96227 1.93103 1.88947 1.86846 1.48224 1.93097 1.88500 1.79400 1.55246 0.91098 0.74341 0.87903 0.84350 0.85019 0.88456 0.74712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -47.41 13.96 21.44 0.30 -47.11 16 2 C 0.06 3.08 5.46 84.65 0.46 3.54 16 3 Si 0.93 38.00 26.13 68.60 1.79 39.80 16 4 H -0.23 -8.04 7.11 99.48 0.71 -7.33 16 5 H -0.29 -12.08 7.11 99.48 0.71 -11.38 16 6 H -0.28 -12.25 6.55 99.48 0.65 -11.59 16 7 C -0.54 -26.11 8.64 25.60 0.22 -25.89 16 8 H 0.06 3.46 7.91 -2.91 -0.02 3.44 16 9 C 0.21 8.89 1.41 44.25 0.06 8.95 16 10 H 0.07 3.34 6.29 -2.38 -0.01 3.33 16 11 N -0.71 -23.69 3.20 -446.10 -1.43 -25.12 16 12 C 0.48 15.32 6.38 87.66 0.56 15.88 16 13 O -0.57 -23.02 15.16 -3.03 -0.05 -23.07 16 14 C 0.11 2.33 3.93 44.70 0.18 2.50 16 15 H 0.15 2.13 8.14 -2.39 -0.02 2.11 16 16 C -0.11 -1.58 6.69 31.65 0.21 -1.37 16 17 C -0.15 -2.99 6.85 30.59 0.21 -2.78 16 18 C 0.52 14.53 8.43 87.90 0.74 15.27 16 19 O -0.58 -21.32 18.03 -3.03 -0.05 -21.37 16 20 N -0.71 -17.34 5.47 -442.97 -2.42 -19.76 16 21 C 0.45 18.05 2.79 71.98 0.20 18.25 16 22 F -0.19 -7.63 15.85 44.97 0.71 -6.91 16 23 F -0.19 -8.09 16.83 44.97 0.76 -7.34 16 24 F -0.18 -6.85 16.97 44.97 0.76 -6.09 16 25 H 0.28 13.67 8.31 -92.71 -0.77 12.90 16 26 H 0.42 11.86 8.60 -92.70 -0.80 11.06 16 27 H 0.10 1.52 7.89 -2.39 -0.02 1.50 16 28 H 0.14 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.13 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.10 2.17 8.14 -2.38 -0.02 2.15 16 31 H 0.41 9.67 8.96 -92.71 -0.83 8.84 16 Total: -1.00 -67.56 283.48 2.75 -64.81 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: -0.47 Total: 17.81 kcal Atomic # 6 Polarization: 31.50 SS G_CDS: 2.84 Total: 34.35 kcal Atomic # 7 Polarization: -88.44 SS G_CDS: -3.55 Total: -91.99 kcal Atomic # 8 Polarization: -44.34 SS G_CDS: -0.10 Total: -44.44 kcal Atomic # 9 Polarization: -22.57 SS G_CDS: 2.23 Total: -20.34 kcal Atomic # 14 Polarization: 38.00 SS G_CDS: 1.79 Total: 39.80 kcal Total: -67.56 2.75 -64.81 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928801472.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -188.078 kcal (2) G-P(sol) polarization free energy of solvation -67.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -255.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -252.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds