Wall clock time and date at job start Tue Mar 31 2020 01:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 11 11 N 1.46497 * 109.47115 * 180.02562 * 9 7 2 12 12 C 1.34777 * 120.00015 * 204.99781 * 11 9 7 13 13 O 1.21279 * 120.00228 * 359.97438 * 12 11 9 14 14 C 1.50709 * 119.99692 * 180.02562 * 12 11 9 15 15 H 1.08994 * 110.43492 * 59.30372 * 14 12 11 16 16 C 1.54624 * 110.48152 * 181.84357 * 14 12 11 17 17 C 1.54479 * 101.76626 * 93.88032 * 16 14 12 18 18 N 1.46761 * 105.47257 * 25.41526 * 17 16 14 19 19 C 1.34744 * 111.35072 * 343.01601 * 18 17 16 20 20 O 1.21280 * 125.11989 * 180.39059 * 19 18 17 21 21 C 1.53000 * 109.47174 * 300.00082 * 9 7 2 22 22 F 1.39903 * 109.47440 * 60.00123 * 21 9 7 23 23 F 1.39899 * 109.47255 * 180.02562 * 21 9 7 24 24 F 1.39900 * 109.47102 * 299.99874 * 21 9 7 25 25 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 26 26 H 0.97005 * 119.99880 * 25.00131 * 11 9 7 27 27 H 1.09001 * 110.96840 * 211.99449 * 16 14 12 28 28 H 1.09001 * 110.97501 * 335.76312 * 16 14 12 29 29 H 1.09003 * 110.24754 * 144.41108 * 17 16 14 30 30 H 1.08993 * 110.24646 * 266.41034 * 17 16 14 31 31 H 0.96999 * 124.35068 * 162.98289 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6240 -2.5568 -0.8903 11 7 2.2030 -3.6127 -0.0005 12 6 1.8368 -4.8123 -0.4938 13 8 0.7191 -4.9701 -0.9372 14 6 2.8160 -5.9580 -0.4932 15 1 3.1399 -6.1812 0.5233 16 6 2.1853 -7.2090 -1.1473 17 6 2.6619 -7.0736 -2.6105 18 7 3.8952 -6.2805 -2.5488 19 6 4.0064 -5.6374 -1.3700 20 8 4.9238 -4.9086 -1.0566 21 6 0.3719 -2.5805 1.2490 22 9 -0.5373 -1.5171 1.2496 23 9 -0.3272 -3.7922 1.2493 24 9 1.1766 -2.5067 2.3910 25 1 -0.4850 0.8401 0.0004 26 1 3.0969 -3.4866 0.3545 27 1 2.5711 -8.1224 -0.6945 28 1 1.0976 -7.1746 -1.0866 29 1 2.8668 -8.0573 -3.0331 30 1 1.9098 -6.5558 -3.2057 31 1 4.5475 -6.2264 -3.2646 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928804314.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:56:29 Heat of formation + Delta-G solvation = -209.137366 kcal Electronic energy + Delta-G solvation = -23273.894226 eV Core-core repulsion = 19140.946689 eV Total energy + Delta-G solvation = -4132.947537 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.082 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.36782 -46.02219 -45.62704 -40.71590 -38.41038 -36.31939 -34.66705 -32.61495 -31.48083 -28.85518 -27.34103 -24.57715 -22.81909 -21.59037 -20.85443 -19.64376 -17.87904 -17.45625 -16.85604 -16.79509 -16.59538 -15.89831 -15.40976 -15.04075 -14.79852 -14.27955 -13.94634 -13.61422 -13.19749 -13.08905 -12.94369 -12.69139 -12.50545 -12.41656 -12.28953 -11.98743 -11.83064 -11.55402 -11.38983 -11.12288 -10.87475 -10.79052 -10.39947 -9.94411 -9.66141 -9.39029 -9.13364 -8.72874 -8.31792 -6.23704 -4.46932 2.43641 2.98898 3.20880 3.26918 3.30196 3.34731 3.75531 4.22552 4.32714 4.38861 4.54644 4.80965 4.92944 5.04940 5.22848 5.43883 5.51561 5.80429 5.82994 5.85632 6.01692 6.19789 6.69251 6.87633 6.90219 7.11081 7.46726 7.63480 8.16749 8.25616 8.50049 8.76153 9.20705 10.68046 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.021606 B = 0.006694 C = 0.005691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.653866 B = 4181.567822 C = 4919.273915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.065 3.935 3 Si 0.915 3.085 4 H -0.276 1.276 5 H -0.269 1.269 6 H -0.282 1.282 7 C -0.551 4.551 8 H 0.079 0.921 9 C 0.244 3.756 10 H 0.086 0.914 11 N -0.702 5.702 12 C 0.522 3.478 13 O -0.528 6.528 14 C -0.152 4.152 15 H 0.130 0.870 16 C -0.119 4.119 17 C 0.101 3.899 18 N -0.731 5.731 19 C 0.532 3.468 20 O -0.518 6.518 21 C 0.417 3.583 22 F -0.136 7.136 23 F -0.218 7.218 24 F -0.208 7.208 25 H 0.268 0.732 26 H 0.405 0.595 27 H 0.086 0.914 28 H 0.111 0.889 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.270 -12.235 -2.838 13.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.144 4.144 3 Si 0.742 3.258 4 H -0.201 1.201 5 H -0.194 1.194 6 H -0.208 1.208 7 C -0.588 4.588 8 H 0.097 0.903 9 C 0.139 3.861 10 H 0.103 0.897 11 N -0.351 5.351 12 C 0.306 3.694 13 O -0.405 6.405 14 C -0.177 4.177 15 H 0.148 0.852 16 C -0.157 4.157 17 C -0.023 4.023 18 N -0.387 5.387 19 C 0.317 3.683 20 O -0.393 6.393 21 C 0.361 3.639 22 F -0.117 7.117 23 F -0.200 7.200 24 F -0.190 7.190 25 H 0.079 0.921 26 H 0.240 0.760 27 H 0.105 0.895 28 H 0.129 0.871 29 H 0.099 0.901 30 H 0.096 0.904 31 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 3.648 -11.810 -2.876 12.690 hybrid contribution 0.904 0.855 0.194 1.259 sum 4.552 -10.955 -2.681 12.162 Atomic orbital electron populations 1.70397 1.05847 1.27386 1.43818 1.25082 0.95166 1.00147 0.93974 0.86201 0.79618 0.81491 0.78516 1.20133 1.19402 1.20787 1.20915 0.93961 0.88019 1.55908 0.90288 1.19771 0.88670 0.85876 0.91806 0.89693 1.46103 1.17567 1.10215 1.61172 1.19675 0.87679 0.83469 0.78615 1.90691 1.20787 1.82510 1.46514 1.22182 0.95759 0.96998 1.02738 0.85234 1.22585 1.04020 0.95499 0.93589 1.22120 0.86169 0.95786 0.98250 1.46205 1.24714 1.49986 1.17814 1.20420 0.86208 0.78922 0.82762 1.90788 1.36220 1.36468 1.75844 1.23128 0.80828 0.72814 0.87128 1.93410 1.68341 1.53724 1.96199 1.93061 1.81528 1.48444 1.96986 1.92995 1.74373 1.96178 1.55462 0.92121 0.75966 0.89543 0.87069 0.90124 0.90384 0.75041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.22 9.50 55.43 0.53 -22.69 16 2 C 0.06 1.72 5.20 -17.82 -0.09 1.63 16 3 Si 0.92 20.59 29.54 -169.99 -5.02 15.57 16 4 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 6 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.55 -14.50 8.46 -34.44 -0.29 -14.79 16 8 H 0.08 2.02 7.74 -52.49 -0.41 1.62 16 9 C 0.24 6.16 2.21 -69.09 -0.15 6.00 16 10 H 0.09 2.36 7.58 -51.93 -0.39 1.97 16 11 N -0.70 -14.93 4.94 -54.93 -0.27 -15.20 16 12 C 0.52 10.03 6.71 -10.98 -0.07 9.96 16 13 O -0.53 -11.46 14.03 5.56 0.08 -11.39 16 14 C -0.15 -2.14 3.32 -91.78 -0.30 -2.45 16 15 H 0.13 1.59 8.14 -51.93 -0.42 1.17 16 16 C -0.12 -1.25 6.51 -25.10 -0.16 -1.42 16 17 C 0.10 0.95 7.78 -3.12 -0.02 0.93 16 18 N -0.73 -8.27 6.25 -59.13 -0.37 -8.64 16 19 C 0.53 7.96 7.72 -10.72 -0.08 7.87 16 20 O -0.52 -9.52 17.99 5.56 0.10 -9.42 16 21 C 0.42 10.72 2.81 37.16 0.10 10.83 16 22 F -0.14 -3.76 12.91 2.25 0.03 -3.73 16 23 F -0.22 -5.44 15.67 2.25 0.04 -5.40 16 24 F -0.21 -5.19 16.94 2.25 0.04 -5.15 16 25 H 0.27 7.00 8.31 -40.82 -0.34 6.67 16 26 H 0.41 8.14 8.50 -40.82 -0.35 7.79 16 27 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.11 1.32 6.94 -51.93 -0.36 0.96 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.41 3.83 8.96 -40.82 -0.37 3.46 16 LS Contribution 280.42 15.07 4.23 4.23 Total: -1.00 -31.74 280.42 -4.41 -36.15 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -2.70 Total: 7.11 kcal Atomic # 6 Polarization: 19.65 SS G_CDS: -1.08 Total: 18.57 kcal Atomic # 7 Polarization: -46.42 SS G_CDS: -0.11 Total: -46.54 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: 0.18 Total: -20.81 kcal Atomic # 9 Polarization: -14.39 SS G_CDS: 0.10 Total: -14.28 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -31.74 -4.41 -36.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928804314.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -172.990 kcal (2) G-P(sol) polarization free energy of solvation -31.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds