Wall clock time and date at job start Tue Mar 31 2020 01:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 11 11 N 1.46497 * 109.47115 * 180.02562 * 9 7 2 12 12 C 1.34777 * 120.00015 * 204.99781 * 11 9 7 13 13 O 1.21279 * 120.00228 * 359.97438 * 12 11 9 14 14 C 1.50709 * 119.99692 * 180.02562 * 12 11 9 15 15 H 1.08994 * 110.43492 * 59.30372 * 14 12 11 16 16 C 1.54624 * 110.48152 * 181.84357 * 14 12 11 17 17 C 1.54479 * 101.76626 * 93.88032 * 16 14 12 18 18 N 1.46761 * 105.47257 * 25.41526 * 17 16 14 19 19 C 1.34744 * 111.35072 * 343.01601 * 18 17 16 20 20 O 1.21280 * 125.11989 * 180.39059 * 19 18 17 21 21 C 1.53000 * 109.47174 * 300.00082 * 9 7 2 22 22 F 1.39903 * 109.47440 * 60.00123 * 21 9 7 23 23 F 1.39899 * 109.47255 * 180.02562 * 21 9 7 24 24 F 1.39900 * 109.47102 * 299.99874 * 21 9 7 25 25 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 26 26 H 0.97005 * 119.99880 * 25.00131 * 11 9 7 27 27 H 1.09001 * 110.96840 * 211.99449 * 16 14 12 28 28 H 1.09001 * 110.97501 * 335.76312 * 16 14 12 29 29 H 1.09003 * 110.24754 * 144.41108 * 17 16 14 30 30 H 1.08993 * 110.24646 * 266.41034 * 17 16 14 31 31 H 0.96999 * 124.35068 * 162.98289 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6240 -2.5568 -0.8903 11 7 2.2030 -3.6127 -0.0005 12 6 1.8368 -4.8123 -0.4938 13 8 0.7191 -4.9701 -0.9372 14 6 2.8160 -5.9580 -0.4932 15 1 3.1399 -6.1812 0.5233 16 6 2.1853 -7.2090 -1.1473 17 6 2.6619 -7.0736 -2.6105 18 7 3.8952 -6.2805 -2.5488 19 6 4.0064 -5.6374 -1.3700 20 8 4.9238 -4.9086 -1.0566 21 6 0.3719 -2.5805 1.2490 22 9 -0.5373 -1.5171 1.2496 23 9 -0.3272 -3.7922 1.2493 24 9 1.1766 -2.5067 2.3910 25 1 -0.4850 0.8401 0.0004 26 1 3.0969 -3.4866 0.3545 27 1 2.5711 -8.1224 -0.6945 28 1 1.0976 -7.1746 -1.0866 29 1 2.8668 -8.0573 -3.0331 30 1 1.9098 -6.5558 -3.2057 31 1 4.5475 -6.2264 -3.2646 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928804314.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:56:29 Heat of formation + Delta-G solvation = -233.951942 kcal Electronic energy + Delta-G solvation = -23274.970267 eV Core-core repulsion = 19140.946689 eV Total energy + Delta-G solvation = -4134.023578 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.082 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.44448 -48.07503 -47.75163 -41.92920 -39.89286 -37.48733 -36.46038 -34.52170 -32.62439 -30.48755 -28.56308 -26.62801 -24.30218 -22.77752 -22.37938 -21.14135 -19.49452 -18.90643 -18.74903 -18.51555 -18.43019 -17.69909 -16.94721 -16.56471 -16.34425 -15.68509 -15.26074 -14.99347 -14.86465 -14.69983 -14.51057 -14.47825 -14.41126 -14.31030 -14.05191 -13.89712 -13.62335 -13.10958 -12.81315 -12.69362 -12.40482 -12.26864 -12.21825 -11.61963 -11.21098 -10.90022 -10.73023 -10.14232 -10.09554 -8.25872 -6.56388 1.17755 1.43006 1.44051 1.54791 1.56801 2.15614 2.33960 2.43654 2.49667 2.89142 3.27888 3.42909 3.62620 3.77515 3.82960 4.03853 4.18536 4.27024 4.52993 4.77453 4.84556 5.04576 5.16449 5.33341 5.48413 5.60389 5.74095 5.93109 6.47627 6.57696 7.08616 7.14019 7.21357 8.66746 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.021606 B = 0.006694 C = 0.005691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.653866 B = 4181.567822 C = 4919.273915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.019 3.981 3 Si 0.980 3.020 4 H -0.272 1.272 5 H -0.263 1.263 6 H -0.277 1.277 7 C -0.566 4.566 8 H 0.082 0.918 9 C 0.251 3.749 10 H 0.052 0.948 11 N -0.705 5.705 12 C 0.517 3.483 13 O -0.556 6.556 14 C -0.148 4.148 15 H 0.151 0.849 16 C -0.113 4.113 17 C 0.099 3.901 18 N -0.716 5.716 19 C 0.526 3.474 20 O -0.560 6.560 21 C 0.416 3.584 22 F -0.149 7.149 23 F -0.215 7.215 24 F -0.203 7.203 25 H 0.270 0.730 26 H 0.411 0.589 27 H 0.126 0.874 28 H 0.098 0.902 29 H 0.126 0.874 30 H 0.066 0.934 31 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.445 -13.453 -3.187 14.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.187 4.187 3 Si 0.804 3.196 4 H -0.197 1.197 5 H -0.187 1.187 6 H -0.202 1.202 7 C -0.603 4.603 8 H 0.100 0.900 9 C 0.144 3.856 10 H 0.070 0.930 11 N -0.355 5.355 12 C 0.303 3.697 13 O -0.435 6.435 14 C -0.172 4.172 15 H 0.168 0.832 16 C -0.150 4.150 17 C -0.024 4.024 18 N -0.371 5.371 19 C 0.310 3.690 20 O -0.438 6.438 21 C 0.360 3.640 22 F -0.130 7.130 23 F -0.197 7.197 24 F -0.185 7.185 25 H 0.080 0.920 26 H 0.247 0.753 27 H 0.145 0.855 28 H 0.116 0.884 29 H 0.144 0.856 30 H 0.084 0.916 31 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 4.826 -13.082 -3.258 14.320 hybrid contribution 0.484 1.150 0.268 1.276 sum 5.311 -11.932 -2.990 13.399 Atomic orbital electron populations 1.70506 1.07236 1.28272 1.44445 1.25941 0.95952 1.03473 0.93342 0.85203 0.78499 0.77313 0.78618 1.19719 1.18726 1.20180 1.21182 0.94236 0.88746 1.56100 0.89965 1.19352 0.88829 0.87266 0.90148 0.93027 1.46063 1.17128 1.10252 1.62017 1.20538 0.88271 0.83785 0.77082 1.90673 1.22450 1.83035 1.47306 1.22236 0.94423 0.96026 1.04509 0.83180 1.22699 1.03152 0.95120 0.94066 1.22339 0.84898 0.97498 0.97704 1.46219 1.25255 1.48816 1.16816 1.20563 0.85837 0.78798 0.83783 1.90765 1.37794 1.38399 1.76879 1.23163 0.80737 0.72562 0.87538 1.93380 1.68853 1.54481 1.96301 1.93058 1.81506 1.48121 1.97003 1.92992 1.74181 1.96161 1.55181 0.91969 0.75306 0.85546 0.88393 0.85561 0.91580 0.73773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -48.69 9.50 21.45 0.20 -48.49 16 2 C 0.02 0.99 5.20 84.66 0.44 1.43 16 3 Si 0.98 42.00 29.54 68.60 2.03 44.03 16 4 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 5 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 6 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 7 C -0.57 -30.05 8.46 25.60 0.22 -29.83 16 8 H 0.08 4.22 7.74 -2.91 -0.02 4.19 16 9 C 0.25 12.92 2.21 44.24 0.10 13.02 16 10 H 0.05 3.00 7.58 -2.39 -0.02 2.98 16 11 N -0.70 -30.27 4.94 -446.10 -2.20 -32.47 16 12 C 0.52 19.78 6.71 87.66 0.59 20.36 16 13 O -0.56 -24.34 14.03 -3.02 -0.04 -24.39 16 14 C -0.15 -3.91 3.32 -11.55 -0.04 -3.95 16 15 H 0.15 3.34 8.14 -2.39 -0.02 3.32 16 16 C -0.11 -2.03 6.51 31.65 0.21 -1.82 16 17 C 0.10 1.54 7.78 86.83 0.68 2.22 16 18 N -0.72 -14.44 6.25 -459.38 -2.87 -17.31 16 19 C 0.53 14.91 7.72 87.85 0.68 15.59 16 20 O -0.56 -20.22 17.99 -3.03 -0.05 -20.27 16 21 C 0.42 21.70 2.81 71.98 0.20 21.90 16 22 F -0.15 -8.41 12.91 44.97 0.58 -7.83 16 23 F -0.21 -10.83 15.67 44.97 0.70 -10.12 16 24 F -0.20 -10.15 16.94 44.97 0.76 -9.39 16 25 H 0.27 14.25 8.31 -92.71 -0.77 13.48 16 26 H 0.41 16.60 8.50 -92.70 -0.79 15.81 16 27 H 0.13 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.10 2.12 6.94 -2.39 -0.02 2.10 16 29 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.42 6.82 8.96 -92.71 -0.83 5.99 16 Total: -1.00 -69.51 280.42 1.77 -67.74 By element: Atomic # 1 Polarization: 19.98 SS G_CDS: -0.40 Total: 19.58 kcal Atomic # 6 Polarization: 35.85 SS G_CDS: 3.07 Total: 38.92 kcal Atomic # 7 Polarization: -93.40 SS G_CDS: -4.87 Total: -98.27 kcal Atomic # 8 Polarization: -44.56 SS G_CDS: -0.10 Total: -44.66 kcal Atomic # 9 Polarization: -29.39 SS G_CDS: 2.05 Total: -27.34 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Total: -69.51 1.77 -67.74 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928804314.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -166.210 kcal (2) G-P(sol) polarization free energy of solvation -69.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -235.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -233.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds