Wall clock time and date at job start Tue Mar 31 2020 01:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 120.00357 * 2 1 4 4 H 1.48497 * 109.46950 * 239.99754 * 3 2 1 5 5 H 1.48501 * 109.46663 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47289 * 119.99113 * 3 2 1 7 7 C 1.37885 * 120.00302 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00094 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99531 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.46850 * 59.99721 * 9 7 2 11 11 N 1.46495 * 109.46817 * 179.97438 * 9 7 2 12 12 C 1.34775 * 119.99913 * 204.99852 * 11 9 7 13 13 O 1.21286 * 120.00066 * 0.02562 * 12 11 9 14 14 C 1.50701 * 120.00059 * 179.97438 * 12 11 9 15 15 H 1.09001 * 110.54000 * 298.84229 * 14 12 11 16 16 C 1.54784 * 110.61673 * 176.21507 * 14 12 11 17 17 C 1.54480 * 101.69261 * 266.40316 * 16 14 12 18 18 N 1.46764 * 105.47241 * 334.38904 * 17 16 14 19 19 C 1.34420 * 111.30051 * 17.01779 * 18 17 16 20 20 O 1.21283 * 124.93917 * 179.55324 * 19 18 17 21 21 C 1.52998 * 109.47132 * 299.99638 * 9 7 2 22 22 F 1.39901 * 109.47250 * 300.00452 * 21 9 7 23 23 F 1.39901 * 109.47012 * 60.00163 * 21 9 7 24 24 F 1.39904 * 109.47003 * 180.02562 * 21 9 7 25 25 H 0.97001 * 119.99929 * 0.02562 * 1 2 3 26 26 H 0.97003 * 120.00122 * 25.00231 * 11 9 7 27 27 H 1.08997 * 111.17051 * 148.23263 * 16 14 12 28 28 H 1.09002 * 110.83479 * 24.41979 * 16 14 12 29 29 H 1.09003 * 110.24569 * 215.39240 * 17 16 14 30 30 H 1.09001 * 110.24711 * 93.39200 * 17 16 14 31 31 H 0.96999 * 124.34802 * 197.03621 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6247 -2.5571 -0.8897 11 7 2.2030 -3.6127 0.0005 12 6 1.8369 -4.8123 -0.4927 13 8 0.7194 -4.9699 -0.9370 14 6 2.8164 -5.9576 -0.4933 15 1 3.6910 -5.7125 -1.0958 16 6 2.1440 -7.2495 -1.0174 17 6 1.6748 -7.9133 0.2963 18 7 2.5755 -7.4027 1.3364 19 6 3.2277 -6.3032 0.9209 20 8 4.0258 -5.6763 1.5851 21 6 0.3710 -2.5800 1.2495 22 9 1.1749 -2.5056 2.3920 23 9 -0.5381 -1.5166 1.2489 24 9 -0.3281 -3.7918 1.2497 25 1 -0.4850 0.8401 -0.0004 26 1 3.0969 -3.4866 0.3556 27 1 2.8613 -7.8824 -1.5398 28 1 1.2955 -7.0121 -1.6591 29 1 1.7602 -8.9975 0.2224 30 1 0.6456 -7.6293 0.5158 31 1 2.6862 -7.8069 2.2112 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928804317.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:56:32 Heat of formation + Delta-G solvation = -208.977420 kcal Electronic energy + Delta-G solvation = -23468.548618 eV Core-core repulsion = 19335.608016 eV Total energy + Delta-G solvation = -4132.940601 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.082 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.35084 -46.00385 -45.61635 -40.72265 -38.41235 -36.30453 -34.66501 -32.61688 -31.48061 -28.85203 -27.33410 -24.57821 -22.81738 -21.56321 -20.87529 -19.63415 -17.86749 -17.44660 -16.83538 -16.79419 -16.62851 -15.84989 -15.37688 -15.12719 -14.77122 -14.15130 -14.05273 -13.61473 -13.22572 -13.03559 -12.90994 -12.66910 -12.52009 -12.40040 -12.27553 -11.97787 -11.82234 -11.58620 -11.33851 -11.13481 -10.86184 -10.80415 -10.40916 -9.93094 -9.68674 -9.38740 -9.12361 -8.72469 -8.31624 -6.23794 -4.47583 2.44657 3.00738 3.21611 3.26180 3.28122 3.37524 3.73714 4.21413 4.33637 4.39842 4.55922 4.81786 4.92949 5.05434 5.23607 5.45040 5.52202 5.79923 5.84142 5.86936 6.01657 6.20488 6.70124 6.88310 6.92591 7.11297 7.45495 7.62681 8.18090 8.25919 8.48530 8.76067 9.20000 10.67894 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.026605 B = 0.006338 C = 0.006016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.167191 B = 4416.774629 C = 4653.044491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.065 3.935 3 Si 0.916 3.084 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.553 4.553 8 H 0.078 0.922 9 C 0.244 3.756 10 H 0.087 0.913 11 N -0.702 5.702 12 C 0.523 3.477 13 O -0.528 6.528 14 C -0.152 4.152 15 H 0.131 0.869 16 C -0.119 4.119 17 C 0.100 3.900 18 N -0.729 5.729 19 C 0.530 3.470 20 O -0.520 6.520 21 C 0.417 3.583 22 F -0.207 7.207 23 F -0.136 7.136 24 F -0.219 7.219 25 H 0.269 0.731 26 H 0.406 0.594 27 H 0.087 0.913 28 H 0.111 0.889 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.683 -12.711 -1.177 13.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.144 4.144 3 Si 0.742 3.258 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.589 4.589 8 H 0.096 0.904 9 C 0.139 3.861 10 H 0.104 0.896 11 N -0.351 5.351 12 C 0.306 3.694 13 O -0.405 6.405 14 C -0.176 4.176 15 H 0.149 0.851 16 C -0.157 4.157 17 C -0.025 4.025 18 N -0.385 5.385 19 C 0.315 3.685 20 O -0.395 6.395 21 C 0.360 3.640 22 F -0.189 7.189 23 F -0.117 7.117 24 F -0.201 7.201 25 H 0.080 0.920 26 H 0.241 0.759 27 H 0.105 0.895 28 H 0.129 0.871 29 H 0.099 0.901 30 H 0.096 0.904 31 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 3.064 -12.278 -1.236 12.715 hybrid contribution 0.670 0.650 0.900 1.297 sum 3.734 -11.628 -0.336 12.218 Atomic orbital electron populations 1.70385 1.05872 1.27518 1.43624 1.25083 0.95166 1.00148 0.93960 0.86250 0.79333 0.81158 0.79014 1.19724 1.20857 1.19748 1.20864 0.93884 0.88044 1.56156 0.90360 1.19779 0.88679 0.85838 0.91810 0.89559 1.46107 1.17736 1.10288 1.60943 1.19668 0.87647 0.83432 0.78681 1.90693 1.20513 1.82744 1.46564 1.22204 1.01514 0.96904 0.97013 0.85098 1.22613 1.02386 0.93374 0.97302 1.22140 0.94458 0.98851 0.87027 1.46127 1.44143 1.29994 1.18223 1.20374 0.79896 0.80099 0.88144 1.90788 1.34328 1.53522 1.60897 1.23137 0.80827 0.72762 0.87243 1.93008 1.74377 1.96154 1.55366 1.93407 1.68379 1.53723 1.96213 1.93055 1.81554 1.48530 1.96999 0.92043 0.75943 0.89485 0.87086 0.90092 0.90352 0.75015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.19 9.50 55.43 0.53 -22.67 16 2 C 0.07 1.72 5.20 -17.82 -0.09 1.63 16 3 Si 0.92 20.39 29.54 -169.99 -5.02 15.37 16 4 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.55 -14.41 8.47 -34.43 -0.29 -14.71 16 8 H 0.08 1.95 7.74 -52.49 -0.41 1.54 16 9 C 0.24 6.17 2.21 -69.08 -0.15 6.02 16 10 H 0.09 2.37 7.58 -51.93 -0.39 1.98 16 11 N -0.70 -14.97 4.92 -54.93 -0.27 -15.24 16 12 C 0.52 10.04 6.72 -10.99 -0.07 9.97 16 13 O -0.53 -11.47 14.04 5.55 0.08 -11.39 16 14 C -0.15 -2.14 3.33 -91.70 -0.31 -2.44 16 15 H 0.13 1.55 8.14 -51.93 -0.42 1.13 16 16 C -0.12 -1.25 6.54 -25.01 -0.16 -1.41 16 17 C 0.10 0.98 7.78 -3.12 -0.02 0.96 16 18 N -0.73 -8.65 6.24 -59.20 -0.37 -9.02 16 19 C 0.53 8.14 7.64 -10.86 -0.08 8.06 16 20 O -0.52 -9.76 17.85 5.55 0.10 -9.66 16 21 C 0.42 10.94 2.81 37.16 0.10 11.04 16 22 F -0.21 -5.41 16.94 2.25 0.04 -5.37 16 23 F -0.14 -3.82 12.91 2.25 0.03 -3.79 16 24 F -0.22 -5.61 15.68 2.25 0.04 -5.57 16 25 H 0.27 7.03 8.31 -40.82 -0.34 6.70 16 26 H 0.41 8.19 8.32 -40.82 -0.34 7.85 16 27 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.11 1.30 6.93 -51.93 -0.36 0.94 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.41 4.08 8.96 -40.82 -0.37 3.72 16 LS Contribution 280.04 15.07 4.22 4.22 Total: -1.00 -31.97 280.04 -4.41 -36.37 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -2.69 Total: 7.64 kcal Atomic # 6 Polarization: 20.19 SS G_CDS: -1.08 Total: 19.10 kcal Atomic # 7 Polarization: -46.81 SS G_CDS: -0.11 Total: -46.93 kcal Atomic # 8 Polarization: -21.23 SS G_CDS: 0.18 Total: -21.05 kcal Atomic # 9 Polarization: -14.83 SS G_CDS: 0.10 Total: -14.73 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -31.97 -4.41 -36.37 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928804317.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -172.605 kcal (2) G-P(sol) polarization free energy of solvation -31.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds