Wall clock time and date at job start Tue Mar 31 2020 01:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 120.00357 * 2 1 4 4 H 1.48497 * 109.46950 * 239.99754 * 3 2 1 5 5 H 1.48501 * 109.46663 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47289 * 119.99113 * 3 2 1 7 7 C 1.37885 * 120.00302 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00094 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99531 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.46850 * 59.99721 * 9 7 2 11 11 N 1.46495 * 109.46817 * 179.97438 * 9 7 2 12 12 C 1.34775 * 119.99913 * 204.99852 * 11 9 7 13 13 O 1.21286 * 120.00066 * 0.02562 * 12 11 9 14 14 C 1.50701 * 120.00059 * 179.97438 * 12 11 9 15 15 H 1.09001 * 110.54000 * 298.84229 * 14 12 11 16 16 C 1.54784 * 110.61673 * 176.21507 * 14 12 11 17 17 C 1.54480 * 101.69261 * 266.40316 * 16 14 12 18 18 N 1.46764 * 105.47241 * 334.38904 * 17 16 14 19 19 C 1.34420 * 111.30051 * 17.01779 * 18 17 16 20 20 O 1.21283 * 124.93917 * 179.55324 * 19 18 17 21 21 C 1.52998 * 109.47132 * 299.99638 * 9 7 2 22 22 F 1.39901 * 109.47250 * 300.00452 * 21 9 7 23 23 F 1.39901 * 109.47012 * 60.00163 * 21 9 7 24 24 F 1.39904 * 109.47003 * 180.02562 * 21 9 7 25 25 H 0.97001 * 119.99929 * 0.02562 * 1 2 3 26 26 H 0.97003 * 120.00122 * 25.00231 * 11 9 7 27 27 H 1.08997 * 111.17051 * 148.23263 * 16 14 12 28 28 H 1.09002 * 110.83479 * 24.41979 * 16 14 12 29 29 H 1.09003 * 110.24569 * 215.39240 * 17 16 14 30 30 H 1.09001 * 110.24711 * 93.39200 * 17 16 14 31 31 H 0.96999 * 124.34802 * 197.03621 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6247 -2.5571 -0.8897 11 7 2.2030 -3.6127 0.0005 12 6 1.8369 -4.8123 -0.4927 13 8 0.7194 -4.9699 -0.9370 14 6 2.8164 -5.9576 -0.4933 15 1 3.6910 -5.7125 -1.0958 16 6 2.1440 -7.2495 -1.0174 17 6 1.6748 -7.9133 0.2963 18 7 2.5755 -7.4027 1.3364 19 6 3.2277 -6.3032 0.9209 20 8 4.0258 -5.6763 1.5851 21 6 0.3710 -2.5800 1.2495 22 9 1.1749 -2.5056 2.3920 23 9 -0.5381 -1.5166 1.2489 24 9 -0.3281 -3.7918 1.2497 25 1 -0.4850 0.8401 -0.0004 26 1 3.0969 -3.4866 0.3556 27 1 2.8613 -7.8824 -1.5398 28 1 1.2955 -7.0121 -1.6591 29 1 1.7602 -8.9975 0.2224 30 1 0.6456 -7.6293 0.5158 31 1 2.6862 -7.8069 2.2112 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928804317.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:56:31 Heat of formation + Delta-G solvation = -234.024151 kcal Electronic energy + Delta-G solvation = -23469.634725 eV Core-core repulsion = 19335.608016 eV Total energy + Delta-G solvation = -4134.026709 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.082 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.47695 -48.11683 -47.78055 -41.94591 -39.90605 -37.49324 -36.45765 -34.51346 -32.63414 -30.48998 -28.57002 -26.63436 -24.31024 -22.77614 -22.40651 -21.14304 -19.48631 -18.93574 -18.73630 -18.56644 -18.49024 -17.67086 -16.91340 -16.57069 -16.41257 -15.59444 -15.34644 -15.03883 -14.88812 -14.70510 -14.56200 -14.52385 -14.36135 -14.30452 -14.07604 -13.89921 -13.65251 -13.09738 -12.81041 -12.65157 -12.40642 -12.26784 -12.22418 -11.63781 -11.21219 -10.90113 -10.70816 -10.13822 -10.12513 -8.24663 -6.55613 1.16049 1.44790 1.47389 1.55533 1.59339 2.15773 2.36758 2.37546 2.50967 2.90192 3.27138 3.43714 3.61362 3.75221 3.83475 4.03383 4.17585 4.25687 4.52948 4.75600 4.85410 5.04417 5.16307 5.33627 5.48614 5.60952 5.72660 5.92061 6.48239 6.58035 7.08512 7.13107 7.21832 8.67949 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.026605 B = 0.006338 C = 0.006016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.167191 B = 4416.774629 C = 4653.044491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.017 3.983 3 Si 0.982 3.018 4 H -0.260 1.260 5 H -0.281 1.281 6 H -0.270 1.270 7 C -0.567 4.567 8 H 0.087 0.913 9 C 0.251 3.749 10 H 0.057 0.943 11 N -0.705 5.705 12 C 0.518 3.482 13 O -0.556 6.556 14 C -0.146 4.146 15 H 0.157 0.843 16 C -0.111 4.111 17 C 0.096 3.904 18 N -0.716 5.716 19 C 0.522 3.478 20 O -0.562 6.562 21 C 0.413 3.587 22 F -0.207 7.207 23 F -0.148 7.148 24 F -0.218 7.218 25 H 0.270 0.730 26 H 0.411 0.589 27 H 0.129 0.871 28 H 0.099 0.901 29 H 0.127 0.873 30 H 0.062 0.938 31 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.970 -13.911 -1.612 14.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.188 4.188 3 Si 0.806 3.194 4 H -0.184 1.184 5 H -0.206 1.206 6 H -0.195 1.195 7 C -0.603 4.603 8 H 0.105 0.895 9 C 0.144 3.856 10 H 0.075 0.925 11 N -0.355 5.355 12 C 0.303 3.697 13 O -0.435 6.435 14 C -0.171 4.171 15 H 0.174 0.826 16 C -0.149 4.149 17 C -0.027 4.027 18 N -0.371 5.371 19 C 0.307 3.693 20 O -0.441 6.441 21 C 0.357 3.643 22 F -0.189 7.189 23 F -0.130 7.130 24 F -0.200 7.200 25 H 0.080 0.920 26 H 0.247 0.753 27 H 0.147 0.853 28 H 0.118 0.882 29 H 0.145 0.855 30 H 0.080 0.920 31 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 4.346 -13.543 -1.674 14.322 hybrid contribution 0.200 0.930 1.040 1.410 sum 4.546 -12.613 -0.634 13.422 Atomic orbital electron populations 1.70501 1.07369 1.28350 1.44406 1.25978 0.95943 1.03606 0.93299 0.85225 0.78083 0.76786 0.79352 1.18437 1.20569 1.19485 1.21193 0.94436 0.88584 1.56112 0.89474 1.19394 0.88857 0.87368 0.89970 0.92528 1.46068 1.17291 1.10351 1.61751 1.20535 0.88213 0.83771 0.77144 1.90676 1.22141 1.83256 1.47404 1.22262 1.01256 0.96196 0.97366 0.82603 1.22734 1.02689 0.91874 0.97597 1.22367 0.93002 1.01446 0.85894 1.46171 1.43008 1.28803 1.19091 1.20590 0.79807 0.80593 0.88357 1.90765 1.36414 1.55028 1.61886 1.23354 0.80807 0.72471 0.87712 1.92996 1.74330 1.96159 1.55415 1.93380 1.68882 1.54401 1.96303 1.93048 1.81580 1.48332 1.97018 0.91996 0.75309 0.85260 0.88247 0.85462 0.91963 0.73875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -48.78 9.50 21.45 0.20 -48.57 16 2 C 0.02 0.91 5.20 84.66 0.44 1.35 16 3 Si 0.98 41.43 29.54 68.60 2.03 43.46 16 4 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 5 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 6 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 7 C -0.57 -29.70 8.47 25.60 0.22 -29.48 16 8 H 0.09 4.30 7.74 -2.91 -0.02 4.28 16 9 C 0.25 12.93 2.21 44.25 0.10 13.02 16 10 H 0.06 3.24 7.58 -2.39 -0.02 3.22 16 11 N -0.70 -30.25 4.92 -446.09 -2.19 -32.44 16 12 C 0.52 19.74 6.72 87.66 0.59 20.33 16 13 O -0.56 -24.32 14.04 -3.05 -0.04 -24.36 16 14 C -0.15 -3.85 3.33 -11.49 -0.04 -3.89 16 15 H 0.16 3.30 8.14 -2.39 -0.02 3.28 16 16 C -0.11 -1.99 6.54 31.71 0.21 -1.78 16 17 C 0.10 1.59 7.78 86.83 0.68 2.27 16 18 N -0.72 -15.29 6.24 -459.80 -2.87 -18.16 16 19 C 0.52 15.19 7.64 87.90 0.67 15.87 16 20 O -0.56 -20.73 17.85 -3.04 -0.05 -20.78 16 21 C 0.41 22.07 2.81 71.98 0.20 22.27 16 22 F -0.21 -10.91 16.94 44.97 0.76 -10.15 16 23 F -0.15 -8.51 12.91 44.97 0.58 -7.93 16 24 F -0.22 -11.32 15.68 44.97 0.71 -10.61 16 25 H 0.27 14.29 8.31 -92.71 -0.77 13.52 16 26 H 0.41 16.63 8.32 -92.71 -0.77 15.86 16 27 H 0.13 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.10 2.11 6.93 -2.39 -0.02 2.09 16 29 H 0.13 1.01 8.14 -2.39 -0.02 1.00 16 30 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.42 7.40 8.96 -92.71 -0.83 6.57 16 Total: -1.00 -70.17 280.04 1.79 -68.38 By element: Atomic # 1 Polarization: 21.62 SS G_CDS: -0.39 Total: 21.23 kcal Atomic # 6 Polarization: 36.89 SS G_CDS: 3.06 Total: 39.95 kcal Atomic # 7 Polarization: -94.32 SS G_CDS: -4.86 Total: -99.18 kcal Atomic # 8 Polarization: -45.05 SS G_CDS: -0.10 Total: -45.15 kcal Atomic # 9 Polarization: -30.74 SS G_CDS: 2.05 Total: -28.69 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 2.03 Total: 43.46 kcal Total: -70.17 1.79 -68.38 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928804317.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -165.644 kcal (2) G-P(sol) polarization free energy of solvation -70.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -235.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -234.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds