Wall clock time and date at job start Tue Mar 31 2020 01:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 119.99665 * 2 1 4 4 H 1.48507 * 109.46570 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47340 * 299.99712 * 3 2 1 6 6 H 1.48501 * 109.47097 * 60.00365 * 3 2 1 7 7 C 1.37877 * 119.99933 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99460 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00134 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.47524 * 300.00958 * 9 7 2 11 11 N 1.46495 * 109.47013 * 180.02562 * 9 7 2 12 12 C 1.34775 * 119.99913 * 155.00215 * 11 9 7 13 13 O 1.21286 * 120.00066 * 0.02562 * 12 11 9 14 14 C 1.50701 * 120.00059 * 179.97438 * 12 11 9 15 15 H 1.09001 * 110.54000 * 298.84229 * 14 12 11 16 16 C 1.54784 * 110.61673 * 176.21507 * 14 12 11 17 17 C 1.54480 * 101.69261 * 266.40316 * 16 14 12 18 18 N 1.46764 * 105.47241 * 334.38904 * 17 16 14 19 19 C 1.34420 * 111.30051 * 17.01779 * 18 17 16 20 20 O 1.21283 * 124.93917 * 179.55324 * 19 18 17 21 21 C 1.53001 * 109.46849 * 60.00579 * 9 7 2 22 22 F 1.39897 * 109.47304 * 179.97438 * 21 9 7 23 23 F 1.39901 * 109.47149 * 299.99853 * 21 9 7 24 24 F 1.39900 * 109.47293 * 59.99942 * 21 9 7 25 25 H 0.97001 * 120.00158 * 0.02562 * 1 2 3 26 26 H 0.97003 * 120.00122 * 335.00594 * 11 9 7 27 27 H 1.08997 * 111.17051 * 148.23263 * 16 14 12 28 28 H 1.09008 * 110.86851 * 24.43704 * 16 14 12 29 29 H 1.09003 * 110.24569 * 215.39240 * 17 16 14 30 30 H 1.09001 * 110.24711 * 93.39200 * 17 16 14 31 31 H 0.96999 * 124.34802 * 197.03621 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.6246 -2.5571 0.8895 11 7 2.2030 -3.6126 -0.0005 12 6 1.8369 -4.8122 0.4927 13 8 0.7191 -4.9701 0.9361 14 6 2.8160 -5.9578 0.4922 15 1 3.1161 -6.2040 -0.5264 16 6 2.2052 -7.1972 1.1898 17 6 2.7147 -7.0242 2.6379 18 7 3.9451 -6.2317 2.5280 19 6 4.0268 -5.6199 1.3338 20 8 4.9363 -4.8978 0.9841 21 6 0.3711 -2.5799 -1.2496 22 9 -0.3280 -3.7917 -1.2499 23 9 -0.5381 -1.5166 -1.2491 24 9 1.1750 -2.5056 -2.3921 25 1 -0.4850 0.8400 -0.0004 26 1 3.0969 -3.4865 -0.3555 27 1 2.5819 -8.1212 0.7515 28 1 1.1162 -7.1660 1.1532 29 1 2.9307 -7.9966 3.0804 30 1 1.9756 -6.4922 3.2368 31 1 4.6135 -6.1589 3.2271 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928804318.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:56:33 Heat of formation + Delta-G solvation = -233.771767 kcal Electronic energy + Delta-G solvation = -23280.588376 eV Core-core repulsion = 19146.572611 eV Total energy + Delta-G solvation = -4134.015765 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.082 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.44587 -48.07641 -47.75286 -41.94331 -39.90222 -37.48417 -36.46152 -34.52284 -32.62947 -30.49089 -28.56419 -26.63064 -24.30667 -22.77862 -22.38023 -21.14494 -19.49679 -18.90776 -18.75076 -18.51700 -18.42987 -17.70183 -16.95600 -16.57486 -16.33751 -15.68245 -15.26052 -14.99438 -14.86897 -14.69901 -14.51010 -14.47434 -14.41279 -14.31188 -14.05436 -13.90224 -13.62145 -13.11593 -12.80314 -12.70028 -12.39850 -12.27334 -12.22645 -11.60499 -11.20849 -10.89761 -10.73539 -10.14478 -10.10340 -8.26129 -6.56518 1.18554 1.41682 1.43763 1.55532 1.57391 2.15660 2.33954 2.43564 2.49564 2.88950 3.27101 3.43271 3.62469 3.77426 3.82846 4.03557 4.18229 4.27027 4.52871 4.77216 4.84446 5.04559 5.16227 5.33300 5.48237 5.60381 5.73972 5.93725 6.47759 6.57519 7.08480 7.14266 7.21287 8.66686 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.021511 B = 0.006715 C = 0.005708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.331685 B = 4168.571619 C = 4903.957637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.018 3.982 3 Si 0.980 3.020 4 H -0.262 1.262 5 H -0.276 1.276 6 H -0.273 1.273 7 C -0.565 4.565 8 H 0.082 0.918 9 C 0.251 3.749 10 H 0.052 0.948 11 N -0.705 5.705 12 C 0.518 3.482 13 O -0.556 6.556 14 C -0.148 4.148 15 H 0.151 0.849 16 C -0.113 4.113 17 C 0.098 3.902 18 N -0.714 5.714 19 C 0.525 3.475 20 O -0.561 6.561 21 C 0.416 3.584 22 F -0.215 7.215 23 F -0.149 7.149 24 F -0.203 7.203 25 H 0.270 0.730 26 H 0.411 0.589 27 H 0.127 0.873 28 H 0.098 0.902 29 H 0.127 0.873 30 H 0.066 0.934 31 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.523 -13.394 3.376 14.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.187 4.187 3 Si 0.804 3.196 4 H -0.186 1.186 5 H -0.202 1.202 6 H -0.199 1.199 7 C -0.602 4.602 8 H 0.100 0.900 9 C 0.144 3.856 10 H 0.070 0.930 11 N -0.355 5.355 12 C 0.304 3.696 13 O -0.435 6.435 14 C -0.172 4.172 15 H 0.168 0.832 16 C -0.150 4.150 17 C -0.025 4.025 18 N -0.369 5.369 19 C 0.309 3.691 20 O -0.440 6.440 21 C 0.360 3.640 22 F -0.197 7.197 23 F -0.130 7.130 24 F -0.185 7.185 25 H 0.080 0.920 26 H 0.247 0.753 27 H 0.145 0.855 28 H 0.116 0.884 29 H 0.145 0.855 30 H 0.084 0.916 31 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 4.903 -13.031 3.429 14.339 hybrid contribution 0.480 1.157 -0.275 1.283 sum 5.383 -11.873 3.154 13.413 Atomic orbital electron populations 1.70511 1.07232 1.28209 1.44513 1.25939 0.95952 1.03474 0.93355 0.85155 0.78875 0.77598 0.78002 1.18634 1.20164 1.19869 1.21208 0.94221 0.88733 1.56000 0.89993 1.19358 0.88829 0.87280 0.90167 0.93001 1.46066 1.17130 1.10261 1.62015 1.20524 0.88267 0.83773 0.77077 1.90676 1.22434 1.83031 1.47327 1.22255 0.94158 0.96027 1.04753 0.83165 1.22731 1.03210 0.95330 0.93771 1.22354 0.84915 0.97456 0.97808 1.46147 1.24829 1.49720 1.16240 1.20498 0.86058 0.78789 0.83718 1.90767 1.38824 1.38524 1.75891 1.23162 0.80752 0.72564 0.87521 1.93057 1.81508 1.48123 1.97002 1.93380 1.68856 1.54471 1.96295 1.92992 1.74225 1.96158 1.55140 0.91972 0.75314 0.85504 0.88378 0.85537 0.91558 0.73740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -48.67 9.50 21.45 0.20 -48.47 16 2 C 0.02 0.98 5.20 84.65 0.44 1.42 16 3 Si 0.98 42.03 29.54 68.60 2.03 44.05 16 4 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 5 H -0.28 -11.64 7.11 99.48 0.71 -10.94 16 6 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 7 C -0.56 -30.01 8.46 25.60 0.22 -29.80 16 8 H 0.08 4.22 7.74 -2.91 -0.02 4.20 16 9 C 0.25 12.91 2.21 44.25 0.10 13.01 16 10 H 0.05 3.01 7.58 -2.39 -0.02 2.99 16 11 N -0.70 -30.33 4.92 -446.11 -2.19 -32.53 16 12 C 0.52 19.80 6.72 87.66 0.59 20.39 16 13 O -0.56 -24.35 14.04 -3.05 -0.04 -24.39 16 14 C -0.15 -3.91 3.33 -11.49 -0.04 -3.95 16 15 H 0.15 3.35 8.14 -2.39 -0.02 3.33 16 16 C -0.11 -2.02 6.54 31.71 0.21 -1.82 16 17 C 0.10 1.52 7.78 86.83 0.68 2.20 16 18 N -0.71 -14.38 6.24 -459.80 -2.87 -17.25 16 19 C 0.52 14.87 7.64 87.90 0.67 15.54 16 20 O -0.56 -20.26 17.85 -3.04 -0.05 -20.32 16 21 C 0.42 21.73 2.81 71.98 0.20 21.93 16 22 F -0.21 -10.84 15.68 44.97 0.70 -10.14 16 23 F -0.15 -8.41 12.91 44.97 0.58 -7.83 16 24 F -0.20 -10.16 16.94 44.97 0.76 -9.40 16 25 H 0.27 14.21 8.31 -92.71 -0.77 13.44 16 26 H 0.41 16.70 8.32 -92.71 -0.77 15.93 16 27 H 0.13 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.10 2.12 6.93 -2.38 -0.02 2.10 16 29 H 0.13 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.42 6.82 8.96 -92.71 -0.83 5.98 16 Total: -1.00 -69.54 280.04 1.79 -67.75 By element: Atomic # 1 Polarization: 19.98 SS G_CDS: -0.39 Total: 19.60 kcal Atomic # 6 Polarization: 35.85 SS G_CDS: 3.06 Total: 38.92 kcal Atomic # 7 Polarization: -93.38 SS G_CDS: -4.86 Total: -98.24 kcal Atomic # 8 Polarization: -44.61 SS G_CDS: -0.10 Total: -44.71 kcal Atomic # 9 Polarization: -29.42 SS G_CDS: 2.05 Total: -27.37 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.05 kcal Total: -69.54 1.79 -67.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928804318.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -166.023 kcal (2) G-P(sol) polarization free energy of solvation -69.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -235.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -233.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds