Wall clock time and date at job start Tue Mar 31 2020 01:56:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00540 * 2 1 4 4 H 1.48501 * 109.47124 * 265.16247 * 3 2 1 5 5 H 1.48504 * 109.46636 * 25.16145 * 3 2 1 6 6 H 1.48499 * 109.47289 * 145.16153 * 3 2 1 7 7 C 1.37886 * 119.99720 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99446 * 354.06001 * 7 2 1 9 9 C 1.50699 * 120.00127 * 174.06875 * 7 2 1 10 10 H 1.09000 * 109.47274 * 56.78968 * 9 7 2 11 11 N 1.46505 * 109.46553 * 296.79517 * 9 7 2 12 12 C 1.34776 * 119.99798 * 155.00256 * 11 9 7 13 13 O 1.21288 * 119.99847 * 0.02562 * 12 11 9 14 14 C 1.50700 * 120.00293 * 179.97438 * 12 11 9 15 15 H 1.09003 * 110.43260 * 59.29881 * 14 12 11 16 16 C 1.54619 * 110.48807 * 181.84025 * 14 12 11 17 17 C 1.54478 * 101.76776 * 93.88057 * 16 14 12 18 18 N 1.46768 * 105.47234 * 25.41476 * 17 16 14 19 19 C 1.34741 * 111.34906 * 343.02298 * 18 17 16 20 20 O 1.21282 * 125.12088 * 180.39205 * 19 18 17 21 21 C 1.52994 * 109.47113 * 176.79776 * 9 7 2 22 22 F 1.39903 * 109.47205 * 185.24715 * 21 9 7 23 23 F 1.39899 * 109.47493 * 65.24630 * 21 9 7 24 24 F 1.39907 * 109.46965 * 305.24685 * 21 9 7 25 25 H 0.97002 * 119.99646 * 359.97438 * 1 2 3 26 26 H 0.96992 * 120.00041 * 334.99731 * 11 9 7 27 27 H 1.08999 * 110.97411 * 212.00218 * 16 14 12 28 28 H 1.08999 * 110.97151 * 335.76498 * 16 14 12 29 29 H 1.09000 * 110.24745 * 144.40942 * 17 16 14 30 30 H 1.08997 * 110.25012 * 266.42063 * 17 16 14 31 31 H 0.96995 * 124.35174 * 162.98264 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.5991 1.9873 -1.3951 5 1 1.3993 2.6800 0.5953 6 1 3.4919 1.4717 0.7998 7 6 2.0045 -1.1942 -0.0005 8 1 1.4687 -2.1269 0.0958 9 6 3.5054 -1.1977 -0.1354 10 1 3.9430 -0.5924 0.6585 11 7 3.8799 -0.6401 -1.4374 12 6 5.0930 -0.0775 -1.6058 13 8 5.8748 -0.0333 -0.6795 14 6 5.4786 0.4955 -2.9452 15 1 4.7829 1.2823 -3.2370 16 6 6.9252 1.0400 -2.9047 17 6 7.7323 -0.1711 -3.4225 18 7 6.7945 -0.9434 -4.2460 19 6 5.5179 -0.5928 -3.9952 20 8 4.5433 -1.0773 -4.5303 21 6 4.0238 -2.6331 -0.0271 22 9 5.4228 -2.6253 -0.0322 23 9 3.5577 -3.3805 -1.1140 24 9 3.5650 -3.2060 1.1639 25 1 -0.4850 0.8401 0.0004 26 1 3.2549 -0.6759 -2.1782 27 1 7.0383 1.8969 -3.5688 28 1 7.2171 1.2966 -1.8863 29 1 8.5743 0.1671 -4.0264 30 1 8.0851 -0.7747 -2.5863 31 1 7.0594 -1.6194 -4.8892 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928804319.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:56:36 Heat of formation + Delta-G solvation = -228.887180 kcal Electronic energy + Delta-G solvation = -23549.203919 eV Core-core repulsion = 19415.399966 eV Total energy + Delta-G solvation = -4133.803953 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 280.082 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.10671 -46.62923 -46.57865 -40.75711 -38.53422 -36.35172 -34.88816 -32.53849 -31.56050 -29.38198 -27.51570 -25.02819 -22.79851 -21.57287 -20.94082 -19.66266 -18.28948 -17.64551 -17.41633 -17.28472 -16.79732 -16.44985 -15.47972 -15.27423 -14.92785 -14.18395 -13.97655 -13.67120 -13.51287 -13.47037 -13.25348 -13.05928 -12.94815 -12.78811 -12.72303 -12.70729 -12.68196 -11.85537 -11.52729 -11.36675 -11.17688 -10.69481 -10.24901 -10.01481 -9.86576 -9.52928 -9.16112 -8.98024 -8.53551 -6.51167 -4.64195 2.40411 2.88294 3.06600 3.18776 3.24298 3.33204 3.57982 3.88331 4.09115 4.31307 4.37097 4.73692 4.89339 4.95665 5.04320 5.11786 5.20489 5.37689 5.46574 5.52838 5.78315 5.97173 6.36105 6.68650 6.86382 6.89345 7.00202 7.83817 8.14915 8.19675 8.50592 8.65317 9.02252 10.57508 Molecular weight = 280.08amu Principal moments of inertia in cm(-1) A = 0.017017 B = 0.008941 C = 0.007307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.064229 B = 3131.018756 C = 3831.039088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.096 3.904 3 Si 0.875 3.125 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.257 1.257 7 C -0.538 4.538 8 H 0.096 0.904 9 C 0.202 3.798 10 H 0.093 0.907 11 N -0.706 5.706 12 C 0.516 3.484 13 O -0.532 6.532 14 C -0.158 4.158 15 H 0.130 0.870 16 C -0.119 4.119 17 C 0.102 3.898 18 N -0.731 5.731 19 C 0.532 3.468 20 O -0.514 6.514 21 C 0.442 3.558 22 F -0.195 7.195 23 F -0.187 7.187 24 F -0.183 7.183 25 H 0.275 0.725 26 H 0.409 0.591 27 H 0.086 0.914 28 H 0.110 0.890 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.332 2.563 -6.309 14.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.113 4.113 3 Si 0.702 3.298 4 H -0.195 1.195 5 H -0.210 1.210 6 H -0.181 1.181 7 C -0.576 4.576 8 H 0.114 0.886 9 C 0.099 3.901 10 H 0.111 0.889 11 N -0.359 5.359 12 C 0.300 3.700 13 O -0.409 6.409 14 C -0.183 4.183 15 H 0.148 0.852 16 C -0.157 4.157 17 C -0.022 4.022 18 N -0.387 5.387 19 C 0.316 3.684 20 O -0.389 6.389 21 C 0.387 3.613 22 F -0.176 7.176 23 F -0.169 7.169 24 F -0.165 7.165 25 H 0.085 0.915 26 H 0.246 0.754 27 H 0.105 0.895 28 H 0.128 0.872 29 H 0.099 0.901 30 H 0.096 0.904 31 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 13.135 2.487 -5.824 14.582 hybrid contribution 0.257 0.333 -0.691 0.809 sum 13.393 2.819 -6.515 15.158 Atomic orbital electron populations 1.69870 1.06366 1.28297 1.44807 1.24913 0.94797 0.99228 0.92367 0.86825 0.80680 0.82801 0.79544 1.19493 1.20984 1.18142 1.20801 0.86430 0.96675 1.53683 0.88607 1.20305 0.98928 0.85304 0.85594 0.88946 1.47600 1.15414 1.57321 1.15573 1.19992 0.82814 0.78702 0.88500 1.90666 1.50575 1.57806 1.41883 1.22257 1.01383 0.99581 0.95037 0.85190 1.22583 0.91217 0.97128 1.04782 1.22108 0.92286 0.92908 0.94938 1.46193 1.07188 1.42125 1.43230 1.20384 0.83204 0.82757 0.82029 1.90804 1.37175 1.57377 1.53531 1.21438 0.74482 0.92202 0.73203 1.93134 1.31108 1.97155 1.96251 1.93107 1.88543 1.79570 1.55651 1.93111 1.88821 1.86792 1.47741 0.91487 0.75369 0.89503 0.87167 0.90102 0.90417 0.75016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.94 13.96 55.43 0.77 -23.16 16 2 C 0.10 2.54 5.46 -17.82 -0.10 2.44 16 3 Si 0.88 20.02 26.13 -169.99 -4.44 15.57 16 4 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.26 -5.94 6.55 56.52 0.37 -5.57 16 7 C -0.54 -14.10 8.64 -34.44 -0.30 -14.39 16 8 H 0.10 2.74 7.91 -52.49 -0.42 2.32 16 9 C 0.20 4.72 1.41 -69.08 -0.10 4.63 16 10 H 0.09 2.24 6.29 -51.93 -0.33 1.91 16 11 N -0.71 -15.10 3.15 -54.93 -0.17 -15.28 16 12 C 0.52 9.97 6.57 -10.99 -0.07 9.90 16 13 O -0.53 -11.10 14.03 5.55 0.08 -11.03 16 14 C -0.16 -2.37 3.32 -91.79 -0.30 -2.67 16 15 H 0.13 1.79 8.14 -51.93 -0.42 1.37 16 16 C -0.12 -1.30 6.51 -25.10 -0.16 -1.47 16 17 C 0.10 0.99 7.78 -3.12 -0.02 0.97 16 18 N -0.73 -8.61 6.25 -59.12 -0.37 -8.97 16 19 C 0.53 8.34 7.73 -10.72 -0.08 8.26 16 20 O -0.51 -9.90 17.99 5.56 0.10 -9.80 16 21 C 0.44 10.02 2.79 37.15 0.10 10.13 16 22 F -0.19 -4.28 15.84 2.25 0.04 -4.24 16 23 F -0.19 -4.28 16.97 2.25 0.04 -4.24 16 24 F -0.18 -4.14 16.83 2.25 0.04 -4.11 16 25 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 26 H 0.41 8.73 8.56 -40.82 -0.35 8.38 16 27 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.11 1.31 6.94 -51.93 -0.36 0.95 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.41 3.99 8.96 -40.82 -0.37 3.62 16 LS Contribution 281.67 15.07 4.24 4.24 Total: -1.00 -30.77 281.67 -3.39 -34.16 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -2.67 Total: 9.07 kcal Atomic # 6 Polarization: 18.82 SS G_CDS: -1.04 Total: 17.79 kcal Atomic # 7 Polarization: -47.65 SS G_CDS: 0.23 Total: -47.42 kcal Atomic # 8 Polarization: -21.00 SS G_CDS: 0.18 Total: -20.82 kcal Atomic # 9 Polarization: -12.70 SS G_CDS: 0.11 Total: -12.59 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -4.44 Total: 15.57 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -30.77 -3.39 -34.16 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928804319.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -194.731 kcal (2) G-P(sol) polarization free energy of solvation -30.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -225.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -228.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds